RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 WRNQ14191 1432 aaPredicted RBP eCLIP16.26■□□□□ 0.19
VPS11-203ENST00000529545 CEP170Q5SW79 1584 aa16.23■□□□□ 0.19
VPS11-203ENST00000529545 ERCC6L2Q5T890 1561 aa16.23■□□□□ 0.19
VPS11-203ENST00000529545 ADAMTS12P58397 1594 aa16.22■□□□□ 0.19
VPS11-203ENST00000529545 NUP160Q12769 1436 aa16.22■□□□□ 0.19
VPS11-203ENST00000529545 FHAD1B1AJZ9 1412 aa16.19■□□□□ 0.18
VPS11-203ENST00000529545 SHROOM2Q13796 1616 aa16.17■□□□□ 0.18
VPS11-203ENST00000529545 SUPT5HO00267 1087 aaKnown RBP16.17■□□□□ 0.18
VPS11-203ENST00000529545 TOP2BQ02880 1626 aa16.15■□□□□ 0.18
VPS11-203ENST00000529545 BIVM-ERCC5R4GMW8 1640 aa16.15■□□□□ 0.18
VPS11-203ENST00000529545 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.17
VPS11-203ENST00000529545 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
VPS11-203ENST00000529545 KIF13AQ9H1H9 1805 aa16.11■□□□□ 0.17
VPS11-203ENST00000529545 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS11-203ENST00000529545 JPH4Q96JJ6 628 aa16.1■□□□□ 0.17
VPS11-203ENST00000529545 FAM69CQ0P6D2 419 aa16.05■□□□□ 0.16
VPS11-203ENST00000529545 ABCC10Q5T3U5 1492 aa16.01■□□□□ 0.15
VPS11-203ENST00000529545 RUSC2Q8N2Y8 1516 aa15.99■□□□□ 0.15
VPS11-203ENST00000529545 CNKSR2Q8WXI2 1034 aa15.99■□□□□ 0.15
VPS11-203ENST00000529545 MAPKBP1O60336 1514 aa15.99■□□□□ 0.15
VPS11-203ENST00000529545 DIP2BQ9P265 1576 aa15.95■□□□□ 0.14
VPS11-203ENST00000529545 ADCY10Q96PN6 1610 aa15.94■□□□□ 0.14
VPS11-203ENST00000529545 KDM6BO15054 1643 aa15.92■□□□□ 0.14
VPS11-203ENST00000529545 KIAA0586Q9BVV6 1533 aa15.92■□□□□ 0.14
VPS11-203ENST00000529545 TSPOAP1O95153 1857 aa15.88■□□□□ 0.13
VPS11-203ENST00000529545 CUL7Q14999 1698 aa15.87■□□□□ 0.13
VPS11-203ENST00000529545 KIF27Q86VH2 1401 aa15.86■□□□□ 0.13
VPS11-203ENST00000529545 IGF1RP08069 1367 aa15.86■□□□□ 0.13
VPS11-203ENST00000529545 NCBP3Q53F19 620 aaKnown RBP15.85■□□□□ 0.13
VPS11-203ENST00000529545 PTPRGP23470 1445 aa15.85■□□□□ 0.13
VPS11-203ENST00000529545 KDM4FA0A1W2PPD8 638 aa15.84■□□□□ 0.13
VPS11-203ENST00000529545 TTBK1Q5TCY1 1321 aaPredicted RBP15.83■□□□□ 0.12
VPS11-203ENST00000529545 CARMIL2Q6F5E8 1435 aa15.82■□□□□ 0.12
VPS11-203ENST00000529545 HOXD11P31277 338 aaPredicted RBP15.8■□□□□ 0.12
VPS11-203ENST00000529545 TNIKQ9UKE5 1360 aa15.78■□□□□ 0.12
VPS11-203ENST00000529545 RNF216Q9NWF9 866 aaPredicted RBP15.78■□□□□ 0.12
VPS11-203ENST00000529545 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
VPS11-203ENST00000529545 CARMIL1Q5VZK9 1371 aa15.77■□□□□ 0.12
VPS11-203ENST00000529545 PLB1Q6P1J6 1458 aa15.77■□□□□ 0.11
VPS11-203ENST00000529545 ASXL2Q76L83 1435 aa15.75■□□□□ 0.11
VPS11-203ENST00000529545 GLI2P10070 1586 aa15.73■□□□□ 0.11
VPS11-203ENST00000529545 IQGAP2Q13576 1575 aa15.73■□□□□ 0.11
VPS11-203ENST00000529545 UHRF1BP1LA0JNW5 1464 aa15.71■□□□□ 0.1
VPS11-203ENST00000529545 UACAQ9BZF9 1416 aa15.7■□□□□ 0.1
VPS11-203ENST00000529545 PPRC1Q5VV67 1664 aaKnown RBP15.68■□□□□ 0.1
VPS11-203ENST00000529545 ADGRL1O94910 1474 aa15.67■□□□□ 0.1
VPS11-203ENST00000529545 ILDR1Q86SU0 546 aaPredicted RBP15.67■□□□□ 0.1
VPS11-203ENST00000529545 TEX14Q8IWB6 1497 aa15.66■□□□□ 0.1
VPS11-203ENST00000529545 EPRSP07814 1512 aaKnown RBP15.63■□□□□ 0.09
VPS11-203ENST00000529545 DISP1Q96F81 1524 aa15.63■□□□□ 0.09
VPS11-203ENST00000529545 KDM5BQ9UGL1 1544 aa15.63■□□□□ 0.09
VPS11-203ENST00000529545 MAP3K4Q9Y6R4 1608 aa15.63■□□□□ 0.09
VPS11-203ENST00000529545 ZCCHC11Q5TAX3 1644 aaKnown RBP15.61■□□□□ 0.09
VPS11-203ENST00000529545 COL17A1Q9UMD9 1497 aaPredicted RBP15.6■□□□□ 0.09
VPS11-203ENST00000529545 UGGT2Q9NYU1 1516 aa15.6■□□□□ 0.09
VPS11-203ENST00000529545 RAPGEF2Q9Y4G8 1499 aa15.59■□□□□ 0.09
VPS11-203ENST00000529545 KIAA0556O60303 1618 aa15.57■□□□□ 0.08
VPS11-203ENST00000529545 DCAF8L1A6NGE4 600 aa15.56■□□□□ 0.08
VPS11-203ENST00000529545 WDR7Q9Y4E6 1490 aa15.55■□□□□ 0.08
VPS11-203ENST00000529545 HECW2Q9P2P5 1572 aa15.54■□□□□ 0.08
VPS11-203ENST00000529545 NPM3O75607 178 aaKnown RBP15.52■□□□□ 0.08
VPS11-203ENST00000529545 KCNH8Q96L42 1107 aa15.51■□□□□ 0.07
VPS11-203ENST00000529545 CD109Q6YHK3 1445 aa15.51■□□□□ 0.07
VPS11-203ENST00000529545 GOLGA3Q08378 1498 aa15.5■□□□□ 0.07
VPS11-203ENST00000529545 CFAP43Q8NDM7 1665 aa15.49■□□□□ 0.07
VPS11-203ENST00000529545 FAM9AQ8IZU1 332 aaPredicted RBP15.49■□□□□ 0.07
VPS11-203ENST00000529545 MAGI3Q5TCQ9 1506 aa15.48■□□□□ 0.07
VPS11-203ENST00000529545 CTTNBP2Q8WZ74 1663 aa15.48■□□□□ 0.07
VPS11-203ENST00000529545 KCNA4P22459 653 aa15.44■□□□□ 0.06
VPS11-203ENST00000529545 ABCA8O94911 1581 aa15.44■□□□□ 0.06
VPS11-203ENST00000529545 KIF21BO75037 1637 aa15.39■□□□□ 0.05
VPS11-203ENST00000529545 ARAP3Q8WWN8 1544 aa15.38■□□□□ 0.05
VPS11-203ENST00000529545 PHLDB1Q86UU1 1377 aa15.36■□□□□ 0.05
VPS11-203ENST00000529545 ARID3CA6NKF2 412 aa15.35■□□□□ 0.05
VPS11-203ENST00000529545 P3H3Q8IVL6 736 aa15.33■□□□□ 0.04
VPS11-203ENST00000529545 FBXO41Q8TF61 875 aa15.33■□□□□ 0.04
VPS11-203ENST00000529545 PRXQ9BXM0 1461 aa15.33■□□□□ 0.04
VPS11-203ENST00000529545 ATP10BO94823 1461 aa15.32■□□□□ 0.04
VPS11-203ENST00000529545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.3■□□□□ 0.04
VPS11-203ENST00000529545 HNRNPUL2Q1KMD3 747 aaKnown RBP15.3■□□□□ 0.04
VPS11-203ENST00000529545 ABCA9Q8IUA7 1624 aa15.3■□□□□ 0.04
VPS11-203ENST00000529545 PTPRMP28827 1452 aa15.29■□□□□ 0.04
VPS11-203ENST00000529545 ADAMTSL3P82987 1691 aa15.28■□□□□ 0.04
VPS11-203ENST00000529545 NEO1Q92859 1461 aa15.28■□□□□ 0.04
VPS11-203ENST00000529545 ARID4BQ4LE39 1312 aaPredicted RBP15.28■□□□□ 0.04
VPS11-203ENST00000529545 RAPGEF3O95398 923 aa15.28■□□□□ 0.04
VPS11-203ENST00000529545 RAPGEF6Q8TEU7 1601 aa15.25■□□□□ 0.03
VPS11-203ENST00000529545 BCORL1Q5H9F3 1711 aa15.23■□□□□ 0.03
VPS11-203ENST00000529545 SAMD9Q5K651 1589 aa15.21■□□□□ 0.03
VPS11-203ENST00000529545 MADDQ8WXG6 1647 aa15.21■□□□□ 0.02
VPS11-203ENST00000529545 PCF11O94913 1555 aaKnown RBP15.2■□□□□ 0.02
VPS11-203ENST00000529545 PLEKHD1A6NEE1 506 aa15.19■□□□□ 0.02
VPS11-203ENST00000529545 CSRNP3Q8WYN3 585 aa15.19■□□□□ 0.02
VPS11-203ENST00000529545 DENND4BO75064 1496 aaPredicted RBP15.18■□□□□ 0.02
VPS11-203ENST00000529545 FRMPD1Q5SYB0 1578 aa15.18■□□□□ 0.02
VPS11-203ENST00000529545 POGZQ7Z3K3 1410 aa15.17■□□□□ 0.02
VPS11-203ENST00000529545 NUP153P49790 1475 aaKnown RBP15.16■□□□□ 0.02
VPS11-203ENST00000529545 LMTK3Q96Q04 1460 aa15.16■□□□□ 0.02
VPS11-203ENST00000529545 RANGAP1P46060 587 aaPredicted RBP15.16■□□□□ 0.02
VPS11-203ENST00000529545 ARHGEF40Q8TER5 1519 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms