RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 SHROOM2Q13796 1616 aa16.34■□□□□ 0.21
NEDD8-206ENST00000531430 BIVM-ERCC5R4GMW8 1640 aa16.34■□□□□ 0.21
NEDD8-206ENST00000531430 KIF13AQ9H1H9 1805 aa16.31■□□□□ 0.2
NEDD8-206ENST00000531430 ABCC10Q5T3U5 1492 aa16.26■□□□□ 0.19
NEDD8-206ENST00000531430 KDM4FA0A1W2PPD8 638 aa16.21■□□□□ 0.19
NEDD8-206ENST00000531430 IGF1RP08069 1367 aa16.2■□□□□ 0.18
NEDD8-206ENST00000531430 TSPOAP1O95153 1857 aa16.2■□□□□ 0.18
NEDD8-206ENST00000531430 RUSC2Q8N2Y8 1516 aa16.19■□□□□ 0.18
NEDD8-206ENST00000531430 KIAA0586Q9BVV6 1533 aa16.18■□□□□ 0.18
NEDD8-206ENST00000531430 PTPRGP23470 1445 aa16.18■□□□□ 0.18
NEDD8-206ENST00000531430 ADCY10Q96PN6 1610 aa16.17■□□□□ 0.18
NEDD8-206ENST00000531430 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
NEDD8-206ENST00000531430 MAPKBP1O60336 1514 aa16.16■□□□□ 0.18
NEDD8-206ENST00000531430 DIP2BQ9P265 1576 aa16.15■□□□□ 0.18
NEDD8-206ENST00000531430 KDM6BO15054 1643 aa16.15■□□□□ 0.18
NEDD8-206ENST00000531430 CARMIL1Q5VZK9 1371 aa16.12■□□□□ 0.17
NEDD8-206ENST00000531430 CARMIL2Q6F5E8 1435 aa16.1■□□□□ 0.17
NEDD8-206ENST00000531430 TNIKQ9UKE5 1360 aa16.09■□□□□ 0.17
NEDD8-206ENST00000531430 CUL7Q14999 1698 aa16.05■□□□□ 0.16
NEDD8-206ENST00000531430 ASXL2Q76L83 1435 aa16.04■□□□□ 0.16
NEDD8-206ENST00000531430 ILDR1Q86SU0 546 aaPredicted RBP16.04■□□□□ 0.16
NEDD8-206ENST00000531430 ABCC2Q92887 1545 aa16.01■□□□□ 0.15
NEDD8-206ENST00000531430 PLB1Q6P1J6 1458 aa16.01■□□□□ 0.15
NEDD8-206ENST00000531430 UACAQ9BZF9 1416 aa15.99■□□□□ 0.15
NEDD8-206ENST00000531430 KCNH8Q96L42 1107 aa15.98■□□□□ 0.15
NEDD8-206ENST00000531430 IQGAP2Q13576 1575 aa15.96■□□□□ 0.14
NEDD8-206ENST00000531430 ADGRL1O94910 1474 aa15.94■□□□□ 0.14
NEDD8-206ENST00000531430 GLI2P10070 1586 aa15.92■□□□□ 0.14
NEDD8-206ENST00000531430 UHRF1BP1LA0JNW5 1464 aa15.91■□□□□ 0.14
NEDD8-206ENST00000531430 COL17A1Q9UMD9 1497 aaPredicted RBP15.91■□□□□ 0.14
NEDD8-206ENST00000531430 DISP1Q96F81 1524 aa15.91■□□□□ 0.14
NEDD8-206ENST00000531430 EPRSP07814 1512 aaKnown RBP15.9■□□□□ 0.14
NEDD8-206ENST00000531430 RAPGEF2Q9Y4G8 1499 aa15.89■□□□□ 0.13
NEDD8-206ENST00000531430 PPRC1Q5VV67 1664 aaKnown RBP15.89■□□□□ 0.13
NEDD8-206ENST00000531430 ARID3CA6NKF2 412 aa15.88■□□□□ 0.13
NEDD8-206ENST00000531430 TEX14Q8IWB6 1497 aa15.87■□□□□ 0.13
NEDD8-206ENST00000531430 KDM5BQ9UGL1 1544 aa15.86■□□□□ 0.13
NEDD8-206ENST00000531430 FAM9AQ8IZU1 332 aaPredicted RBP15.86■□□□□ 0.13
NEDD8-206ENST00000531430 ZCCHC11Q5TAX3 1644 aaKnown RBP15.84■□□□□ 0.13
NEDD8-206ENST00000531430 P3H3Q8IVL6 736 aa15.84■□□□□ 0.13
NEDD8-206ENST00000531430 CD109Q6YHK3 1445 aa15.82■□□□□ 0.12
NEDD8-206ENST00000531430 UGGT2Q9NYU1 1516 aa15.82■□□□□ 0.12
NEDD8-206ENST00000531430 MAP3K4Q9Y6R4 1608 aa15.81■□□□□ 0.12
NEDD8-206ENST00000531430 KIAA0556O60303 1618 aa15.79■□□□□ 0.12
NEDD8-206ENST00000531430 WDR7Q9Y4E6 1490 aa15.79■□□□□ 0.12
NEDD8-206ENST00000531430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
NEDD8-206ENST00000531430 HNRNPUL2Q1KMD3 747 aaKnown RBP15.78■□□□□ 0.12
NEDD8-206ENST00000531430 HECW2Q9P2P5 1572 aa15.77■□□□□ 0.11
NEDD8-206ENST00000531430 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
NEDD8-206ENST00000531430 GOLGA3Q08378 1498 aa15.74■□□□□ 0.11
NEDD8-206ENST00000531430 ARID4BQ4LE39 1312 aaPredicted RBP15.7■□□□□ 0.1
NEDD8-206ENST00000531430 MAGI3Q5TCQ9 1506 aa15.7■□□□□ 0.1
NEDD8-206ENST00000531430 RAPGEF3O95398 923 aa15.69■□□□□ 0.1
NEDD8-206ENST00000531430 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
NEDD8-206ENST00000531430 CFAP43Q8NDM7 1665 aa15.67■□□□□ 0.1
NEDD8-206ENST00000531430 CTTNBP2Q8WZ74 1663 aa15.67■□□□□ 0.1
NEDD8-206ENST00000531430 ABCA8O94911 1581 aa15.66■□□□□ 0.1
NEDD8-206ENST00000531430 KIF21BO75037 1637 aa15.64■□□□□ 0.09
NEDD8-206ENST00000531430 ATP10BO94823 1461 aa15.63■□□□□ 0.09
NEDD8-206ENST00000531430 FBXO41Q8TF61 875 aa15.62■□□□□ 0.09
NEDD8-206ENST00000531430 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
NEDD8-206ENST00000531430 PRXQ9BXM0 1461 aa15.59■□□□□ 0.09
NEDD8-206ENST00000531430 ARAP3Q8WWN8 1544 aa15.58■□□□□ 0.09
NEDD8-206ENST00000531430 PLEKHD1A6NEE1 506 aa15.57■□□□□ 0.08
NEDD8-206ENST00000531430 PHLDB1Q86UU1 1377 aa15.57■□□□□ 0.08
NEDD8-206ENST00000531430 PTPRMP28827 1452 aa15.56■□□□□ 0.08
NEDD8-206ENST00000531430 MLECQ14165 292 aa15.53■□□□□ 0.08
NEDD8-206ENST00000531430 EHMT2Q96KQ7 1210 aa15.52■□□□□ 0.08
NEDD8-206ENST00000531430 ATP1B4Q9UN42 357 aaPredicted RBP15.52■□□□□ 0.08
NEDD8-206ENST00000531430 HSPA2P54652 639 aa15.51■□□□□ 0.07
NEDD8-206ENST00000531430 ABCA9Q8IUA7 1624 aa15.5■□□□□ 0.07
NEDD8-206ENST00000531430 NEO1Q92859 1461 aa15.49■□□□□ 0.07
NEDD8-206ENST00000531430 RAPGEF6Q8TEU7 1601 aa15.48■□□□□ 0.07
NEDD8-206ENST00000531430 ADAMTSL3P82987 1691 aa15.48■□□□□ 0.07
NEDD8-206ENST00000531430 FHOD3Q2V2M9 1422 aa15.46■□□□□ 0.07
NEDD8-206ENST00000531430 DENND4BO75064 1496 aaPredicted RBP15.46■□□□□ 0.06
NEDD8-206ENST00000531430 AKNAQ7Z591 1439 aa15.45■□□□□ 0.06
NEDD8-206ENST00000531430 MADDQ8WXG6 1647 aa15.44■□□□□ 0.06
NEDD8-206ENST00000531430 MYT1LQ9UL68 1186 aa15.44■□□□□ 0.06
NEDD8-206ENST00000531430 NUP153P49790 1475 aaKnown RBP15.43■□□□□ 0.06
NEDD8-206ENST00000531430 BCORL1Q5H9F3 1711 aa15.43■□□□□ 0.06
NEDD8-206ENST00000531430 SAMD9Q5K651 1589 aa15.41■□□□□ 0.06
NEDD8-206ENST00000531430 POGZQ7Z3K3 1410 aa15.41■□□□□ 0.06
NEDD8-206ENST00000531430 PCF11O94913 1555 aaKnown RBP15.41■□□□□ 0.06
NEDD8-206ENST00000531430 FANCAO15360 1455 aa15.4■□□□□ 0.06
NEDD8-206ENST00000531430 RIMS1Q86UR5 1692 aaKnown RBP15.4■□□□□ 0.06
NEDD8-206ENST00000531430 UBTFP17480 764 aaKnown RBP15.39■□□□□ 0.05
NEDD8-206ENST00000531430 FRMPD1Q5SYB0 1578 aa15.39■□□□□ 0.05
NEDD8-206ENST00000531430 LMTK3Q96Q04 1460 aa15.39■□□□□ 0.05
NEDD8-206ENST00000531430 CERKQ8TCT0 537 aa15.38■□□□□ 0.05
NEDD8-206ENST00000531430 YEATS2Q9ULM3 1422 aa15.36■□□□□ 0.05
NEDD8-206ENST00000531430 CEBPAP49715 358 aaPredicted RBP15.36■□□□□ 0.05
NEDD8-206ENST00000531430 SCAPERQ9BY12 1400 aa15.35■□□□□ 0.05
NEDD8-206ENST00000531430 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.34■□□□□ 0.05
NEDD8-206ENST00000531430 EFCAB2Q5VUJ9 269 aa15.34■□□□□ 0.05
NEDD8-206ENST00000531430 ZFYVE16Q7Z3T8 1539 aa15.33■□□□□ 0.04
NEDD8-206ENST00000531430 ARHGEF40Q8TER5 1519 aa15.33■□□□□ 0.04
NEDD8-206ENST00000531430 RICTORQ6R327 1708 aa15.32■□□□□ 0.04
NEDD8-206ENST00000531430 CDK11AQ9UQ88 783 aaPredicted RBP15.32■□□□□ 0.04
NEDD8-206ENST00000531430 EEA1Q15075 1411 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms