RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
ECHDC1-220ENST00000528402 ERCC6Q03468 1493 aa22.44■■□□□ 1.18
ECHDC1-220ENST00000528402 GRIN2BQ13224 1484 aa22.43■■□□□ 1.18
ECHDC1-220ENST00000528402 AQRO60306 1485 aaKnown RBP eCLIP22.39■■□□□ 1.17
ECHDC1-220ENST00000528402 ADAMTS12P58397 1594 aa22.35■■□□□ 1.17
ECHDC1-220ENST00000528402 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
ECHDC1-220ENST00000528402 FMN1Q68DA7 1419 aa22.34■■□□□ 1.17
ECHDC1-220ENST00000528402 TIAM1Q13009 1591 aa22.33■■□□□ 1.17
ECHDC1-220ENST00000528402 SAMD9Q5K651 1589 aa22.32■■□□□ 1.16
ECHDC1-220ENST00000528402 KANK4Q5T7N3 995 aaPredicted RBP22.31■■□□□ 1.16
ECHDC1-220ENST00000528402 CCER1Q8TC90 406 aaPredicted RBP22.31■■□□□ 1.16
ECHDC1-220ENST00000528402 FYCO1Q9BQS8 1478 aa22.31■■□□□ 1.16
ECHDC1-220ENST00000528402 CASKIN1Q8WXD9 1431 aa22.3■■□□□ 1.16
ECHDC1-220ENST00000528402 RRBP1Q9P2E9 1410 aaKnown RBP22.28■■□□□ 1.16
ECHDC1-220ENST00000528402 FHOD3Q2V2M9 1422 aa22.26■■□□□ 1.15
ECHDC1-220ENST00000528402 CFAP43Q8NDM7 1665 aa22.26■■□□□ 1.15
ECHDC1-220ENST00000528402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.25■■□□□ 1.15
ECHDC1-220ENST00000528402 ZNF608Q9ULD9 1512 aaPredicted RBP22.25■■□□□ 1.15
ECHDC1-220ENST00000528402 PCF11O94913 1555 aaKnown RBP22.24■■□□□ 1.15
ECHDC1-220ENST00000528402 LRRC9Q6ZRR7 1453 aa22.24■■□□□ 1.15
ECHDC1-220ENST00000528402 P3H3Q8IVL6 736 aa22.23■■□□□ 1.15
ECHDC1-220ENST00000528402 IQGAP2Q13576 1575 aa22.21■■□□□ 1.15
ECHDC1-220ENST00000528402 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
ECHDC1-220ENST00000528402 MAGI1Q96QZ7 1491 aaPredicted RBP22.2■■□□□ 1.15
ECHDC1-220ENST00000528402 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
ECHDC1-220ENST00000528402 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
ECHDC1-220ENST00000528402 CCNB3Q8WWL7 1395 aa22.17■■□□□ 1.14
ECHDC1-220ENST00000528402 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
ECHDC1-220ENST00000528402 KIAA0586Q9BVV6 1533 aa22.16■■□□□ 1.14
ECHDC1-220ENST00000528402 UGGT2Q9NYU1 1516 aa22.14■■□□□ 1.14
ECHDC1-220ENST00000528402 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
ECHDC1-220ENST00000528402 SYNJ2O15056 1496 aa22.1■■□□□ 1.13
ECHDC1-220ENST00000528402 ATP1B4Q9UN42 357 aaPredicted RBP22.09■■□□□ 1.13
ECHDC1-220ENST00000528402 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.06■■□□□ 1.12
ECHDC1-220ENST00000528402 CCDC18Q5T9S5 1454 aa22.06■■□□□ 1.12
ECHDC1-220ENST00000528402 CLSPNQ9HAW4 1339 aa22.05■■□□□ 1.12
ECHDC1-220ENST00000528402 CHMP7Q8WUX9 453 aaPredicted RBP22.04■■□□□ 1.12
ECHDC1-220ENST00000528402 HECW1Q76N89 1606 aa22.02■■□□□ 1.11
ECHDC1-220ENST00000528402 MTUS2Q5JR59 1369 aa21.99■■□□□ 1.11
ECHDC1-220ENST00000528402 PHLDB1Q86UU1 1377 aa21.99■■□□□ 1.11
ECHDC1-220ENST00000528402 EHBP1L1Q8N3D4 1523 aa21.97■■□□□ 1.11
ECHDC1-220ENST00000528402 KIAA0556O60303 1618 aa21.96■■□□□ 1.11
ECHDC1-220ENST00000528402 NUP160Q12769 1436 aa21.96■■□□□ 1.11
ECHDC1-220ENST00000528402 LRRIQ1Q96JM4 1722 aa21.96■■□□□ 1.11
ECHDC1-220ENST00000528402 SUPT6HQ7KZ85 1726 aaKnown RBP21.94■■□□□ 1.1
ECHDC1-220ENST00000528402 DISP1Q96F81 1524 aa21.94■■□□□ 1.1
ECHDC1-220ENST00000528402 CEP170Q5SW79 1584 aa21.92■■□□□ 1.1
ECHDC1-220ENST00000528402 EPRSP07814 1512 aaKnown RBP21.9■■□□□ 1.1
ECHDC1-220ENST00000528402 CARMIL2Q6F5E8 1435 aa21.9■■□□□ 1.1
ECHDC1-220ENST00000528402 FGD6Q6ZV73 1430 aa21.87■■□□□ 1.09
ECHDC1-220ENST00000528402 NCOA2Q15596 1464 aa21.86■■□□□ 1.09
ECHDC1-220ENST00000528402 ARHGEF11O15085 1522 aa21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 FBLN2P98095 1184 aa21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 FAM50AQ14320 339 aaKnown RBP21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 MYOM3Q5VTT5 1437 aa21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 SETD5Q9C0A6 1442 aa21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
ECHDC1-220ENST00000528402 JPH4Q96JJ6 628 aa21.84■■□□□ 1.09
ECHDC1-220ENST00000528402 RAPGEF6Q8TEU7 1601 aa21.83■■□□□ 1.08
ECHDC1-220ENST00000528402 CDK11AQ9UQ88 783 aaPredicted RBP21.81■■□□□ 1.08
ECHDC1-220ENST00000528402 ITGAEP38570 1179 aa21.8■■□□□ 1.08
ECHDC1-220ENST00000528402 RAB3GAP2Q9H2M9 1393 aa21.77■■□□□ 1.08
ECHDC1-220ENST00000528402 MIA2Q96PC5 1412 aa21.77■■□□□ 1.08
ECHDC1-220ENST00000528402 MAGI3Q5TCQ9 1506 aa21.76■■□□□ 1.07
ECHDC1-220ENST00000528402 NUP153P49790 1475 aaKnown RBP21.74■■□□□ 1.07
ECHDC1-220ENST00000528402 TCOF1Q13428 1488 aaKnown RBP21.73■■□□□ 1.07
ECHDC1-220ENST00000528402 PTPN23Q9H3S7 1636 aa21.72■■□□□ 1.07
ECHDC1-220ENST00000528402 CDK13Q14004 1512 aaKnown RBP21.72■■□□□ 1.07
ECHDC1-220ENST00000528402 ACIN1Q9UKV3 1341 aaKnown RBP21.68■■□□□ 1.06
ECHDC1-220ENST00000528402 CHD1O14646 1710 aa21.67■■□□□ 1.06
ECHDC1-220ENST00000528402 HFM1A2PYH4 1435 aa21.65■■□□□ 1.06
ECHDC1-220ENST00000528402 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.06
ECHDC1-220ENST00000528402 TROQ12816 1431 aaPredicted RBP21.64■■□□□ 1.05
ECHDC1-220ENST00000528402 ABCA8O94911 1581 aa21.64■■□□□ 1.05
ECHDC1-220ENST00000528402 PLB1Q6P1J6 1458 aa21.61■■□□□ 1.05
ECHDC1-220ENST00000528402 AKNAQ7Z591 1439 aa21.61■■□□□ 1.05
ECHDC1-220ENST00000528402 PRG4Q92954 1404 aaPredicted RBP21.61■■□□□ 1.05
ECHDC1-220ENST00000528402 SHROOM2Q13796 1616 aa21.6■■□□□ 1.05
ECHDC1-220ENST00000528402 ADCY10Q96PN6 1610 aa21.59■■□□□ 1.05
ECHDC1-220ENST00000528402 TIMELESSQ9UNS1 1208 aa21.59■■□□□ 1.05
ECHDC1-220ENST00000528402 PTPRGP23470 1445 aa21.57■■□□□ 1.04
ECHDC1-220ENST00000528402 PTPRKQ15262 1439 aa21.56■■□□□ 1.04
ECHDC1-220ENST00000528402 PLEKHD1A6NEE1 506 aa21.55■■□□□ 1.04
ECHDC1-220ENST00000528402 ITSN2Q9NZM3 1697 aa21.55■■□□□ 1.04
ECHDC1-220ENST00000528402 MAPKBP1O60336 1514 aa21.54■■□□□ 1.04
ECHDC1-220ENST00000528402 NAIPQ13075 1403 aa21.53■■□□□ 1.04
ECHDC1-220ENST00000528402 UACAQ9BZF9 1416 aa21.52■■□□□ 1.04
ECHDC1-220ENST00000528402 ARID3CA6NKF2 412 aa21.52■■□□□ 1.04
ECHDC1-220ENST00000528402 ATP10BO94823 1461 aa21.51■■□□□ 1.03
ECHDC1-220ENST00000528402 DIEXFQ68CQ4 756 aaKnown RBP21.5■■□□□ 1.03
ECHDC1-220ENST00000528402 ROCK1Q13464 1354 aa21.5■■□□□ 1.03
ECHDC1-220ENST00000528402 GCC2Q8IWJ2 1684 aa21.49■■□□□ 1.03
ECHDC1-220ENST00000528402 DNMT1P26358 1616 aaKnown RBP21.47■■□□□ 1.03
ECHDC1-220ENST00000528402 GPATCH8Q9UKJ3 1502 aaKnown RBP21.45■■□□□ 1.03
ECHDC1-220ENST00000528402 DAPK1P53355 1430 aa21.45■■□□□ 1.02
ECHDC1-220ENST00000528402 KIF14Q15058 1648 aa21.45■■□□□ 1.02
ECHDC1-220ENST00000528402 CFDP1Q9UEE9 299 aaPredicted RBP21.45■■□□□ 1.02
ECHDC1-220ENST00000528402 CLASP1Q7Z460 1538 aa21.44■■□□□ 1.02
ECHDC1-220ENST00000528402 ABCC5O15440 1437 aa21.41■■□□□ 1.02
ECHDC1-220ENST00000528402 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms