RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DEKP35659 375 aaKnown RBP14.63□□□□□ -0.07
LIMCH1-217ENST00000512946 CHMP4BQ9H444 224 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-217ENST00000512946 CFAP44Q96MT7 982 aa14.61□□□□□ -0.07
LIMCH1-217ENST00000512946 PNNQ9H307 717 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-217ENST00000512946 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
LIMCH1-217ENST00000512946 RSPH6AQ9H0K4 717 aa14.55□□□□□ -0.08
LIMCH1-217ENST00000512946 MS4A1P11836 297 aa14.53□□□□□ -0.08
LIMCH1-217ENST00000512946 KIAA2012Q0VF49 1180 aa14.53□□□□□ -0.08
LIMCH1-217ENST00000512946 MIER1Q8N108 512 aa14.53□□□□□ -0.08
LIMCH1-217ENST00000512946 CALRP27797 417 aaKnown RBP14.49□□□□□ -0.09
LIMCH1-217ENST00000512946 LAS1LQ9Y4W2 734 aaKnown RBP14.48□□□□□ -0.09
LIMCH1-217ENST00000512946 HSP90AB1P08238 724 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-217ENST00000512946 CSRNP3Q8WYN3 585 aa14.47□□□□□ -0.09
LIMCH1-217ENST00000512946 EIF4G2P78344 907 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIMCH1-217ENST00000512946 HSCBQ8IWL3 235 aa14.46□□□□□ -0.1
LIMCH1-217ENST00000512946 HSP90AA2PQ14568 343 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-217ENST00000512946 PLCB2Q00722 1185 aa14.45□□□□□ -0.1
LIMCH1-217ENST00000512946 SETQ01105 290 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-217ENST00000512946 GOLGA6L1Q8N7Z2 621 aa14.45□□□□□ -0.1
LIMCH1-217ENST00000512946 GOLGA6L4A6NEF3 574 aa14.44□□□□□ -0.1
LIMCH1-217ENST00000512946 GBP4Q96PP9 640 aa14.44□□□□□ -0.1
LIMCH1-217ENST00000512946 SALL2Q9Y467 1007 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-217ENST00000512946 IRX6P78412 446 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-217ENST00000512946 SYAP1Q96A49 352 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-217ENST00000512946 SUPT16HQ9Y5B9 1047 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-217ENST00000512946 GOLGA6L3A6NEY3 463 aa14.39□□□□□ -0.11
LIMCH1-217ENST00000512946 CDCA8Q53HL2 280 aa14.39□□□□□ -0.11
LIMCH1-217ENST00000512946 CFAP53Q96M91 514 aa14.38□□□□□ -0.11
LIMCH1-217ENST00000512946 HTATSF1O43719 755 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 A0A0U1RQG5 324 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 DRC7Q8IY82 874 aa14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 FTSJ3Q8IY81 847 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 MCCP23508 829 aa14.36□□□□□ -0.11
LIMCH1-217ENST00000512946 TCERG1O14776 1098 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-217ENST00000512946 VSIG10Q8N0Z9 540 aa14.31□□□□□ -0.12
LIMCH1-217ENST00000512946 TPM4P67936 248 aa14.3□□□□□ -0.12
LIMCH1-217ENST00000512946 GPS2Q13227 327 aa14.28□□□□□ -0.12
LIMCH1-217ENST00000512946 NOC3LQ8WTT2 800 aaKnown RBP14.28□□□□□ -0.12
LIMCH1-217ENST00000512946 CCDC34Q96HJ3 373 aa14.27□□□□□ -0.12
LIMCH1-217ENST00000512946 CCER2I3L3R5 266 aa14.27□□□□□ -0.13
LIMCH1-217ENST00000512946 CSPP1Q1MSJ5 1256 aa14.27□□□□□ -0.13
LIMCH1-217ENST00000512946 FGD1P98174 961 aa14.26□□□□□ -0.13
LIMCH1-217ENST00000512946 MTERF4Q7Z6M4 381 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-217ENST00000512946 HAP1P54257 671 aaPredicted RBP14.26□□□□□ -0.13
LIMCH1-217ENST00000512946 ESF1Q9H501 851 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-217ENST00000512946 RGS3P49796 1198 aa14.25□□□□□ -0.13
LIMCH1-217ENST00000512946 MAP7D2Q96T17 732 aa14.25□□□□□ -0.13
LIMCH1-217ENST00000512946 PHF14O94880 888 aa14.24□□□□□ -0.13
LIMCH1-217ENST00000512946 STAG3Q9UJ98 1225 aa14.24□□□□□ -0.13
LIMCH1-217ENST00000512946 IPO9Q96P70 1041 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-217ENST00000512946 NUDCQ9Y266 331 aa14.22□□□□□ -0.13
LIMCH1-217ENST00000512946 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.21□□□□□ -0.13
LIMCH1-217ENST00000512946 ZNF777Q9ULD5 760 aaPredicted RBP14.21□□□□□ -0.13
LIMCH1-217ENST00000512946 TIMELESSQ9UNS1 1208 aa14.21□□□□□ -0.13
LIMCH1-217ENST00000512946 KCNJ4P48050 445 aa14.2□□□□□ -0.14
LIMCH1-217ENST00000512946 NOM1Q5C9Z4 860 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-217ENST00000512946 TEX35Q5T0J7 233 aa14.2□□□□□ -0.14
LIMCH1-217ENST00000512946 KNSTRNQ9Y448 316 aa14.19□□□□□ -0.14
LIMCH1-217ENST00000512946 CHGAP10645 457 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-217ENST00000512946 CALD1Q05682 793 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-217ENST00000512946 DDX11L8A8MPP1 907 aa14.18□□□□□ -0.14
LIMCH1-217ENST00000512946 SKOR2Q2VWA4 1001 aaPredicted RBP14.17□□□□□ -0.14
LIMCH1-217ENST00000512946 MAPK8IP3Q9UPT6 1336 aa14.17□□□□□ -0.14
LIMCH1-217ENST00000512946 TSPY4P0CV99 314 aa14.17□□□□□ -0.14
LIMCH1-217ENST00000512946 TSPY10P0CW01 314 aa14.17□□□□□ -0.14
LIMCH1-217ENST00000512946 B4GALNT3Q6L9W6 998 aa14.15□□□□□ -0.14
LIMCH1-217ENST00000512946 TPM3P06753 285 aa14.14□□□□□ -0.15
LIMCH1-217ENST00000512946 ZNF771Q7L3S4 317 aaPredicted RBP14.14□□□□□ -0.15
LIMCH1-217ENST00000512946 APPP05067 770 aa14.12□□□□□ -0.15
LIMCH1-217ENST00000512946 CCDC70Q6NSX1 233 aa14.12□□□□□ -0.15
LIMCH1-217ENST00000512946 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-217ENST00000512946 TPRNQ4KMQ1 711 aa14.11□□□□□ -0.15
LIMCH1-217ENST00000512946 CCDC66A2RUB6 948 aa14.1□□□□□ -0.15
LIMCH1-217ENST00000512946 GSE1Q14687 1217 aa14.1□□□□□ -0.15
LIMCH1-217ENST00000512946 ABCC9O60706 1549 aa14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 CHMP4CQ96CF2 233 aa14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 RWDD1Q9H446 243 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 TSHZ2Q9NRE2 1034 aa14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 IPO8O15397 1037 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 KIAA1211Q6ZU35 1233 aa14.09□□□□□ -0.15
LIMCH1-217ENST00000512946 OS9Q13438 667 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 CHMP4AQ9BY43 222 aa14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 P3H3Q8IVL6 736 aa14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 FRAT1Q92837 279 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 ACBD3Q9H3P7 528 aa14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 CWC15Q9P013 229 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-217ENST00000512946 KIF3AQ9Y496 699 aa14.06□□□□□ -0.16
LIMCH1-217ENST00000512946 CDR1P51861 262 aa14.06□□□□□ -0.16
LIMCH1-217ENST00000512946 GNL2Q13823 731 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-217ENST00000512946 PMFBP1Q8TBY8 1022 aa14.06□□□□□ -0.16
LIMCH1-217ENST00000512946 KDM2AQ9Y2K7 1162 aa14.06□□□□□ -0.16
LIMCH1-217ENST00000512946 PKNOX2Q96KN3 472 aa14.05□□□□□ -0.16
LIMCH1-217ENST00000512946 HMMRO75330 724 aa14.04□□□□□ -0.16
LIMCH1-217ENST00000512946 ARID3AQ99856 593 aa14.04□□□□□ -0.16
LIMCH1-217ENST00000512946 GZF1Q9H116 711 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-217ENST00000512946 MTUS2Q5JR59 1369 aa14.04□□□□□ -0.16
LIMCH1-217ENST00000512946 RRP12Q5JTH9 1297 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms