RNA–Protein interactions for RNA: ENST00000537556.1

SRGAP1-202, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 2,976 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-202ENST00000537556 BRPF3Q9ULD4 1205 aa11.62□□□□□ -0.55
SRGAP1-202ENST00000537556 EEA1Q15075 1411 aa11.62□□□□□ -0.55
SRGAP1-202ENST00000537556 PPM1GO15355 546 aaPredicted RBP11.62□□□□□ -0.55
SRGAP1-202ENST00000537556 FAM43AQ8N2R8 423 aa11.61□□□□□ -0.55
SRGAP1-202ENST00000537556 GSE1Q14687 1217 aa11.58□□□□□ -0.55
SRGAP1-202ENST00000537556 PPP1R15AO75807 674 aaPredicted RBP11.58□□□□□ -0.56
SRGAP1-202ENST00000537556 B4GALNT3Q6L9W6 998 aa11.57□□□□□ -0.56
SRGAP1-202ENST00000537556 HNRNPUQ00839 825 aaKnown RBP eCLIP11.56□□□□□ -0.56
SRGAP1-202ENST00000537556 UBTFP17480 764 aaKnown RBP11.55□□□□□ -0.56
SRGAP1-202ENST00000537556 SCRIBQ14160 1630 aa11.55□□□□□ -0.56
SRGAP1-202ENST00000537556 PABPN1Q86U42 306 aaKnown RBP eCLIP11.53□□□□□ -0.56
SRGAP1-202ENST00000537556 RRP9O43818 475 aaKnown RBP11.52□□□□□ -0.57
SRGAP1-202ENST00000537556 HSP90AA2PQ14568 343 aaPredicted RBP11.52□□□□□ -0.57
SRGAP1-202ENST00000537556 DNAJC5BQ9UF47 199 aa11.51□□□□□ -0.57
SRGAP1-202ENST00000537556 LAS1LQ9Y4W2 734 aaKnown RBP11.5□□□□□ -0.57
SRGAP1-202ENST00000537556 GOLGA3Q08378 1498 aa11.47□□□□□ -0.57
SRGAP1-202ENST00000537556 FGD1P98174 961 aa11.45□□□□□ -0.58
SRGAP1-202ENST00000537556 VPS8Q8N3P4 1428 aa11.45□□□□□ -0.58
SRGAP1-202ENST00000537556 HSP90AA1P07900 732 aaKnown RBP11.45□□□□□ -0.58
SRGAP1-202ENST00000537556 RBM10P98175 930 aaKnown RBP11.43□□□□□ -0.58
SRGAP1-202ENST00000537556 PDE4CQ08493 712 aa11.43□□□□□ -0.58
SRGAP1-202ENST00000537556 FRAT1Q92837 279 aaPredicted RBP11.43□□□□□ -0.58
SRGAP1-202ENST00000537556 EIF4G1Q04637 1599 aaKnown RBP11.43□□□□□ -0.58
SRGAP1-202ENST00000537556 AAMPQ13685 434 aa11.43□□□□□ -0.58
SRGAP1-202ENST00000537556 A0A0U1RQG5 324 aaPredicted RBP11.42□□□□□ -0.58
SRGAP1-202ENST00000537556 CUX2O14529 1486 aa11.41□□□□□ -0.58
SRGAP1-202ENST00000537556 CLIP1P30622 1438 aa11.41□□□□□ -0.58
SRGAP1-202ENST00000537556 NPM2Q86SE8 214 aaKnown RBP11.4□□□□□ -0.58
SRGAP1-202ENST00000537556 DDRGK1Q96HY6 314 aa11.4□□□□□ -0.58
SRGAP1-202ENST00000537556 CC2D2AQ9P2K1 1620 aa11.4□□□□□ -0.59
SRGAP1-202ENST00000537556 CEP164Q9UPV0 1460 aa11.39□□□□□ -0.59
SRGAP1-202ENST00000537556 NFKBIBQ15653 356 aa11.39□□□□□ -0.59
SRGAP1-202ENST00000537556 ABCC8Q09428 1581 aa11.38□□□□□ -0.59
SRGAP1-202ENST00000537556 CCDC88BA6NC98 1476 aa11.38□□□□□ -0.59
SRGAP1-202ENST00000537556 WDR97A6NE52 1622 aa11.38□□□□□ -0.59
SRGAP1-202ENST00000537556 SOGA1O94964 1423 aa11.37□□□□□ -0.59
SRGAP1-202ENST00000537556 NAP1L5Q96NT1 182 aaPredicted RBP11.37□□□□□ -0.59
SRGAP1-202ENST00000537556 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
SRGAP1-202ENST00000537556 TCERG1O14776 1098 aaKnown RBP11.36□□□□□ -0.59
SRGAP1-202ENST00000537556 ZBED9Q6R2W3 1325 aa11.35□□□□□ -0.59
SRGAP1-202ENST00000537556 PNNQ9H307 717 aaKnown RBP11.34□□□□□ -0.59
SRGAP1-202ENST00000537556 PDIA4P13667 645 aaKnown RBP11.33□□□□□ -0.6
SRGAP1-202ENST00000537556 DCAF11Q8TEB1 546 aa11.33□□□□□ -0.6
SRGAP1-202ENST00000537556 MAPKBP1O60336 1514 aa11.32□□□□□ -0.6
SRGAP1-202ENST00000537556 MS4A1P11836 297 aa11.31□□□□□ -0.6
SRGAP1-202ENST00000537556 PDE4AP27815 886 aa11.31□□□□□ -0.6
SRGAP1-202ENST00000537556 RRAGDQ9NQL2 400 aaPredicted RBP11.31□□□□□ -0.6
SRGAP1-202ENST00000537556 RRBP1Q9P2E9 1410 aaKnown RBP11.31□□□□□ -0.6
SRGAP1-202ENST00000537556 CENPJQ9HC77 1338 aaPredicted RBP11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 CECR2Q9BXF3 1484 aa11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 CALD1Q05682 793 aaKnown RBP11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 SMARCA2P51531 1590 aa11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 SIN3AQ96ST3 1273 aa11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 BACH2Q9BYV9 841 aa11.3□□□□□ -0.6
SRGAP1-202ENST00000537556 L1TD1Q5T7N2 865 aaKnown RBP11.29□□□□□ -0.6
SRGAP1-202ENST00000537556 CLCN1P35523 988 aa11.28□□□□□ -0.6
SRGAP1-202ENST00000537556 PDCL3Q9H2J4 239 aa11.28□□□□□ -0.6
SRGAP1-202ENST00000537556 RNF123Q5XPI4 1314 aa11.27□□□□□ -0.61
SRGAP1-202ENST00000537556 RAB3GAP2Q9H2M9 1393 aa11.26□□□□□ -0.61
SRGAP1-202ENST00000537556 PEG3Q9GZU2 1588 aa11.26□□□□□ -0.61
SRGAP1-202ENST00000537556 SMG6Q86US8 1419 aaKnown RBP11.25□□□□□ -0.61
SRGAP1-202ENST00000537556 CCNB3Q8WWL7 1395 aa11.24□□□□□ -0.61
SRGAP1-202ENST00000537556 KIF21BO75037 1637 aa11.24□□□□□ -0.61
SRGAP1-202ENST00000537556 RUSC2Q8N2Y8 1516 aa11.24□□□□□ -0.61
SRGAP1-202ENST00000537556 PRDM4Q9UKN5 801 aa11.23□□□□□ -0.61
SRGAP1-202ENST00000537556 BAZ1BQ9UIG0 1483 aaKnown RBP11.23□□□□□ -0.61
SRGAP1-202ENST00000537556 FAM9BQ8IZU0 186 aa11.22□□□□□ -0.61
SRGAP1-202ENST00000537556 BCL11BQ9C0K0 894 aaPredicted RBP11.22□□□□□ -0.61
SRGAP1-202ENST00000537556 NUDCQ9Y266 331 aa11.22□□□□□ -0.61
SRGAP1-202ENST00000537556 FRAT2O75474 233 aaPredicted RBP11.21□□□□□ -0.62
SRGAP1-202ENST00000537556 TPM2P07951 284 aa11.21□□□□□ -0.62
SRGAP1-202ENST00000537556 AKNAQ7Z591 1439 aa11.2□□□□□ -0.62
SRGAP1-202ENST00000537556 TAF7LQ5H9L4 462 aa11.19□□□□□ -0.62
SRGAP1-202ENST00000537556 MRS2Q9HD23 443 aa11.19□□□□□ -0.62
SRGAP1-202ENST00000537556 SETD5Q9C0A6 1442 aa11.19□□□□□ -0.62
SRGAP1-202ENST00000537556 RGS3P49796 1198 aa11.17□□□□□ -0.62
SRGAP1-202ENST00000537556 MROH2BQ7Z745 1585 aa11.17□□□□□ -0.62
SRGAP1-202ENST00000537556 NCLP19338 710 aaKnown RBP11.16□□□□□ -0.62
SRGAP1-202ENST00000537556 BAZ1AQ9NRL2 1556 aaPredicted RBP11.16□□□□□ -0.62
SRGAP1-202ENST00000537556 TONSLQ96HA7 1378 aa11.15□□□□□ -0.62
SRGAP1-202ENST00000537556 WIZO95785 1651 aa11.15□□□□□ -0.62
SRGAP1-202ENST00000537556 KANK4Q5T7N3 995 aaPredicted RBP11.15□□□□□ -0.62
SRGAP1-202ENST00000537556 SMARCA4P51532 1647 aa11.14□□□□□ -0.63
SRGAP1-202ENST00000537556 CCDC184Q52MB2 194 aa11.14□□□□□ -0.63
SRGAP1-202ENST00000537556 PRKRIP1Q9H875 184 aaPredicted RBP11.14□□□□□ -0.63
SRGAP1-202ENST00000537556 HMGXB3Q12766 1538 aa11.14□□□□□ -0.63
SRGAP1-202ENST00000537556 FHAD1B1AJZ9 1412 aa11.14□□□□□ -0.63
SRGAP1-202ENST00000537556 MAP7D2Q96T17 732 aa11.13□□□□□ -0.63
SRGAP1-202ENST00000537556 SLC4A3P48751 1232 aa11.13□□□□□ -0.63
SRGAP1-202ENST00000537556 BBXQ8WY36 941 aaPredicted RBP11.12□□□□□ -0.63
SRGAP1-202ENST00000537556 CNTLNQ9NXG0 1405 aa11.12□□□□□ -0.63
SRGAP1-202ENST00000537556 ZNF326Q5BKZ1 582 aaKnown RBP11.1□□□□□ -0.63
SRGAP1-202ENST00000537556 POGKQ9P215 609 aa11.1□□□□□ -0.63
SRGAP1-202ENST00000537556 GOLGA6L3A6NEY3 463 aa11.1□□□□□ -0.63
SRGAP1-202ENST00000537556 SMAP1Q8IYB5 467 aaPredicted RBP11.09□□□□□ -0.63
SRGAP1-202ENST00000537556 CANXP27824 592 aaKnown RBP11.09□□□□□ -0.63
SRGAP1-202ENST00000537556 NAP1L2Q9ULW6 460 aaPredicted RBP11.08□□□□□ -0.64
SRGAP1-202ENST00000537556 NCOA2Q15596 1464 aa11.08□□□□□ -0.64
SRGAP1-202ENST00000537556 XRCC6P12956 609 aaKnown RBP eCLIP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms