RNA–Protein interactions for RNA: ENST00000520857.5

TRAPPC9-208, Transcript of trafficking protein particle complex 9, humanhuman

TSL 1 (best)

Gene TRAPPC9, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-208ENST00000520857 CCER2I3L3R5 266 aa17.82■□□□□ 0.44
TRAPPC9-208ENST00000520857 PPP1R15AO75807 674 aaPredicted RBP17.8■□□□□ 0.44
TRAPPC9-208ENST00000520857 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.43
TRAPPC9-208ENST00000520857 FAM9BQ8IZU0 186 aa17.76■□□□□ 0.43
TRAPPC9-208ENST00000520857 WDR97A6NE52 1622 aa17.74■□□□□ 0.43
TRAPPC9-208ENST00000520857 MSH5O43196 834 aa17.73■□□□□ 0.43
TRAPPC9-208ENST00000520857 POLR3GLQ9BT43 218 aa17.73■□□□□ 0.43
TRAPPC9-208ENST00000520857 PRXQ9BXM0 1461 aa17.72■□□□□ 0.43
TRAPPC9-208ENST00000520857 NBR1Q14596 966 aa17.71■□□□□ 0.43
TRAPPC9-208ENST00000520857 UNC13AQ9UPW8 1703 aa17.7■□□□□ 0.42
TRAPPC9-208ENST00000520857 B4GALNT3Q6L9W6 998 aa17.68■□□□□ 0.42
TRAPPC9-208ENST00000520857 ARHGAP35Q9NRY4 1499 aa17.68■□□□□ 0.42
TRAPPC9-208ENST00000520857 TIMELESSQ9UNS1 1208 aa17.68■□□□□ 0.42
TRAPPC9-208ENST00000520857 PHLDB1Q86UU1 1377 aa17.67■□□□□ 0.42
TRAPPC9-208ENST00000520857 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
TRAPPC9-208ENST00000520857 MAPKBP1O60336 1514 aa17.64■□□□□ 0.42
TRAPPC9-208ENST00000520857 TOP2BQ02880 1626 aa17.64■□□□□ 0.41
TRAPPC9-208ENST00000520857 SENP3-EIF4A1A0A087X0R7 540 aa17.63■□□□□ 0.41
TRAPPC9-208ENST00000520857 MRS2Q9HD23 443 aa17.63■□□□□ 0.41
TRAPPC9-208ENST00000520857 CHIC2Q9UKJ5 165 aa17.63■□□□□ 0.41
TRAPPC9-208ENST00000520857 PPP4R2Q9NY27 417 aa17.62■□□□□ 0.41
TRAPPC9-208ENST00000520857 CUX2O14529 1486 aa17.62■□□□□ 0.41
TRAPPC9-208ENST00000520857 CARMIL1Q5VZK9 1371 aa17.59■□□□□ 0.41
TRAPPC9-208ENST00000520857 FANCIQ9NVI1 1328 aa17.59■□□□□ 0.41
TRAPPC9-208ENST00000520857 DEKP35659 375 aaKnown RBP17.58■□□□□ 0.41
TRAPPC9-208ENST00000520857 RRP7BPQ9NSQ0 103 aa17.58■□□□□ 0.41
TRAPPC9-208ENST00000520857 RTL5Q5HYW3 569 aaPredicted RBP17.58■□□□□ 0.4
TRAPPC9-208ENST00000520857 HSPA5P11021 654 aaKnown RBP17.56■□□□□ 0.4
TRAPPC9-208ENST00000520857 MTUS2Q5JR59 1369 aa17.56■□□□□ 0.4
TRAPPC9-208ENST00000520857 EIF4G2P78344 907 aaKnown RBP eCLIP17.56■□□□□ 0.46e-7■■■■■ 53.7
TRAPPC9-208ENST00000520857 BICRAQ9NZM4 1560 aa17.55■□□□□ 0.4
TRAPPC9-208ENST00000520857 LRRC9Q6ZRR7 1453 aa17.54■□□□□ 0.4
TRAPPC9-208ENST00000520857 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
TRAPPC9-208ENST00000520857 ARID3CA6NKF2 412 aa17.53■□□□□ 0.4
TRAPPC9-208ENST00000520857 IGF1RP08069 1367 aa17.51■□□□□ 0.39
TRAPPC9-208ENST00000520857 ANP32AP39687 249 aaKnown RBP17.51■□□□□ 0.39
TRAPPC9-208ENST00000520857 MYT1LQ9UL68 1186 aa17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 ZNF326Q5BKZ1 582 aaKnown RBP17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 CUX1P39880 1505 aa17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 FHOD3Q2V2M9 1422 aa17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 CCDC136Q96JN2 1154 aa17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 NOP58Q9Y2X3 529 aaKnown RBP17.5■□□□□ 0.39
TRAPPC9-208ENST00000520857 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
TRAPPC9-208ENST00000520857 CCDC184Q52MB2 194 aa17.49■□□□□ 0.39
TRAPPC9-208ENST00000520857 NPM2Q86SE8 214 aaKnown RBP17.49■□□□□ 0.39
TRAPPC9-208ENST00000520857 TIAM1Q13009 1591 aa17.48■□□□□ 0.39
TRAPPC9-208ENST00000520857 FOXD1Q16676 465 aa17.45■□□□□ 0.38
TRAPPC9-208ENST00000520857 WASHC2AQ641Q2 1341 aa17.45■□□□□ 0.38
TRAPPC9-208ENST00000520857 CCDC18Q5T9S5 1454 aa17.42■□□□□ 0.38
TRAPPC9-208ENST00000520857 ZBTB47Q9UFB7 747 aaPredicted RBP17.42■□□□□ 0.38
TRAPPC9-208ENST00000520857 ERICH6BQ5W0A0 696 aa17.42■□□□□ 0.38
TRAPPC9-208ENST00000520857 BIVM-ERCC5R4GMW8 1640 aa17.4■□□□□ 0.38
TRAPPC9-208ENST00000520857 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
TRAPPC9-208ENST00000520857 PAK3O75914 559 aaPredicted RBP17.38■□□□□ 0.37
TRAPPC9-208ENST00000520857 SALL2Q9Y467 1007 aaPredicted RBP17.38■□□□□ 0.37
TRAPPC9-208ENST00000520857 L3MBTL2Q969R5 705 aa17.36■□□□□ 0.37
TRAPPC9-208ENST00000520857 FGD6Q6ZV73 1430 aa17.34■□□□□ 0.37
TRAPPC9-208ENST00000520857 UACAQ9BZF9 1416 aa17.34■□□□□ 0.37
TRAPPC9-208ENST00000520857 RTN4Q9NQC3 1192 aaKnown RBP17.33■□□□□ 0.36
TRAPPC9-208ENST00000520857 ZBED9Q6R2W3 1325 aa17.31■□□□□ 0.36
TRAPPC9-208ENST00000520857 FMN1Q68DA7 1419 aa17.3■□□□□ 0.36
TRAPPC9-208ENST00000520857 TMC1Q8TDI8 760 aa17.3■□□□□ 0.36
TRAPPC9-208ENST00000520857 C11orf95C9JLR9 678 aaPredicted RBP17.29■□□□□ 0.36
TRAPPC9-208ENST00000520857 MPHOSPH9Q99550 1183 aa17.29■□□□□ 0.36
TRAPPC9-208ENST00000520857 LAS1LQ9Y4W2 734 aaKnown RBP17.28■□□□□ 0.36
TRAPPC9-208ENST00000520857 MAP3K1Q13233 1512 aa17.28■□□□□ 0.36
TRAPPC9-208ENST00000520857 PCF11O94913 1555 aaKnown RBP17.28■□□□□ 0.36
TRAPPC9-208ENST00000520857 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
TRAPPC9-208ENST00000520857 FGD5Q6ZNL6 1462 aa17.27■□□□□ 0.36
TRAPPC9-208ENST00000520857 IPO9Q96P70 1041 aaKnown RBP17.26■□□□□ 0.35
TRAPPC9-208ENST00000520857 CNTLNQ9NXG0 1405 aa17.26■□□□□ 0.35
TRAPPC9-208ENST00000520857 CFTRP13569 1480 aa17.26■□□□□ 0.35
TRAPPC9-208ENST00000520857 HFM1A2PYH4 1435 aa17.24■□□□□ 0.35
TRAPPC9-208ENST00000520857 CCDC7Q96M83 1385 aa17.24■□□□□ 0.35
TRAPPC9-208ENST00000520857 PTPRKQ15262 1439 aa17.23■□□□□ 0.35
TRAPPC9-208ENST00000520857 AKNAQ7Z591 1439 aa17.23■□□□□ 0.35
TRAPPC9-208ENST00000520857 NUDCQ9Y266 331 aa17.22■□□□□ 0.35
TRAPPC9-208ENST00000520857 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
TRAPPC9-208ENST00000520857 NAIPQ13075 1403 aa17.21■□□□□ 0.35
TRAPPC9-208ENST00000520857 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
TRAPPC9-208ENST00000520857 DAXXQ9UER7 740 aaPredicted RBP17.21■□□□□ 0.35
TRAPPC9-208ENST00000520857 AQRO60306 1485 aaKnown RBP eCLIP17.2■□□□□ 0.344e-6■■■■□ 26.3
TRAPPC9-208ENST00000520857 KIF7Q2M1P5 1343 aa17.2■□□□□ 0.34
TRAPPC9-208ENST00000520857 NEFMP07197 916 aa17.19■□□□□ 0.34
TRAPPC9-208ENST00000520857 FYCO1Q9BQS8 1478 aa17.19■□□□□ 0.34
TRAPPC9-208ENST00000520857 CADPSQ9ULU8 1353 aa17.19■□□□□ 0.34
TRAPPC9-208ENST00000520857 NBPF8Q3BBV2 869 aa17.18■□□□□ 0.34
TRAPPC9-208ENST00000520857 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.17■□□□□ 0.342e-6■■■■■ 42.3
TRAPPC9-208ENST00000520857 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
TRAPPC9-208ENST00000520857 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
TRAPPC9-208ENST00000520857 MYOM3Q5VTT5 1437 aa17.16■□□□□ 0.34
TRAPPC9-208ENST00000520857 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
TRAPPC9-208ENST00000520857 KDM2AQ9Y2K7 1162 aa17.15■□□□□ 0.34
TRAPPC9-208ENST00000520857 ANO8Q9HCE9 1232 aaPredicted RBP17.15■□□□□ 0.34
TRAPPC9-208ENST00000520857 TDRD9Q8NDG6 1382 aaKnown RBP17.12■□□□□ 0.33
TRAPPC9-208ENST00000520857 PTPN23Q9H3S7 1636 aa17.11■□□□□ 0.33
TRAPPC9-208ENST00000520857 IL27Q8NEV9 243 aa17.11■□□□□ 0.33
TRAPPC9-208ENST00000520857 EXOC6Q8TAG9 804 aa17.09■□□□□ 0.33
TRAPPC9-208ENST00000520857 HMGXB3Q12766 1538 aa17.08■□□□□ 0.33
TRAPPC9-208ENST00000520857 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms