RNA–Protein interactions for RNA: ENST00000533246.5

BDNF-218, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,000 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-218ENST00000533246 CCDC88BA6NC98 1476 aa16.71■□□□□ 0.27
BDNF-218ENST00000533246 KANK4Q5T7N3 995 aaPredicted RBP16.7■□□□□ 0.26
BDNF-218ENST00000533246 SENP3Q9H4L4 574 aaPredicted RBP16.7■□□□□ 0.26
BDNF-218ENST00000533246 ABCC8Q09428 1581 aa16.7■□□□□ 0.26
BDNF-218ENST00000533246 MRS2Q9HD23 443 aa16.69■□□□□ 0.26
BDNF-218ENST00000533246 CHMP7Q8WUX9 453 aaPredicted RBP16.69■□□□□ 0.26
BDNF-218ENST00000533246 NPM2Q86SE8 214 aaKnown RBP16.69■□□□□ 0.26
BDNF-218ENST00000533246 PODXL2Q9NZ53 605 aa16.67■□□□□ 0.26
BDNF-218ENST00000533246 BAZ1AQ9NRL2 1556 aaPredicted RBP16.65■□□□□ 0.26
BDNF-218ENST00000533246 NBR1Q14596 966 aa16.65■□□□□ 0.26
BDNF-218ENST00000533246 TSPY4P0CV99 314 aa16.64■□□□□ 0.25
BDNF-218ENST00000533246 TSPY10P0CW01 314 aa16.64■□□□□ 0.25
BDNF-218ENST00000533246 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
BDNF-218ENST00000533246 TMC1Q8TDI8 760 aa16.64■□□□□ 0.25
BDNF-218ENST00000533246 KIF27Q86VH2 1401 aa16.63■□□□□ 0.25
BDNF-218ENST00000533246 RGL3Q3MIN7 710 aa16.62■□□□□ 0.25
BDNF-218ENST00000533246 KCNH8Q96L42 1107 aa16.61■□□□□ 0.25
BDNF-218ENST00000533246 CANXP27824 592 aaKnown RBP16.61■□□□□ 0.25
BDNF-218ENST00000533246 EIF4G2P78344 907 aaKnown RBP eCLIP16.6■□□□□ 0.25
BDNF-218ENST00000533246 DEKP35659 375 aaKnown RBP16.59■□□□□ 0.25
BDNF-218ENST00000533246 PKNOX2Q96KN3 472 aa16.57■□□□□ 0.24
BDNF-218ENST00000533246 PLPPR3Q6T4P5 718 aa16.56■□□□□ 0.24
BDNF-218ENST00000533246 TSHZ2Q9NRE2 1034 aa16.52■□□□□ 0.24
BDNF-218ENST00000533246 CCNB3Q8WWL7 1395 aa16.51■□□□□ 0.23
BDNF-218ENST00000533246 SUPT16HQ9Y5B9 1047 aaKnown RBP16.51■□□□□ 0.23
BDNF-218ENST00000533246 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
BDNF-218ENST00000533246 CARMIL1Q5VZK9 1371 aa16.5■□□□□ 0.23
BDNF-218ENST00000533246 RUSC2Q8N2Y8 1516 aa16.5■□□□□ 0.23
BDNF-218ENST00000533246 WIZO95785 1651 aa16.49■□□□□ 0.23
BDNF-218ENST00000533246 PLEKHD1A6NEE1 506 aa16.48■□□□□ 0.23
BDNF-218ENST00000533246 CUX2O14529 1486 aa16.48■□□□□ 0.23
BDNF-218ENST00000533246 ANP32AP39687 249 aaKnown RBP16.48■□□□□ 0.23
BDNF-218ENST00000533246 FOXD1Q16676 465 aa16.48■□□□□ 0.23
BDNF-218ENST00000533246 VPS8Q8N3P4 1428 aa16.44■□□□□ 0.22
BDNF-218ENST00000533246 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
BDNF-218ENST00000533246 NPM1P06748 294 aaKnown RBP eCLIP16.42■□□□□ 0.22
BDNF-218ENST00000533246 STAG3Q9UJ98 1225 aa16.42■□□□□ 0.22
BDNF-218ENST00000533246 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
BDNF-218ENST00000533246 NEFMP07197 916 aa16.37■□□□□ 0.21
BDNF-218ENST00000533246 A0A0U1RQG5 324 aaPredicted RBP16.37■□□□□ 0.21
BDNF-218ENST00000533246 CARD11Q9BXL7 1154 aa16.37■□□□□ 0.21
BDNF-218ENST00000533246 ZBTB47Q9UFB7 747 aaPredicted RBP16.37■□□□□ 0.21
BDNF-218ENST00000533246 UBE2Q2Q8WVN8 375 aa16.36■□□□□ 0.21
BDNF-218ENST00000533246 WDR43Q15061 677 aaKnown RBP eCLIP16.35■□□□□ 0.21
BDNF-218ENST00000533246 RAPGEF2Q9Y4G8 1499 aa16.33■□□□□ 0.21
BDNF-218ENST00000533246 RBM19Q9Y4C8 960 aaKnown RBP16.33■□□□□ 0.21
BDNF-218ENST00000533246 RAB3GAP2Q9H2M9 1393 aa16.32■□□□□ 0.2
BDNF-218ENST00000533246 VSIG10Q8N0Z9 540 aa16.31■□□□□ 0.2
BDNF-218ENST00000533246 ERICH6BQ5W0A0 696 aa16.31■□□□□ 0.2
BDNF-218ENST00000533246 ESF1Q9H501 851 aaKnown RBP16.31■□□□□ 0.2
BDNF-218ENST00000533246 B4GALNT3Q6L9W6 998 aa16.28■□□□□ 0.2
BDNF-218ENST00000533246 DCAF11Q8TEB1 546 aa16.28■□□□□ 0.2
BDNF-218ENST00000533246 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
BDNF-218ENST00000533246 HSPA5P11021 654 aaKnown RBP16.27■□□□□ 0.19
BDNF-218ENST00000533246 FHAD1B1AJZ9 1412 aa16.26■□□□□ 0.19
BDNF-218ENST00000533246 NEUROD2Q15784 382 aa16.26■□□□□ 0.19
BDNF-218ENST00000533246 CC2D1BQ5T0F9 858 aaKnown RBP16.24■□□□□ 0.19
BDNF-218ENST00000533246 EIF4G1Q04637 1599 aaKnown RBP16.24■□□□□ 0.19
BDNF-218ENST00000533246 TNNT2P45379 298 aaPredicted RBP16.23■□□□□ 0.19
BDNF-218ENST00000533246 ARXQ96QS3 562 aa16.23■□□□□ 0.19
BDNF-218ENST00000533246 PPP1R15AO75807 674 aaPredicted RBP16.22■□□□□ 0.19
BDNF-218ENST00000533246 TOP2AP11388 1531 aaKnown RBP16.21■□□□□ 0.19
BDNF-218ENST00000533246 PKD2Q13563 968 aa16.2■□□□□ 0.18
BDNF-218ENST00000533246 FHOD3Q2V2M9 1422 aa16.2■□□□□ 0.18
BDNF-218ENST00000533246 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
BDNF-218ENST00000533246 TIMELESSQ9UNS1 1208 aa16.18■□□□□ 0.18
BDNF-218ENST00000533246 MPHOSPH9Q99550 1183 aa16.18■□□□□ 0.18
BDNF-218ENST00000533246 KNSTRNQ9Y448 316 aa16.17■□□□□ 0.18
BDNF-218ENST00000533246 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.16■□□□□ 0.18
BDNF-218ENST00000533246 L3MBTL2Q969R5 705 aa16.16■□□□□ 0.18
BDNF-218ENST00000533246 PPM1GO15355 546 aaPredicted RBP16.16■□□□□ 0.18
BDNF-218ENST00000533246 DHX57Q6P158 1386 aaKnown RBP16.14■□□□□ 0.17
BDNF-218ENST00000533246 HSP90AA1P07900 732 aaKnown RBP16.13■□□□□ 0.17
BDNF-218ENST00000533246 ARHGAP35Q9NRY4 1499 aa16.13■□□□□ 0.17
BDNF-218ENST00000533246 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
BDNF-218ENST00000533246 ERCC6Q03468 1493 aa16.12■□□□□ 0.17
BDNF-218ENST00000533246 SMARCA2P51531 1590 aa16.1■□□□□ 0.17
BDNF-218ENST00000533246 PPP4R2Q9NY27 417 aa16.1■□□□□ 0.17
BDNF-218ENST00000533246 UPF2Q9HAU5 1272 aaKnown RBP16.1■□□□□ 0.17
BDNF-218ENST00000533246 RGS3P49796 1198 aa16.08■□□□□ 0.16
BDNF-218ENST00000533246 SAFB2Q14151 953 aaKnown RBP eCLIP16.08■□□□□ 0.16
BDNF-218ENST00000533246 CCER2I3L3R5 266 aa16.07■□□□□ 0.16
BDNF-218ENST00000533246 SMARCA4P51532 1647 aa16.06■□□□□ 0.16
BDNF-218ENST00000533246 HNRNPMP52272 730 aaKnown RBP eCLIP16.06■□□□□ 0.16
BDNF-218ENST00000533246 FRAT1Q92837 279 aaPredicted RBP16.05■□□□□ 0.16
BDNF-218ENST00000533246 NUP155O75694 1391 aa16.03■□□□□ 0.16
BDNF-218ENST00000533246 IL27Q8NEV9 243 aa16.03■□□□□ 0.16
BDNF-218ENST00000533246 LAS1LQ9Y4W2 734 aaKnown RBP16.02■□□□□ 0.15
BDNF-218ENST00000533246 GGT6Q6P531 493 aa16.02■□□□□ 0.15
BDNF-218ENST00000533246 ZBTB7CA1YPR0 619 aa16.01■□□□□ 0.15
BDNF-218ENST00000533246 IGF1RP08069 1367 aa16.01■□□□□ 0.15
BDNF-218ENST00000533246 FMN1Q68DA7 1419 aa16■□□□□ 0.15
BDNF-218ENST00000533246 PDE4CQ08493 712 aa15.99■□□□□ 0.15
BDNF-218ENST00000533246 C14orf37Q86TY3 774 aa15.99■□□□□ 0.15
BDNF-218ENST00000533246 CDCA8Q53HL2 280 aa15.98■□□□□ 0.15
BDNF-218ENST00000533246 TMF1P82094 1093 aa15.98■□□□□ 0.15
BDNF-218ENST00000533246 NOP58Q9Y2X3 529 aaKnown RBP15.98■□□□□ 0.15
BDNF-218ENST00000533246 U2SURPO15042 1029 aaKnown RBP15.97■□□□□ 0.15
BDNF-218ENST00000533246 MLECQ14165 292 aa15.97■□□□□ 0.15
BDNF-218ENST00000533246 JPH4Q96JJ6 628 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms