RNA–Protein interactions for RNA: ENST00000533730.5

CASP4-212, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 1,214 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-212ENST00000533730 CECR2Q9BXF3 1484 aa14.12□□□□□ -0.15
CASP4-212ENST00000533730 PRKAR2AP13861 404 aaKnown RBP14.1□□□□□ -0.15
CASP4-212ENST00000533730 SMARCA4P51532 1647 aa14.09□□□□□ -0.15
CASP4-212ENST00000533730 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
CASP4-212ENST00000533730 KLHL34Q8N239 644 aa14.03□□□□□ -0.16
CASP4-212ENST00000533730 ZBTB47Q9UFB7 747 aaPredicted RBP14.03□□□□□ -0.16
CASP4-212ENST00000533730 SMARCA2P51531 1590 aa14.03□□□□□ -0.16
CASP4-212ENST00000533730 FARP1Q9Y4F1 1045 aaPredicted RBP14.01□□□□□ -0.17
CASP4-212ENST00000533730 NCAPD3P42695 1498 aa14□□□□□ -0.17
CASP4-212ENST00000533730 ATAD2BQ9ULI0 1458 aa14□□□□□ -0.17
CASP4-212ENST00000533730 MROH2BQ7Z745 1585 aa13.99□□□□□ -0.17
CASP4-212ENST00000533730 PEG3Q9GZU2 1588 aa13.99□□□□□ -0.17
CASP4-212ENST00000533730 HAP1P54257 671 aaPredicted RBP13.97□□□□□ -0.17
CASP4-212ENST00000533730 SPOCK2Q92563 424 aa13.97□□□□□ -0.17
CASP4-212ENST00000533730 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
CASP4-212ENST00000533730 NUBP1P53384 320 aa13.94□□□□□ -0.18
CASP4-212ENST00000533730 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
CASP4-212ENST00000533730 BAZ1BQ9UIG0 1483 aaKnown RBP13.91□□□□□ -0.18
CASP4-212ENST00000533730 RSF1Q96T23 1441 aaPredicted RBP13.88□□□□□ -0.19
CASP4-212ENST00000533730 RASEFQ8IZ41 740 aa13.84□□□□□ -0.19
CASP4-212ENST00000533730 WIZO95785 1651 aa13.83□□□□□ -0.2
CASP4-212ENST00000533730 BCANQ96GW7 911 aa13.83□□□□□ -0.2
CASP4-212ENST00000533730 PRKCSHP14314 528 aaPredicted RBP13.82□□□□□ -0.2
CASP4-212ENST00000533730 POTEHQ6S545 545 aa13.82□□□□□ -0.2
CASP4-212ENST00000533730 PKD2Q13563 968 aa13.76□□□□□ -0.21
CASP4-212ENST00000533730 C19orf67A6NJJ6 358 aa13.75□□□□□ -0.21
CASP4-212ENST00000533730 TOP2AP11388 1531 aaKnown RBP13.74□□□□□ -0.21
CASP4-212ENST00000533730 GSE1Q14687 1217 aa13.73□□□□□ -0.21
CASP4-212ENST00000533730 FAM212AQ96EL1 285 aa13.73□□□□□ -0.21
CASP4-212ENST00000533730 DCAF8Q5TAQ9 597 aa13.72□□□□□ -0.21
CASP4-212ENST00000533730 VSIG10Q8N0Z9 540 aa13.72□□□□□ -0.21
CASP4-212ENST00000533730 TAOK2Q9UL54 1235 aa13.71□□□□□ -0.21
CASP4-212ENST00000533730 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
CASP4-212ENST00000533730 CIZ1Q9ULV3 898 aaPredicted RBP13.7□□□□□ -0.22
CASP4-212ENST00000533730 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
CASP4-212ENST00000533730 CCDC61Q9Y6R9 512 aa13.67□□□□□ -0.22
CASP4-212ENST00000533730 HAX1O00165 279 aa13.64□□□□□ -0.23
CASP4-212ENST00000533730 EVX2Q03828 476 aa13.64□□□□□ -0.23
CASP4-212ENST00000533730 LAMC3Q9Y6N6 1575 aa13.63□□□□□ -0.23
CASP4-212ENST00000533730 PAK3O75914 559 aaPredicted RBP13.63□□□□□ -0.23
CASP4-212ENST00000533730 ZRANB1Q9UGI0 708 aa13.62□□□□□ -0.23
CASP4-212ENST00000533730 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
CASP4-212ENST00000533730 CHRM1P11229 460 aaPredicted RBP13.6□□□□□ -0.23
CASP4-212ENST00000533730 CADPSQ9ULU8 1353 aa13.59□□□□□ -0.23
CASP4-212ENST00000533730 ECM2O94769 699 aaPredicted RBP13.58□□□□□ -0.24
CASP4-212ENST00000533730 NESP48681 1621 aa13.57□□□□□ -0.24
CASP4-212ENST00000533730 SUPT5HO00267 1087 aaKnown RBP13.56□□□□□ -0.24
CASP4-212ENST00000533730 PYGBP11216 843 aa13.56□□□□□ -0.24
CASP4-212ENST00000533730 ZNF579Q8NAF0 562 aaKnown RBP13.56□□□□□ -0.24
CASP4-212ENST00000533730 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
CASP4-212ENST00000533730 ERCC6Q03468 1493 aa13.55□□□□□ -0.24
CASP4-212ENST00000533730 KDM2AQ9Y2K7 1162 aa13.55□□□□□ -0.24
CASP4-212ENST00000533730 PDS5BQ9NTI5 1447 aa13.55□□□□□ -0.24
CASP4-212ENST00000533730 CFTRP13569 1480 aa13.53□□□□□ -0.24
CASP4-212ENST00000533730 TPRNQ4KMQ1 711 aa13.52□□□□□ -0.25
CASP4-212ENST00000533730 BBXQ8WY36 941 aaPredicted RBP13.52□□□□□ -0.25
CASP4-212ENST00000533730 KIF12Q96FN5 646 aa13.52□□□□□ -0.25
CASP4-212ENST00000533730 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.25
CASP4-212ENST00000533730 RNF25Q96BH1 459 aaPredicted RBP13.51□□□□□ -0.25
CASP4-212ENST00000533730 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
CASP4-212ENST00000533730 RGL2O15211 777 aa13.5□□□□□ -0.25
CASP4-212ENST00000533730 PAXIP1Q6ZW49 1069 aaPredicted RBP13.48□□□□□ -0.25
CASP4-212ENST00000533730 MAP3K13O43283 966 aa13.47□□□□□ -0.25
CASP4-212ENST00000533730 SGIP1Q9BQI5 828 aa13.46□□□□□ -0.25
CASP4-212ENST00000533730 CFAP44Q96MT7 982 aa13.45□□□□□ -0.26
CASP4-212ENST00000533730 FANCD2Q9BXW9 1451 aa13.43□□□□□ -0.26
CASP4-212ENST00000533730 PRDM2Q13029 1718 aa13.43□□□□□ -0.26
CASP4-212ENST00000533730 KIF21AQ7Z4S6 1674 aa13.43□□□□□ -0.26
CASP4-212ENST00000533730 CEP164Q9UPV0 1460 aa13.42□□□□□ -0.26
CASP4-212ENST00000533730 CUX2O14529 1486 aa13.42□□□□□ -0.26
CASP4-212ENST00000533730 PCDHB13Q9Y5F0 798 aa13.4□□□□□ -0.26
CASP4-212ENST00000533730 RIOK3O14730 519 aaKnown RBP13.39□□□□□ -0.27
CASP4-212ENST00000533730 IFNL1Q8IU54 200 aa13.39□□□□□ -0.27
CASP4-212ENST00000533730 THOC2Q8NI27 1593 aaKnown RBP13.39□□□□□ -0.27
CASP4-212ENST00000533730 MRC2Q9UBG0 1479 aa13.38□□□□□ -0.27
CASP4-212ENST00000533730 CLCN6P51797 869 aa13.38□□□□□ -0.27
CASP4-212ENST00000533730 ZNF467Q7Z7K2 595 aaPredicted RBP13.38□□□□□ -0.27
CASP4-212ENST00000533730 MS4A3Q96HJ5 214 aa13.38□□□□□ -0.27
CASP4-212ENST00000533730 PCDHB8Q9UN66 801 aa13.37□□□□□ -0.27
CASP4-212ENST00000533730 GALR2O43603 387 aaPredicted RBP13.34□□□□□ -0.27
CASP4-212ENST00000533730 GABBR2O75899 941 aa13.33□□□□□ -0.28
CASP4-212ENST00000533730 SP7Q8TDD2 431 aaPredicted RBP13.33□□□□□ -0.28
CASP4-212ENST00000533730 WDR62O43379 1518 aa13.33□□□□□ -0.28
CASP4-212ENST00000533730 VGFO15240 615 aaPredicted RBP13.32□□□□□ -0.28
CASP4-212ENST00000533730 TSHZ2Q9NRE2 1034 aa13.3□□□□□ -0.28
CASP4-212ENST00000533730 TRPC6Q9Y210 931 aa13.29□□□□□ -0.28
CASP4-212ENST00000533730 ABCC8Q09428 1581 aa13.28□□□□□ -0.28
CASP4-212ENST00000533730 SPRYD3Q8NCJ5 442 aa13.28□□□□□ -0.28
CASP4-212ENST00000533730 PDAP1Q13442 181 aaKnown RBP13.27□□□□□ -0.29
CASP4-212ENST00000533730 URB2Q14146 1524 aaKnown RBP13.27□□□□□ -0.29
CASP4-212ENST00000533730 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.25□□□□□ -0.29
CASP4-212ENST00000533730 ZFP91Q96JP5 570 aaPredicted RBP13.25□□□□□ -0.29
CASP4-212ENST00000533730 PSEN1P49768 467 aa13.24□□□□□ -0.29
CASP4-212ENST00000533730 DNMBPQ6XZF7 1577 aa13.23□□□□□ -0.29
CASP4-212ENST00000533730 TOPBP1Q92547 1522 aa13.22□□□□□ -0.29
CASP4-212ENST00000533730 TIE1P35590 1138 aa13.21□□□□□ -0.29
CASP4-212ENST00000533730 HS6ST3Q8IZP7 471 aa13.21□□□□□ -0.29
CASP4-212ENST00000533730 CHGAP10645 457 aaKnown RBP13.19□□□□□ -0.3
CASP4-212ENST00000533730 BMP2KQ9NSY1 1161 aaPredicted RBP13.18□□□□□ -0.3
CASP4-212ENST00000533730 STK25O00506 426 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms