RNA–Protein interactions for RNA: ENST00000532463.5

CTNND1-231, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,749 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-231	ENST00000532463	TPRN	Q4KMQ1	711 aa		10.59	□□□□□ -0.71
CTNND1-231	ENST00000532463	TMC1	Q8TDI8	760 aa		10.59	□□□□□ -0.71
CTNND1-231	ENST00000532463	GOLGA6L1	Q8N7Z2	621 aa		10.58	□□□□□ -0.72
CTNND1-231	ENST00000532463	NCBP3	Q53F19	620 aa	Known RBP	10.57	□□□□□ -0.72
CTNND1-231	ENST00000532463	USP35	Q9P2H5	1018 aa		10.57	□□□□□ -0.72
CTNND1-231	ENST00000532463	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.56	□□□□□ -0.72
CTNND1-231	ENST00000532463	KIAA2012	Q0VF49	1180 aa		10.55	□□□□□ -0.72
CTNND1-231	ENST00000532463	DRC7	Q8IY82	874 aa		10.54	□□□□□ -0.72
CTNND1-231	ENST00000532463	GOLGA6L4	A6NEF3	574 aa		10.54	□□□□□ -0.72
CTNND1-231	ENST00000532463	LAS1L	Q9Y4W2	734 aa	Known RBP	10.53	□□□□□ -0.72
CTNND1-231	ENST00000532463	NOP58	Q9Y2X3	529 aa	Known RBP	10.53	□□□□□ -0.72
CTNND1-231	ENST00000532463		A0A0U1RQG5	324 aa	Predicted RBP	10.52	□□□□□ -0.72
CTNND1-231	ENST00000532463	HSP90AB1	P08238	724 aa	Known RBP	10.5	□□□□□ -0.73
CTNND1-231	ENST00000532463	ABCC9	O60706	1549 aa		10.5	□□□□□ -0.73
CTNND1-231	ENST00000532463	IRX6	P78412	446 aa	Predicted RBP	10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	PRM3	Q9NNZ6	103 aa		10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	DEK	P35659	375 aa	Known RBP	10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	MRS2	Q9HD23	443 aa		10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	CLSTN1	O94985	981 aa		10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	ARID3A	Q99856	593 aa		10.49	□□□□□ -0.73
CTNND1-231	ENST00000532463	DDX10	Q13206	875 aa	Known RBP	10.48	□□□□□ -0.73
CTNND1-231	ENST00000532463	TONSL	Q96HA7	1378 aa		10.48	□□□□□ -0.73
CTNND1-231	ENST00000532463	FGD1	P98174	961 aa		10.47	□□□□□ -0.73
CTNND1-231	ENST00000532463	ESF1	Q9H501	851 aa	Known RBP	10.44	□□□□□ -0.74
CTNND1-231	ENST00000532463	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.44	□□□□□ -0.74
CTNND1-231	ENST00000532463	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.43	□□□□□ -0.74
CTNND1-231	ENST00000532463	STAG3	Q9UJ98	1225 aa		10.43	□□□□□ -0.74
CTNND1-231	ENST00000532463	APP	P05067	770 aa		10.43	□□□□□ -0.74
CTNND1-231	ENST00000532463	HSCB	Q8IWL3	235 aa		10.42	□□□□□ -0.74
CTNND1-231	ENST00000532463	VSIG10	Q8N0Z9	540 aa		10.42	□□□□□ -0.74
CTNND1-231	ENST00000532463		A0A0G2JS52	829 aa		10.41	□□□□□ -0.74
CTNND1-231	ENST00000532463	TAOK2	Q9UL54	1235 aa		10.41	□□□□□ -0.74
CTNND1-231	ENST00000532463	CHGA	P10645	457 aa	Known RBP	10.4	□□□□□ -0.74
CTNND1-231	ENST00000532463	KCNJ4	P48050	445 aa		10.4	□□□□□ -0.74
CTNND1-231	ENST00000532463	RRP12	Q5JTH9	1297 aa	Known RBP	10.4	□□□□□ -0.75
CTNND1-231	ENST00000532463	MIER1	Q8N108	512 aa		10.39	□□□□□ -0.75
CTNND1-231	ENST00000532463	CHMP4B	Q9H444	224 aa	Known RBP	10.39	□□□□□ -0.75
CTNND1-231	ENST00000532463	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.39	□□□□□ -0.75
CTNND1-231	ENST00000532463	FTSJ3	Q8IY81	847 aa	Known RBP	10.39	□□□□□ -0.75
CTNND1-231	ENST00000532463	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.38	□□□□□ -0.75	4e-7	■□□□□ 8.4
CTNND1-231	ENST00000532463	TPM4	P67936	248 aa		10.38	□□□□□ -0.75
CTNND1-231	ENST00000532463	ZBTB7C	A1YPR0	619 aa		10.38	□□□□□ -0.75
CTNND1-231	ENST00000532463	GOLGA6L3	A6NEY3	463 aa		10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	RSPH6A	Q9H0K4	717 aa		10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	MCC	P23508	829 aa		10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	PATL2	C9JE40	543 aa	Known RBP	10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	GPS2	Q13227	327 aa		10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	SYAP1	Q96A49	352 aa	Predicted RBP	10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	GBP4	Q96PP9	640 aa		10.36	□□□□□ -0.75
CTNND1-231	ENST00000532463	HTATSF1	O43719	755 aa	Known RBP	10.35	□□□□□ -0.75
CTNND1-231	ENST00000532463	CFAP44	Q96MT7	982 aa		10.35	□□□□□ -0.75
CTNND1-231	ENST00000532463	CEP89	Q96ST8	783 aa		10.34	□□□□□ -0.75
CTNND1-231	ENST00000532463	RGS3	P49796	1198 aa		10.34	□□□□□ -0.75
CTNND1-231	ENST00000532463	PPP4R2	Q9NY27	417 aa		10.34	□□□□□ -0.75
CTNND1-231	ENST00000532463	TPM3	P06753	285 aa		10.34	□□□□□ -0.75
CTNND1-231	ENST00000532463	GNL2	Q13823	731 aa	Known RBP	10.33	□□□□□ -0.76
CTNND1-231	ENST00000532463	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.33	□□□□□ -0.76
CTNND1-231	ENST00000532463	CCDC34	Q96HJ3	373 aa		10.32	□□□□□ -0.76
CTNND1-231	ENST00000532463	MS4A1	P11836	297 aa		10.32	□□□□□ -0.76
CTNND1-231	ENST00000532463	STK11IP	Q8N1F8	1099 aa		10.32	□□□□□ -0.76
CTNND1-231	ENST00000532463	ARID3C	A6NKF2	412 aa		10.31	□□□□□ -0.76
CTNND1-231	ENST00000532463	P3H3	Q8IVL6	736 aa		10.31	□□□□□ -0.76
CTNND1-231	ENST00000532463	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.31	□□□□□ -0.76
CTNND1-231	ENST00000532463	OS9	Q13438	667 aa	Predicted RBP	10.31	□□□□□ -0.76
CTNND1-231	ENST00000532463	PDE4C	Q08493	712 aa		10.3	□□□□□ -0.76
CTNND1-231	ENST00000532463	NOM1	Q5C9Z4	860 aa	Known RBP	10.3	□□□□□ -0.76
CTNND1-231	ENST00000532463	CFAP53	Q96M91	514 aa		10.3	□□□□□ -0.76
CTNND1-231	ENST00000532463	HMMR	O75330	724 aa		10.3	□□□□□ -0.76
CTNND1-231	ENST00000532463	TAF7L	Q5H9L4	462 aa		10.3	□□□□□ -0.76
CTNND1-231	ENST00000532463	GOLGA2	Q08379	1002 aa		10.29	□□□□□ -0.76
CTNND1-231	ENST00000532463	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.29	□□□□□ -0.76
CTNND1-231	ENST00000532463	TEX35	Q5T0J7	233 aa		10.28	□□□□□ -0.76
CTNND1-231	ENST00000532463	CCDC70	Q6NSX1	233 aa		10.27	□□□□□ -0.76
CTNND1-231	ENST00000532463	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.26	□□□□□ -0.77
CTNND1-231	ENST00000532463	HSP90B1	P14625	803 aa	Known RBP	10.25	□□□□□ -0.77
CTNND1-231	ENST00000532463	SENP3-EIF4A1	A0A087X0R7	540 aa		10.25	□□□□□ -0.77
CTNND1-231	ENST00000532463	CCDC191	Q8NCU4	936 aa		10.25	□□□□□ -0.77
CTNND1-231	ENST00000532463	GZF1	Q9H116	711 aa	Predicted RBP	10.25	□□□□□ -0.77
CTNND1-231	ENST00000532463	SPRYD3	Q8NCJ5	442 aa		10.24	□□□□□ -0.77
CTNND1-231	ENST00000532463	CALD1	Q05682	793 aa	Known RBP	10.24	□□□□□ -0.77
CTNND1-231	ENST00000532463	CSPP1	Q1MSJ5	1256 aa		10.24	□□□□□ -0.77
CTNND1-231	ENST00000532463	ISY1	Q9ULR0	285 aa	Known RBP	10.24	□□□□□ -0.77
CTNND1-231	ENST00000532463	NPHP1	O15259	732 aa		10.23	□□□□□ -0.77
CTNND1-231	ENST00000532463	CDR1	P51861	262 aa		10.22	□□□□□ -0.77
CTNND1-231	ENST00000532463	C14orf37	Q86TY3	774 aa		10.22	□□□□□ -0.77
CTNND1-231	ENST00000532463	MAPK8IP3	Q9UPT6	1336 aa		10.21	□□□□□ -0.77
CTNND1-231	ENST00000532463	PHF14	O94880	888 aa		10.21	□□□□□ -0.77
CTNND1-231	ENST00000532463	MAP7D2	Q96T17	732 aa		10.21	□□□□□ -0.77
CTNND1-231	ENST00000532463	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.21	□□□□□ -0.78
CTNND1-231	ENST00000532463	FRAT1	Q92837	279 aa	Predicted RBP	10.21	□□□□□ -0.78
CTNND1-231	ENST00000532463	RDX	P35241	583 aa	Known RBP	10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	KIAA1211	Q6ZU35	1233 aa		10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	CCAR2	Q8N163	923 aa	Known RBP	10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	CSRNP3	Q8WYN3	585 aa		10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	FBXO3	Q9UK99	471 aa		10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	DCAF1	Q9Y4B6	1507 aa		10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	TSR1	Q2NL82	804 aa	Known RBP	10.2	□□□□□ -0.78
CTNND1-231	ENST00000532463	PODXL2	Q9NZ53	605 aa		10.19	□□□□□ -0.78
CTNND1-231	ENST00000532463	FBLN2	P98095	1184 aa		10.19	□□□□□ -0.78
CTNND1-231	ENST00000532463	MEX3C	Q5U5Q3	659 aa	Known RBP	10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 16 ms