RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 EFCAB5A4FU69 1503 aa13.07□□□□□ -0.32
RNF4-220ENST00000513578 FHAD1B1AJZ9 1412 aa13.05□□□□□ -0.32
RNF4-220ENST00000513578 EIF4G3O43432 1585 aaKnown RBP13.03□□□□□ -0.32
RNF4-220ENST00000513578 AQRO60306 1485 aaKnown RBP eCLIP13.03□□□□□ -0.326e-8■■■■■ 32.6
RNF4-220ENST00000513578 ZNF608Q9ULD9 1512 aaPredicted RBP13.01□□□□□ -0.33
RNF4-220ENST00000513578 MAP3K1Q13233 1512 aa13□□□□□ -0.33
RNF4-220ENST00000513578 SAMD9Q5K651 1589 aa12.99□□□□□ -0.33
RNF4-220ENST00000513578 MAGI1Q96QZ7 1491 aaPredicted RBP12.98□□□□□ -0.33
RNF4-220ENST00000513578 FOXD1Q16676 465 aa12.98□□□□□ -0.33
RNF4-220ENST00000513578 ILDR1Q86SU0 546 aaPredicted RBP12.95□□□□□ -0.34
RNF4-220ENST00000513578 APLP2Q06481 763 aa12.94□□□□□ -0.34
RNF4-220ENST00000513578 SNAPC4Q5SXM2 1469 aa12.93□□□□□ -0.34
RNF4-220ENST00000513578 IQGAP2Q13576 1575 aa12.93□□□□□ -0.34
RNF4-220ENST00000513578 GRIN2AQ12879 1464 aa12.91□□□□□ -0.34
RNF4-220ENST00000513578 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
RNF4-220ENST00000513578 CFAP43Q8NDM7 1665 aa12.91□□□□□ -0.34
RNF4-220ENST00000513578 UGGT2Q9NYU1 1516 aa12.91□□□□□ -0.34
RNF4-220ENST00000513578 SYNJ2O15056 1496 aa12.91□□□□□ -0.34
RNF4-220ENST00000513578 FMN1Q68DA7 1419 aa12.9□□□□□ -0.34
RNF4-220ENST00000513578 KIAA0586Q9BVV6 1533 aa12.9□□□□□ -0.34
RNF4-220ENST00000513578 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
RNF4-220ENST00000513578 FYCO1Q9BQS8 1478 aa12.9□□□□□ -0.34
RNF4-220ENST00000513578 TIAM1Q13009 1591 aa12.9□□□□□ -0.35
RNF4-220ENST00000513578 CASKIN1Q8WXD9 1431 aa12.89□□□□□ -0.35
RNF4-220ENST00000513578 HRCP23327 699 aa12.89□□□□□ -0.35
RNF4-220ENST00000513578 PCF11O94913 1555 aaKnown RBP12.89□□□□□ -0.35
RNF4-220ENST00000513578 FHOD3Q2V2M9 1422 aa12.87□□□□□ -0.35
RNF4-220ENST00000513578 NUP160Q12769 1436 aa12.84□□□□□ -0.35
RNF4-220ENST00000513578 CEP170Q5SW79 1584 aa12.83□□□□□ -0.36
RNF4-220ENST00000513578 LRRC9Q6ZRR7 1453 aa12.82□□□□□ -0.36
RNF4-220ENST00000513578 KIAA0556O60303 1618 aa12.8□□□□□ -0.36
RNF4-220ENST00000513578 LRRIQ1Q96JM4 1722 aa12.8□□□□□ -0.36
RNF4-220ENST00000513578 KANK4Q5T7N3 995 aaPredicted RBP12.8□□□□□ -0.36
RNF4-220ENST00000513578 RRBP1Q9P2E9 1410 aaKnown RBP12.79□□□□□ -0.36
RNF4-220ENST00000513578 DISP1Q96F81 1524 aa12.78□□□□□ -0.36
RNF4-220ENST00000513578 P3H3Q8IVL6 736 aa12.78□□□□□ -0.36
RNF4-220ENST00000513578 CHMP7Q8WUX9 453 aaPredicted RBP12.78□□□□□ -0.36
RNF4-220ENST00000513578 HECW1Q76N89 1606 aa12.77□□□□□ -0.36
RNF4-220ENST00000513578 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.37
RNF4-220ENST00000513578 ZEB1P37275 1124 aaPredicted RBP12.76□□□□□ -0.37
RNF4-220ENST00000513578 CHD1O14646 1710 aa12.76□□□□□ -0.37
RNF4-220ENST00000513578 TTBK1Q5TCY1 1321 aaPredicted RBP12.73□□□□□ -0.37
RNF4-220ENST00000513578 EHBP1L1Q8N3D4 1523 aa12.72□□□□□ -0.37
RNF4-220ENST00000513578 CARMIL2Q6F5E8 1435 aa12.71□□□□□ -0.38
RNF4-220ENST00000513578 SHROOM2Q13796 1616 aa12.7□□□□□ -0.38
RNF4-220ENST00000513578 RAPGEF6Q8TEU7 1601 aa12.7□□□□□ -0.38
RNF4-220ENST00000513578 SUPT6HQ7KZ85 1726 aaKnown RBP12.7□□□□□ -0.38
RNF4-220ENST00000513578 CCNB3Q8WWL7 1395 aa12.69□□□□□ -0.38
RNF4-220ENST00000513578 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.69□□□□□ -0.38
RNF4-220ENST00000513578 EPRSP07814 1512 aaKnown RBP12.68□□□□□ -0.38
RNF4-220ENST00000513578 ARHGEF11O15085 1522 aa12.67□□□□□ -0.38
RNF4-220ENST00000513578 OSCARQ8IYS5 282 aa12.67□□□□□ -0.38
RNF4-220ENST00000513578 JPH4Q96JJ6 628 aa12.67□□□□□ -0.38
RNF4-220ENST00000513578 PHLDB1Q86UU1 1377 aa12.66□□□□□ -0.38
RNF4-220ENST00000513578 FBLN2P98095 1184 aa12.65□□□□□ -0.38
RNF4-220ENST00000513578 MTUS2Q5JR59 1369 aa12.64□□□□□ -0.39
RNF4-220ENST00000513578 MAGI3Q5TCQ9 1506 aa12.63□□□□□ -0.39
RNF4-220ENST00000513578 ATP1B4Q9UN42 357 aaPredicted RBP12.63□□□□□ -0.39
RNF4-220ENST00000513578 NUP153P49790 1475 aaKnown RBP12.63□□□□□ -0.39
RNF4-220ENST00000513578 ABCA8O94911 1581 aa12.63□□□□□ -0.39
RNF4-220ENST00000513578 CLASP1Q7Z460 1538 aa12.62□□□□□ -0.39
RNF4-220ENST00000513578 NCOA2Q15596 1464 aa12.62□□□□□ -0.39
RNF4-220ENST00000513578 FGD6Q6ZV73 1430 aa12.6□□□□□ -0.39
RNF4-220ENST00000513578 ADCY10Q96PN6 1610 aa12.59□□□□□ -0.39
RNF4-220ENST00000513578 CDK13Q14004 1512 aaKnown RBP12.59□□□□□ -0.39
RNF4-220ENST00000513578 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
RNF4-220ENST00000513578 MYOM3Q5VTT5 1437 aa12.59□□□□□ -0.39
RNF4-220ENST00000513578 PRG4Q92954 1404 aaPredicted RBP12.59□□□□□ -0.39
RNF4-220ENST00000513578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.57□□□□□ -0.4
RNF4-220ENST00000513578 TRHP20396 242 aaPredicted RBP12.57□□□□□ -0.4
RNF4-220ENST00000513578 CCER1Q8TC90 406 aaPredicted RBP12.57□□□□□ -0.4
RNF4-220ENST00000513578 TCOF1Q13428 1488 aaKnown RBP12.57□□□□□ -0.4
RNF4-220ENST00000513578 MIA2Q96PC5 1412 aa12.56□□□□□ -0.4
RNF4-220ENST00000513578 PLB1Q6P1J6 1458 aa12.56□□□□□ -0.4
RNF4-220ENST00000513578 CDK11AQ9UQ88 783 aaPredicted RBP12.55□□□□□ -0.4
RNF4-220ENST00000513578 PTPN23Q9H3S7 1636 aa12.55□□□□□ -0.4
RNF4-220ENST00000513578 CLSPNQ9HAW4 1339 aa12.54□□□□□ -0.4
RNF4-220ENST00000513578 PTPRGP23470 1445 aa12.54□□□□□ -0.4
RNF4-220ENST00000513578 TROQ12816 1431 aaPredicted RBP12.54□□□□□ -0.4
RNF4-220ENST00000513578 ITSN2Q9NZM3 1697 aa12.52□□□□□ -0.4
RNF4-220ENST00000513578 ATP10BO94823 1461 aa12.5□□□□□ -0.41
RNF4-220ENST00000513578 UACAQ9BZF9 1416 aa12.49□□□□□ -0.41
RNF4-220ENST00000513578 SETD5Q9C0A6 1442 aa12.49□□□□□ -0.41
RNF4-220ENST00000513578 UHRF1BP1LA0JNW5 1464 aa12.48□□□□□ -0.41
RNF4-220ENST00000513578 FAM50AQ14320 339 aaKnown RBP12.48□□□□□ -0.41
RNF4-220ENST00000513578 ERCC6L2Q5T890 1561 aa12.47□□□□□ -0.41
RNF4-220ENST00000513578 ABCC2Q92887 1545 aa12.47□□□□□ -0.41
RNF4-220ENST00000513578 DHX57Q6P158 1386 aaKnown RBP12.47□□□□□ -0.41
RNF4-220ENST00000513578 AKNAQ7Z591 1439 aa12.46□□□□□ -0.41
RNF4-220ENST00000513578 KIF14Q15058 1648 aa12.46□□□□□ -0.41
RNF4-220ENST00000513578 CDC42BPAQ5VT25 1732 aa12.45□□□□□ -0.42
RNF4-220ENST00000513578 GCC2Q8IWJ2 1684 aa12.45□□□□□ -0.42
RNF4-220ENST00000513578 RAB3GAP2Q9H2M9 1393 aa12.44□□□□□ -0.42
RNF4-220ENST00000513578 ABCC10Q5T3U5 1492 aa12.44□□□□□ -0.42
RNF4-220ENST00000513578 HFM1A2PYH4 1435 aa12.44□□□□□ -0.42
RNF4-220ENST00000513578 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
RNF4-220ENST00000513578 GPATCH8Q9UKJ3 1502 aaKnown RBP12.43□□□□□ -0.42
RNF4-220ENST00000513578 PLEKHD1A6NEE1 506 aa12.43□□□□□ -0.42
RNF4-220ENST00000513578 CYB5RLQ6IPT4 315 aa12.43□□□□□ -0.42
RNF4-220ENST00000513578 PTPRKQ15262 1439 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms