RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 MAPKBP1O60336 1514 aa23.58■■□□□ 1.36
LSM6-204ENST00000504181 PRG4Q92954 1404 aaPredicted RBP23.52■■□□□ 1.36
LSM6-204ENST00000504181 ADCY10Q96PN6 1610 aa23.51■■□□□ 1.35
LSM6-204ENST00000504181 HECW2Q9P2P5 1572 aa23.51■■□□□ 1.35
LSM6-204ENST00000504181 ADGRL1O94910 1474 aa23.46■■□□□ 1.35
LSM6-204ENST00000504181 NPM1P06748 294 aaKnown RBP eCLIP23.46■■□□□ 1.35
LSM6-204ENST00000504181 FHAD1B1AJZ9 1412 aa23.45■■□□□ 1.34
LSM6-204ENST00000504181 RUSC2Q8N2Y8 1516 aa23.39■■□□□ 1.34
LSM6-204ENST00000504181 PPRC1Q5VV67 1664 aaKnown RBP23.36■■□□□ 1.33
LSM6-204ENST00000504181 JPH4Q96JJ6 628 aa23.36■■□□□ 1.33
LSM6-204ENST00000504181 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
LSM6-204ENST00000504181 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.32
LSM6-204ENST00000504181 BIVM-ERCC5R4GMW8 1640 aa23.3■■□□□ 1.32
LSM6-204ENST00000504181 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
LSM6-204ENST00000504181 FBXO41Q8TF61 875 aa23.19■■□□□ 1.3
LSM6-204ENST00000504181 CUL7Q14999 1698 aa23.17■■□□□ 1.3
LSM6-204ENST00000504181 GLI2P10070 1586 aa23.14■■□□□ 1.3
LSM6-204ENST00000504181 COL17A1Q9UMD9 1497 aaPredicted RBP23.11■■□□□ 1.29
LSM6-204ENST00000504181 MAP3K4Q9Y6R4 1608 aa23.08■■□□□ 1.29
LSM6-204ENST00000504181 ASXL2Q76L83 1435 aa23.07■■□□□ 1.28
LSM6-204ENST00000504181 ABCC2Q92887 1545 aa23.05■■□□□ 1.28
LSM6-204ENST00000504181 PLB1Q6P1J6 1458 aa23.04■■□□□ 1.28
LSM6-204ENST00000504181 TTBK1Q5TCY1 1321 aaPredicted RBP23.03■■□□□ 1.28
LSM6-204ENST00000504181 KIAA0586Q9BVV6 1533 aa23.03■■□□□ 1.28
LSM6-204ENST00000504181 PTPRGP23470 1445 aa22.99■■□□□ 1.27
LSM6-204ENST00000504181 TEX14Q8IWB6 1497 aa22.97■■□□□ 1.27
LSM6-204ENST00000504181 KIF21BO75037 1637 aa22.94■■□□□ 1.26
LSM6-204ENST00000504181 LMTK3Q96Q04 1460 aa22.94■■□□□ 1.26
LSM6-204ENST00000504181 EPRSP07814 1512 aaKnown RBP22.93■■□□□ 1.26
LSM6-204ENST00000504181 ZCCHC11Q5TAX3 1644 aaKnown RBP22.9■■□□□ 1.26
LSM6-204ENST00000504181 TNIKQ9UKE5 1360 aa22.87■■□□□ 1.25
LSM6-204ENST00000504181 UHRF1BP1LA0JNW5 1464 aa22.86■■□□□ 1.25
LSM6-204ENST00000504181 CARMIL2Q6F5E8 1435 aa22.82■■□□□ 1.24
LSM6-204ENST00000504181 UACAQ9BZF9 1416 aa22.8■■□□□ 1.24
LSM6-204ENST00000504181 KDM5BQ9UGL1 1544 aa22.79■■□□□ 1.24
LSM6-204ENST00000504181 CFAP43Q8NDM7 1665 aa22.77■■□□□ 1.24
LSM6-204ENST00000504181 IQGAP2Q13576 1575 aa22.77■■□□□ 1.24
LSM6-204ENST00000504181 ADAMTSL3P82987 1691 aa22.74■■□□□ 1.23
LSM6-204ENST00000504181 IGF1RP08069 1367 aa22.72■■□□□ 1.23
LSM6-204ENST00000504181 PTPRMP28827 1452 aa22.7■■□□□ 1.22
LSM6-204ENST00000504181 PCF11O94913 1555 aaKnown RBP22.69■■□□□ 1.22
LSM6-204ENST00000504181 WDR7Q9Y4E6 1490 aa22.69■■□□□ 1.22
LSM6-204ENST00000504181 DISP1Q96F81 1524 aa22.68■■□□□ 1.22
LSM6-204ENST00000504181 ILDR2Q71H61 639 aa22.68■■□□□ 1.22
LSM6-204ENST00000504181 SOCS7O14512 581 aa22.66■■□□□ 1.22
LSM6-204ENST00000504181 MAGI3Q5TCQ9 1506 aa22.66■■□□□ 1.22
LSM6-204ENST00000504181 KIF27Q86VH2 1401 aa22.64■■□□□ 1.21
LSM6-204ENST00000504181 CD109Q6YHK3 1445 aa22.63■■□□□ 1.21
LSM6-204ENST00000504181 BCORL1Q5H9F3 1711 aa22.62■■□□□ 1.21
LSM6-204ENST00000504181 DISP3Q9P2K9 1392 aa22.62■■□□□ 1.21
LSM6-204ENST00000504181 MADDQ8WXG6 1647 aa22.61■■□□□ 1.21
LSM6-204ENST00000504181 KIAA0556O60303 1618 aa22.6■■□□□ 1.21
LSM6-204ENST00000504181 SUPT5HO00267 1087 aaKnown RBP22.58■■□□□ 1.21
LSM6-204ENST00000504181 CARMIL1Q5VZK9 1371 aa22.58■■□□□ 1.21
LSM6-204ENST00000504181 RIMS1Q86UR5 1692 aaKnown RBP22.56■■□□□ 1.2
LSM6-204ENST00000504181 UGGT2Q9NYU1 1516 aa22.52■■□□□ 1.2
LSM6-204ENST00000504181 KCNH8Q96L42 1107 aa22.52■■□□□ 1.2
LSM6-204ENST00000504181 ARAP3Q8WWN8 1544 aa22.52■■□□□ 1.19
LSM6-204ENST00000504181 CERKQ8TCT0 537 aa22.49■■□□□ 1.19
LSM6-204ENST00000504181 SPATA31D1Q6ZQQ2 1576 aa22.49■■□□□ 1.19
LSM6-204ENST00000504181 HSPA2P54652 639 aa22.44■■□□□ 1.18
LSM6-204ENST00000504181 CTTNBP2Q8WZ74 1663 aa22.42■■□□□ 1.18
LSM6-204ENST00000504181 ABCA8O94911 1581 aa22.42■■□□□ 1.18
LSM6-204ENST00000504181 ARID4BQ4LE39 1312 aaPredicted RBP22.39■■□□□ 1.18
LSM6-204ENST00000504181 FRMPD1Q5SYB0 1578 aa22.39■■□□□ 1.18
LSM6-204ENST00000504181 ABCA9Q8IUA7 1624 aa22.35■■□□□ 1.17
LSM6-204ENST00000504181 PLPPR3Q6T4P5 718 aa22.34■■□□□ 1.17
LSM6-204ENST00000504181 RAPGEF3O95398 923 aa22.33■■□□□ 1.17
LSM6-204ENST00000504181 ARHGEF40Q8TER5 1519 aa22.31■■□□□ 1.16
LSM6-204ENST00000504181 FER1L4A9Z1Z3 1794 aa22.3■■□□□ 1.16
LSM6-204ENST00000504181 RAPGEF2Q9Y4G8 1499 aa22.29■■□□□ 1.16
LSM6-204ENST00000504181 SIGLEC1Q9BZZ2 1709 aa22.28■■□□□ 1.16
LSM6-204ENST00000504181 PHLDB1Q86UU1 1377 aa22.27■■□□□ 1.16
LSM6-204ENST00000504181 RICTORQ6R327 1708 aa22.27■■□□□ 1.16
LSM6-204ENST00000504181 PREX1Q8TCU6 1659 aa22.25■■□□□ 1.15
LSM6-204ENST00000504181 NEO1Q92859 1461 aa22.24■■□□□ 1.15
LSM6-204ENST00000504181 STRCQ7RTU9 1775 aa22.24■■□□□ 1.15
LSM6-204ENST00000504181 GOLGA3Q08378 1498 aa22.23■■□□□ 1.15
LSM6-204ENST00000504181 ARID3CA6NKF2 412 aa22.21■■□□□ 1.15
LSM6-204ENST00000504181 SENP3Q9H4L4 574 aaPredicted RBP22.19■■□□□ 1.14
LSM6-204ENST00000504181 TTC37Q6PGP7 1564 aa22.18■■□□□ 1.14
LSM6-204ENST00000504181 FANCAO15360 1455 aa22.16■■□□□ 1.14
LSM6-204ENST00000504181 ATP10BO94823 1461 aa22.16■■□□□ 1.14
LSM6-204ENST00000504181 POGZQ7Z3K3 1410 aa22.14■■□□□ 1.13
LSM6-204ENST00000504181 DENND4BO75064 1496 aaPredicted RBP22.09■■□□□ 1.13
LSM6-204ENST00000504181 CFAP74Q9C0B2 1584 aa22.08■■□□□ 1.13
LSM6-204ENST00000504181 YEATS2Q9ULM3 1422 aa22.08■■□□□ 1.13
LSM6-204ENST00000504181 ZFYVE16Q7Z3T8 1539 aa22.08■■□□□ 1.13
LSM6-204ENST00000504181 AKNAQ7Z591 1439 aa22.07■■□□□ 1.12
LSM6-204ENST00000504181 MLECQ14165 292 aa22.07■■□□□ 1.12
LSM6-204ENST00000504181 EFCAB5A4FU69 1503 aa22.06■■□□□ 1.12
LSM6-204ENST00000504181 ZMYM4Q5VZL5 1548 aa22.06■■□□□ 1.12
LSM6-204ENST00000504181 RAPGEF6Q8TEU7 1601 aa22.04■■□□□ 1.12
LSM6-204ENST00000504181 SETD1BQ9UPS6 1966 aaKnown RBP22.02■■□□□ 1.12
LSM6-204ENST00000504181 DMRT2Q9Y5R5 561 aa22.02■■□□□ 1.12
LSM6-204ENST00000504181 FHOD3Q2V2M9 1422 aa22.02■■□□□ 1.12
LSM6-204ENST00000504181 HECW1Q76N89 1606 aa21.99■■□□□ 1.11
LSM6-204ENST00000504181 ARHGEF12Q9NZN5 1544 aa21.99■■□□□ 1.11
LSM6-204ENST00000504181 LTBP4Q8N2S1 1624 aa21.98■■□□□ 1.11
LSM6-204ENST00000504181 P3H3Q8IVL6 736 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms