RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 RUSC2Q8N2Y8 1516 aa36.79■■■■□ 3.48
SQSTM1-210ENST00000506042 KIF27Q86VH2 1401 aa36.77■■■■□ 3.48
SQSTM1-210ENST00000506042 CUL7Q14999 1698 aa36.74■■■■□ 3.47
SQSTM1-210ENST00000506042 KIAA0586Q9BVV6 1533 aa36.64■■■■□ 3.46
SQSTM1-210ENST00000506042 KIF13AQ9H1H9 1805 aa36.58■■■■□ 3.45
SQSTM1-210ENST00000506042 IGF1RP08069 1367 aa36.57■■■■□ 3.45
SQSTM1-210ENST00000506042 MAPKBP1O60336 1514 aa36.53■■■■□ 3.44
SQSTM1-210ENST00000506042 FAM69CQ0P6D2 419 aa36.47■■■■□ 3.43
SQSTM1-210ENST00000506042 ABCC10Q5T3U5 1492 aa36.47■■■■□ 3.43
SQSTM1-210ENST00000506042 CARMIL2Q6F5E8 1435 aa36.44■■■■□ 3.42
SQSTM1-210ENST00000506042 CARMIL1Q5VZK9 1371 aa36.44■■■■□ 3.42
SQSTM1-210ENST00000506042 ADCY10Q96PN6 1610 aa36.42■■■■□ 3.42
SQSTM1-210ENST00000506042 DIP2BQ9P265 1576 aa36.36■■■■□ 3.41
SQSTM1-210ENST00000506042 PTPRGP23470 1445 aa36.35■■■■□ 3.41
SQSTM1-210ENST00000506042 IQGAP2Q13576 1575 aa36.3■■■■□ 3.4
SQSTM1-210ENST00000506042 TNIKQ9UKE5 1360 aa36.28■■■■□ 3.4
SQSTM1-210ENST00000506042 TTBK1Q5TCY1 1321 aaPredicted RBP36.2■■■■□ 3.39
SQSTM1-210ENST00000506042 KDM6BO15054 1643 aa36.19■■■■□ 3.38
SQSTM1-210ENST00000506042 ABCC2Q92887 1545 aa36.16■■■■□ 3.38
SQSTM1-210ENST00000506042 RAPGEF2Q9Y4G8 1499 aa36.13■■■■□ 3.37
SQSTM1-210ENST00000506042 PLB1Q6P1J6 1458 aa36.11■■■■□ 3.37
SQSTM1-210ENST00000506042 TSPOAP1O95153 1857 aa36.11■■■■□ 3.37
SQSTM1-210ENST00000506042 UHRF1BP1LA0JNW5 1464 aa36.08■■■■□ 3.37
SQSTM1-210ENST00000506042 UACAQ9BZF9 1416 aa36.05■■■■□ 3.36
SQSTM1-210ENST00000506042 ASXL2Q76L83 1435 aa36.01■■■■□ 3.36
SQSTM1-210ENST00000506042 UGGT2Q9NYU1 1516 aa36■■■■□ 3.35
SQSTM1-210ENST00000506042 DISP1Q96F81 1524 aa35.98■■■■□ 3.35
SQSTM1-210ENST00000506042 GLI2P10070 1586 aa35.98■■■■□ 3.35
SQSTM1-210ENST00000506042 FAM9AQ8IZU1 332 aaPredicted RBP35.92■■■■□ 3.34
SQSTM1-210ENST00000506042 KIAA0556O60303 1618 aa35.91■■■■□ 3.34
SQSTM1-210ENST00000506042 GOLGA3Q08378 1498 aa35.89■■■■□ 3.34
SQSTM1-210ENST00000506042 KDM5BQ9UGL1 1544 aa35.88■■■■□ 3.33
SQSTM1-210ENST00000506042 CTTNBP2Q8WZ74 1663 aa35.88■■■■□ 3.33
SQSTM1-210ENST00000506042 TEX14Q8IWB6 1497 aa35.85■■■■□ 3.33
SQSTM1-210ENST00000506042 ZCCHC11Q5TAX3 1644 aaKnown RBP35.8■■■■□ 3.32
SQSTM1-210ENST00000506042 EPRSP07814 1512 aaKnown RBP35.78■■■■□ 3.32
SQSTM1-210ENST00000506042 MAP3K4Q9Y6R4 1608 aa35.74■■■■□ 3.31
SQSTM1-210ENST00000506042 PPRC1Q5VV67 1664 aaKnown RBP35.73■■■■□ 3.31
SQSTM1-210ENST00000506042 WDR7Q9Y4E6 1490 aa35.69■■■■□ 3.3
SQSTM1-210ENST00000506042 KDM4FA0A1W2PPD8 638 aa35.65■■■■□ 3.3
SQSTM1-210ENST00000506042 PRXQ9BXM0 1461 aa35.6■■■■□ 3.29
SQSTM1-210ENST00000506042 CFAP43Q8NDM7 1665 aa35.55■■■■□ 3.28
SQSTM1-210ENST00000506042 ABCA8O94911 1581 aa35.55■■■■□ 3.28
SQSTM1-210ENST00000506042 CD109Q6YHK3 1445 aa35.49■■■■□ 3.27
SQSTM1-210ENST00000506042 ADGRL1O94910 1474 aa35.48■■■■□ 3.27
SQSTM1-210ENST00000506042 KCNH8Q96L42 1107 aa35.47■■■■□ 3.27
SQSTM1-210ENST00000506042 MAGI3Q5TCQ9 1506 aa35.47■■■■□ 3.27
SQSTM1-210ENST00000506042 COL17A1Q9UMD9 1497 aaPredicted RBP35.41■■■■□ 3.26
SQSTM1-210ENST00000506042 CSRNP3Q8WYN3 585 aa35.38■■■■□ 3.25
SQSTM1-210ENST00000506042 EEA1Q15075 1411 aa35.37■■■■□ 3.25
SQSTM1-210ENST00000506042 P3H3Q8IVL6 736 aa35.29■■■■□ 3.24
SQSTM1-210ENST00000506042 PHLDB1Q86UU1 1377 aa35.28■■■■□ 3.24
SQSTM1-210ENST00000506042 SAMD9Q5K651 1589 aa35.25■■■■□ 3.23
SQSTM1-210ENST00000506042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.24■■■■□ 3.23
SQSTM1-210ENST00000506042 HNRNPUL2Q1KMD3 747 aaKnown RBP35.24■■■■□ 3.23
SQSTM1-210ENST00000506042 ATP10BO94823 1461 aa35.23■■■■□ 3.23
SQSTM1-210ENST00000506042 RAPGEF6Q8TEU7 1601 aa35.23■■■■□ 3.23
SQSTM1-210ENST00000506042 ARID3CA6NKF2 412 aa35.2■■■■□ 3.23
SQSTM1-210ENST00000506042 ARAP3Q8WWN8 1544 aa35.19■■■■□ 3.22
SQSTM1-210ENST00000506042 ABCA9Q8IUA7 1624 aa35.17■■■■□ 3.22
SQSTM1-210ENST00000506042 NEO1Q92859 1461 aa35.09■■■■□ 3.21
SQSTM1-210ENST00000506042 KIF21BO75037 1637 aa35.05■■■■□ 3.2
SQSTM1-210ENST00000506042 HECW2Q9P2P5 1572 aa35.04■■■■□ 3.2
SQSTM1-210ENST00000506042 EFCAB5A4FU69 1503 aa35.03■■■■□ 3.2
SQSTM1-210ENST00000506042 RANGAP1P46060 587 aaPredicted RBP35.03■■■■□ 3.2
SQSTM1-210ENST00000506042 PLEKHD1A6NEE1 506 aa35.02■■■■□ 3.2
SQSTM1-210ENST00000506042 NUP153P49790 1475 aaKnown RBP34.98■■■■□ 3.19
SQSTM1-210ENST00000506042 FHOD3Q2V2M9 1422 aa34.97■■■■□ 3.19
SQSTM1-210ENST00000506042 CFAP74Q9C0B2 1584 aa34.95■■■■□ 3.18
SQSTM1-210ENST00000506042 RAPGEF3O95398 923 aa34.87■■■■□ 3.17
SQSTM1-210ENST00000506042 ARID4BQ4LE39 1312 aaPredicted RBP34.85■■■■□ 3.17
SQSTM1-210ENST00000506042 DENND4BO75064 1496 aaPredicted RBP34.83■■■■□ 3.17
SQSTM1-210ENST00000506042 FANCAO15360 1455 aa34.79■■■■□ 3.16
SQSTM1-210ENST00000506042 ILDR1Q86SU0 546 aaPredicted RBP34.79■■■■□ 3.16
SQSTM1-210ENST00000506042 UBTFP17480 764 aaKnown RBP34.77■■■■□ 3.16
SQSTM1-210ENST00000506042 ADAMTSL3P82987 1691 aa34.76■■■■□ 3.16
SQSTM1-210ENST00000506042 AKNAQ7Z591 1439 aa34.76■■■■□ 3.16
SQSTM1-210ENST00000506042 FMN1Q68DA7 1419 aa34.75■■■■□ 3.15
SQSTM1-210ENST00000506042 PTPRMP28827 1452 aa34.74■■■■□ 3.15
SQSTM1-210ENST00000506042 CDK11AQ9UQ88 783 aaPredicted RBP34.74■■■■□ 3.15
SQSTM1-210ENST00000506042 FRMPD1Q5SYB0 1578 aa34.74■■■■□ 3.15
SQSTM1-210ENST00000506042 ARHGEF40Q8TER5 1519 aa34.73■■■■□ 3.15
SQSTM1-210ENST00000506042 POGZQ7Z3K3 1410 aa34.72■■■■□ 3.15
SQSTM1-210ENST00000506042 BCORL1Q5H9F3 1711 aa34.72■■■■□ 3.15
SQSTM1-210ENST00000506042 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.72■■■■□ 3.15
SQSTM1-210ENST00000506042 HECW1Q76N89 1606 aa34.7■■■■□ 3.14
SQSTM1-210ENST00000506042 RICTORQ6R327 1708 aa34.69■■■■□ 3.14
SQSTM1-210ENST00000506042 ATP1B4Q9UN42 357 aaPredicted RBP34.67■■■■□ 3.14
SQSTM1-210ENST00000506042 TTC37Q6PGP7 1564 aa34.65■■■■□ 3.14
SQSTM1-210ENST00000506042 MAGI2Q86UL8 1455 aa34.65■■■■□ 3.14
SQSTM1-210ENST00000506042 ZMYM4Q5VZL5 1548 aa34.63■■■■□ 3.13
SQSTM1-210ENST00000506042 CDK13Q14004 1512 aaKnown RBP34.61■■■■□ 3.13
SQSTM1-210ENST00000506042 MADDQ8WXG6 1647 aa34.61■■■■□ 3.13
SQSTM1-210ENST00000506042 ZFYVE16Q7Z3T8 1539 aa34.6■■■■□ 3.13
SQSTM1-210ENST00000506042 PLCH2O75038 1416 aa34.56■■■■□ 3.12
SQSTM1-210ENST00000506042 CLIP1P30622 1438 aa34.55■■■■□ 3.12
SQSTM1-210ENST00000506042 MYO5CQ9NQX4 1742 aa34.55■■■■□ 3.12
SQSTM1-210ENST00000506042 EFCAB2Q5VUJ9 269 aa34.54■■■■□ 3.12
SQSTM1-210ENST00000506042 EHMT2Q96KQ7 1210 aa34.53■■■■□ 3.12
SQSTM1-210ENST00000506042 RIMS1Q86UR5 1692 aaKnown RBP34.52■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms