RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CFAP43Q8NDM7 1665 aa22.08■■□□□ 1.12
NUP54-217ENST00000514987 AQRO60306 1485 aaKnown RBP eCLIP22.08■■□□□ 1.12
NUP54-217ENST00000514987 LRRC9Q6ZRR7 1453 aa22.06■■□□□ 1.12
NUP54-217ENST00000514987 KIF21AQ7Z4S6 1674 aa22.05■■□□□ 1.12
NUP54-217ENST00000514987 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
NUP54-217ENST00000514987 FYCO1Q9BQS8 1478 aa22.04■■□□□ 1.12
NUP54-217ENST00000514987 ZNF316A6NFI3 1004 aaPredicted RBP22.04■■□□□ 1.12
NUP54-217ENST00000514987 DIEXFQ68CQ4 756 aaKnown RBP22.04■■□□□ 1.12
NUP54-217ENST00000514987 PCF11O94913 1555 aaKnown RBP22.02■■□□□ 1.12
NUP54-217ENST00000514987 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
NUP54-217ENST00000514987 FMN1Q68DA7 1419 aa21.98■■□□□ 1.11
NUP54-217ENST00000514987 TARBP1Q13395 1621 aaKnown RBP21.98■■□□□ 1.11
NUP54-217ENST00000514987 DHX57Q6P158 1386 aaKnown RBP21.97■■□□□ 1.11
NUP54-217ENST00000514987 TDRD9Q8NDG6 1382 aaKnown RBP21.96■■□□□ 1.11
NUP54-217ENST00000514987 FHOD3Q2V2M9 1422 aa21.95■■□□□ 1.1
NUP54-217ENST00000514987 SAMD9Q5K651 1589 aa21.93■■□□□ 1.1
NUP54-217ENST00000514987 MRC2Q9UBG0 1479 aa21.9■■□□□ 1.1
NUP54-217ENST00000514987 P3H3Q8IVL6 736 aa21.88■■□□□ 1.09
NUP54-217ENST00000514987 DNAJC5BQ9UF47 199 aa21.88■■□□□ 1.09
NUP54-217ENST00000514987 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.87■■□□□ 1.09
NUP54-217ENST00000514987 THOC2Q8NI27 1593 aaKnown RBP21.87■■□□□ 1.09
NUP54-217ENST00000514987 PBRM1Q86U86 1689 aa21.86■■□□□ 1.09
NUP54-217ENST00000514987 PHLDB1Q86UU1 1377 aa21.85■■□□□ 1.09
NUP54-217ENST00000514987 SNAPC4Q5SXM2 1469 aa21.84■■□□□ 1.09
NUP54-217ENST00000514987 SETD5Q9C0A6 1442 aa21.8■■□□□ 1.08
NUP54-217ENST00000514987 ATP1B4Q9UN42 357 aaPredicted RBP21.8■■□□□ 1.08
NUP54-217ENST00000514987 ADAMTS12P58397 1594 aa21.78■■□□□ 1.08
NUP54-217ENST00000514987 GRIN2BQ13224 1484 aa21.77■■□□□ 1.08
NUP54-217ENST00000514987 RAB3GAP2Q9H2M9 1393 aa21.77■■□□□ 1.08
NUP54-217ENST00000514987 IFT140Q96RY7 1462 aa21.76■■□□□ 1.07
NUP54-217ENST00000514987 ITGAEP38570 1179 aa21.75■■□□□ 1.07
NUP54-217ENST00000514987 WDR62O43379 1518 aa21.75■■□□□ 1.07
NUP54-217ENST00000514987 IQGAP2Q13576 1575 aa21.72■■□□□ 1.07
NUP54-217ENST00000514987 CENPBP07199 599 aaPredicted RBP21.72■■□□□ 1.07
NUP54-217ENST00000514987 FAM50AQ14320 339 aaKnown RBP21.72■■□□□ 1.07
NUP54-217ENST00000514987 MTUS2Q5JR59 1369 aa21.72■■□□□ 1.07
NUP54-217ENST00000514987 CCDC18Q5T9S5 1454 aa21.71■■□□□ 1.07
NUP54-217ENST00000514987 EHBP1L1Q8N3D4 1523 aa21.69■■□□□ 1.06
NUP54-217ENST00000514987 FGD6Q6ZV73 1430 aa21.69■■□□□ 1.06
NUP54-217ENST00000514987 SUPT6HQ7KZ85 1726 aaKnown RBP21.67■■□□□ 1.06
NUP54-217ENST00000514987 LRRIQ1Q96JM4 1722 aa21.67■■□□□ 1.06
NUP54-217ENST00000514987 HECW1Q76N89 1606 aa21.66■■□□□ 1.06
NUP54-217ENST00000514987 ACIN1Q9UKV3 1341 aaKnown RBP21.65■■□□□ 1.06
NUP54-217ENST00000514987 MAPKBP1O60336 1514 aa21.64■■□□□ 1.05
NUP54-217ENST00000514987 UGGT2Q9NYU1 1516 aa21.64■■□□□ 1.05
NUP54-217ENST00000514987 NCOA2Q15596 1464 aa21.62■■□□□ 1.05
NUP54-217ENST00000514987 MYOM3Q5VTT5 1437 aa21.61■■□□□ 1.05
NUP54-217ENST00000514987 TIMELESSQ9UNS1 1208 aa21.6■■□□□ 1.05
NUP54-217ENST00000514987 ARHGEF11O15085 1522 aa21.58■■□□□ 1.04
NUP54-217ENST00000514987 KIAA0586Q9BVV6 1533 aa21.57■■□□□ 1.04
NUP54-217ENST00000514987 SCAF1Q9H7N4 1312 aaKnown RBP21.57■■□□□ 1.04
NUP54-217ENST00000514987 ZNF608Q9ULD9 1512 aaPredicted RBP21.56■■□□□ 1.04
NUP54-217ENST00000514987 HFM1A2PYH4 1435 aa21.53■■□□□ 1.04
NUP54-217ENST00000514987 ERCC6Q03468 1493 aa21.52■■□□□ 1.04
NUP54-217ENST00000514987 EPRSP07814 1512 aaKnown RBP21.52■■□□□ 1.04
NUP54-217ENST00000514987 EIF4G3O43432 1585 aaKnown RBP21.52■■□□□ 1.04
NUP54-217ENST00000514987 MIER1Q8N108 512 aa21.52■■□□□ 1.04
NUP54-217ENST00000514987 PTPN23Q9H3S7 1636 aa21.51■■□□□ 1.03
NUP54-217ENST00000514987 MAGI1Q96QZ7 1491 aaPredicted RBP21.5■■□□□ 1.03
NUP54-217ENST00000514987 NEUROD1Q13562 356 aa21.5■■□□□ 1.03
NUP54-217ENST00000514987 GRIN2AQ12879 1464 aa21.5■■□□□ 1.03
NUP54-217ENST00000514987 TCOF1Q13428 1488 aaKnown RBP21.5■■□□□ 1.03
NUP54-217ENST00000514987 MAGI3Q5TCQ9 1506 aa21.48■■□□□ 1.03
NUP54-217ENST00000514987 KIAA0556O60303 1618 aa21.47■■□□□ 1.03
NUP54-217ENST00000514987 MIA2Q96PC5 1412 aa21.46■■□□□ 1.03
NUP54-217ENST00000514987 UACAQ9BZF9 1416 aa21.45■■□□□ 1.02
NUP54-217ENST00000514987 DISP1Q96F81 1524 aa21.43■■□□□ 1.02
NUP54-217ENST00000514987 AKNAQ7Z591 1439 aa21.43■■□□□ 1.02
NUP54-217ENST00000514987 PTPRKQ15262 1439 aa21.42■■□□□ 1.02
NUP54-217ENST00000514987 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
NUP54-217ENST00000514987 NAIPQ13075 1403 aa21.41■■□□□ 1.02
NUP54-217ENST00000514987 CDK13Q14004 1512 aaKnown RBP21.38■■□□□ 1.01
NUP54-217ENST00000514987 RAPGEF6Q8TEU7 1601 aa21.38■■□□□ 1.01
NUP54-217ENST00000514987 GCC2Q8IWJ2 1684 aa21.38■■□□□ 1.01
NUP54-217ENST00000514987 CDK11AQ9UQ88 783 aaPredicted RBP21.35■■□□□ 1.01
NUP54-217ENST00000514987 SIN3AQ96ST3 1273 aa21.34■■□□□ 1.01
NUP54-217ENST00000514987 CHMP7Q8WUX9 453 aaPredicted RBP21.32■■□□□ 1
NUP54-217ENST00000514987 NUP153P49790 1475 aaKnown RBP21.31■■□□□ 1
NUP54-217ENST00000514987 CEP170Q5SW79 1584 aa21.3■■□□□ 1
NUP54-217ENST00000514987 CARMIL2Q6F5E8 1435 aa21.3■■□□□ 1
NUP54-217ENST00000514987 PPP1R15AO75807 674 aaPredicted RBP21.3■■□□□ 1
NUP54-217ENST00000514987 NUP160Q12769 1436 aa21.29■■□□□ 1
NUP54-217ENST00000514987 GTF3C3Q9Y5Q9 886 aa21.27■■□□□ 1
NUP54-217ENST00000514987 TONSLQ96HA7 1378 aa21.27■■□□□ 1
NUP54-217ENST00000514987 YTHDC1Q96MU7 727 aaKnown RBP21.27■□□□□ 0.99
NUP54-217ENST00000514987 ROCK1Q13464 1354 aa21.26■□□□□ 0.99
NUP54-217ENST00000514987 TROQ12816 1431 aaPredicted RBP21.22■□□□□ 0.99
NUP54-217ENST00000514987 DNMT1P26358 1616 aaKnown RBP21.22■□□□□ 0.99
NUP54-217ENST00000514987 ITSN2Q9NZM3 1697 aa21.21■□□□□ 0.99
NUP54-217ENST00000514987 ADCY10Q96PN6 1610 aa21.21■□□□□ 0.99
NUP54-217ENST00000514987 DAPK1P53355 1430 aa21.19■□□□□ 0.98
NUP54-217ENST00000514987 JPH4Q96JJ6 628 aa21.19■□□□□ 0.98
NUP54-217ENST00000514987 RRP7BPQ9NSQ0 103 aa21.19■□□□□ 0.98
NUP54-217ENST00000514987 FBLN2P98095 1184 aa21.15■□□□□ 0.98
NUP54-217ENST00000514987 CHIC2Q9UKJ5 165 aa21.15■□□□□ 0.98
NUP54-217ENST00000514987 ARID3CA6NKF2 412 aa21.14■□□□□ 0.98
NUP54-217ENST00000514987 ABCC5O15440 1437 aa21.14■□□□□ 0.98
NUP54-217ENST00000514987 PLB1Q6P1J6 1458 aa21.13■□□□□ 0.97
NUP54-217ENST00000514987 PELP1Q8IZL8 1130 aaKnown RBP21.13■□□□□ 0.97
NUP54-217ENST00000514987 ABCA8O94911 1581 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms