RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
PCDHA1-203ENST00000504120 EIF4G2P78344 907 aaKnown RBP eCLIP22.1■■□□□ 1.13
PCDHA1-203ENST00000504120 MIER1Q8N108 512 aa22.08■■□□□ 1.12
PCDHA1-203ENST00000504120 KIF27Q86VH2 1401 aa22.08■■□□□ 1.12
PCDHA1-203ENST00000504120 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
PCDHA1-203ENST00000504120 CEP164Q9UPV0 1460 aa22.04■■□□□ 1.12
PCDHA1-203ENST00000504120 TNIKQ9UKE5 1360 aa22.04■■□□□ 1.12
PCDHA1-203ENST00000504120 RRP7BPQ9NSQ0 103 aa22.01■■□□□ 1.11
PCDHA1-203ENST00000504120 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
PCDHA1-203ENST00000504120 PLPPR3Q6T4P5 718 aa21.99■■□□□ 1.11
PCDHA1-203ENST00000504120 HIRIP3Q9BW71 556 aaPredicted RBP21.97■■□□□ 1.11
PCDHA1-203ENST00000504120 PLEKHD1A6NEE1 506 aa21.95■■□□□ 1.1
PCDHA1-203ENST00000504120 SMARCA2P51531 1590 aa21.92■■□□□ 1.1
PCDHA1-203ENST00000504120 MYH16Q9H6N6 1097 aa21.89■■□□□ 1.1
PCDHA1-203ENST00000504120 SCAF1Q9H7N4 1312 aaKnown RBP21.88■■□□□ 1.09
PCDHA1-203ENST00000504120 IRX6P78412 446 aaPredicted RBP21.88■■□□□ 1.09
PCDHA1-203ENST00000504120 EIF5BO60841 1220 aaKnown RBP21.87■■□□□ 1.09
PCDHA1-203ENST00000504120 NBR1Q14596 966 aa21.86■■□□□ 1.09
PCDHA1-203ENST00000504120 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
PCDHA1-203ENST00000504120 KCNH8Q96L42 1107 aa21.83■■□□□ 1.09
PCDHA1-203ENST00000504120 CDCA8Q53HL2 280 aa21.82■■□□□ 1.08
PCDHA1-203ENST00000504120 CFDP1Q9UEE9 299 aaPredicted RBP21.81■■□□□ 1.08
PCDHA1-203ENST00000504120 PPP1R15AO75807 674 aaPredicted RBP21.78■■□□□ 1.08
PCDHA1-203ENST00000504120 RGL3Q3MIN7 710 aa21.78■■□□□ 1.08
PCDHA1-203ENST00000504120 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.08
PCDHA1-203ENST00000504120 DDRGK1Q96HY6 314 aa21.77■■□□□ 1.08
PCDHA1-203ENST00000504120 CFAP53Q96M91 514 aa21.76■■□□□ 1.07
PCDHA1-203ENST00000504120 KNSTRNQ9Y448 316 aa21.74■■□□□ 1.07
PCDHA1-203ENST00000504120 BECN1Q14457 450 aa21.74■■□□□ 1.07
PCDHA1-203ENST00000504120 CARD11Q9BXL7 1154 aa21.72■■□□□ 1.07
PCDHA1-203ENST00000504120 SOGA1O94964 1423 aa21.7■■□□□ 1.07
PCDHA1-203ENST00000504120 CUX2O14529 1486 aa21.69■■□□□ 1.06
PCDHA1-203ENST00000504120 ERCC6Q03468 1493 aa21.69■■□□□ 1.06
PCDHA1-203ENST00000504120 CARMIL1Q5VZK9 1371 aa21.68■■□□□ 1.06
PCDHA1-203ENST00000504120 ARXQ96QS3 562 aa21.67■■□□□ 1.06
PCDHA1-203ENST00000504120 WIZO95785 1651 aa21.66■■□□□ 1.06
PCDHA1-203ENST00000504120 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
PCDHA1-203ENST00000504120 GLIPR1L2Q4G1C9 344 aa21.66■■□□□ 1.06
PCDHA1-203ENST00000504120 ANP32EQ9BTT0 268 aa21.64■■□□□ 1.05
PCDHA1-203ENST00000504120 C14orf37Q86TY3 774 aa21.63■■□□□ 1.05
PCDHA1-203ENST00000504120 SUPT16HQ9Y5B9 1047 aaKnown RBP21.62■■□□□ 1.05
PCDHA1-203ENST00000504120 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
PCDHA1-203ENST00000504120 ZBTB7CA1YPR0 619 aa21.6■■□□□ 1.05
PCDHA1-203ENST00000504120 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
PCDHA1-203ENST00000504120 SIN3AQ96ST3 1273 aa21.6■■□□□ 1.05
PCDHA1-203ENST00000504120 GOLGA6L22H0YM25 854 aa21.58■■□□□ 1.05
PCDHA1-203ENST00000504120 NCLP19338 710 aaKnown RBP21.58■■□□□ 1.05
PCDHA1-203ENST00000504120 PDS5BQ9NTI5 1447 aa21.58■■□□□ 1.05
PCDHA1-203ENST00000504120 CCNB3Q8WWL7 1395 aa21.58■■□□□ 1.04
PCDHA1-203ENST00000504120 SMARCA4P51532 1647 aa21.57■■□□□ 1.04
PCDHA1-203ENST00000504120 FTSJ3Q8IY81 847 aaKnown RBP21.56■■□□□ 1.04
PCDHA1-203ENST00000504120 TIMELESSQ9UNS1 1208 aa21.55■■□□□ 1.04
PCDHA1-203ENST00000504120 NUDCQ9Y266 331 aa21.55■■□□□ 1.04
PCDHA1-203ENST00000504120 ATAD2BQ9ULI0 1458 aa21.54■■□□□ 1.04
PCDHA1-203ENST00000504120 PPP4R2Q9NY27 417 aa21.54■■□□□ 1.04
PCDHA1-203ENST00000504120 MAPK8IP3Q9UPT6 1336 aa21.54■■□□□ 1.04
PCDHA1-203ENST00000504120 PPM1GO15355 546 aaPredicted RBP21.51■■□□□ 1.03
PCDHA1-203ENST00000504120 CASC1Q6TDU7 716 aa21.51■■□□□ 1.03
PCDHA1-203ENST00000504120 A0A0G2JS52 829 aa21.51■■□□□ 1.03
PCDHA1-203ENST00000504120 VPS8Q8N3P4 1428 aa21.51■■□□□ 1.03
PCDHA1-203ENST00000504120 SENP3-EIF4A1A0A087X0R7 540 aa21.49■■□□□ 1.03
PCDHA1-203ENST00000504120 TRIM44Q96DX7 344 aaPredicted RBP21.48■■□□□ 1.03
PCDHA1-203ENST00000504120 ARID4BQ4LE39 1312 aaPredicted RBP21.48■■□□□ 1.03
PCDHA1-203ENST00000504120 CADPSQ9ULU8 1353 aa21.48■■□□□ 1.03
PCDHA1-203ENST00000504120 PLEKHG5O94827 1062 aa21.48■■□□□ 1.03
PCDHA1-203ENST00000504120 POGKQ9P215 609 aa21.47■■□□□ 1.03
PCDHA1-203ENST00000504120 NEUROD2Q15784 382 aa21.47■■□□□ 1.03
PCDHA1-203ENST00000504120 CHMP4BQ9H444 224 aaKnown RBP21.45■■□□□ 1.02
PCDHA1-203ENST00000504120 TMF1P82094 1093 aa21.43■■□□□ 1.02
PCDHA1-203ENST00000504120 MS4A1P11836 297 aa21.43■■□□□ 1.02
PCDHA1-203ENST00000504120 EIF4G1Q04637 1599 aaKnown RBP21.42■■□□□ 1.02
PCDHA1-203ENST00000504120 CC2D1BQ5T0F9 858 aaKnown RBP21.41■■□□□ 1.02
PCDHA1-203ENST00000504120 LAS1LQ9Y4W2 734 aaKnown RBP21.41■■□□□ 1.02
PCDHA1-203ENST00000504120 CDK11BP21127 795 aaKnown RBP21.4■■□□□ 1.02
PCDHA1-203ENST00000504120 PNNQ9H307 717 aaKnown RBP21.4■■□□□ 1.02
PCDHA1-203ENST00000504120 DCAF11Q8TEB1 546 aa21.4■■□□□ 1.02
PCDHA1-203ENST00000504120 HAP1P54257 671 aaPredicted RBP21.39■■□□□ 1.01
PCDHA1-203ENST00000504120 KANK1Q14678 1352 aa21.38■■□□□ 1.01
PCDHA1-203ENST00000504120 FRAT1Q92837 279 aaPredicted RBP21.38■■□□□ 1.01
PCDHA1-203ENST00000504120 CCER2I3L3R5 266 aa21.38■■□□□ 1.01
PCDHA1-203ENST00000504120 SETD5Q9C0A6 1442 aa21.38■■□□□ 1.01
PCDHA1-203ENST00000504120 RGS3P49796 1198 aa21.35■■□□□ 1.01
PCDHA1-203ENST00000504120 TNNT2P45379 298 aaPredicted RBP21.35■■□□□ 1.01
PCDHA1-203ENST00000504120 ARHGAP35Q9NRY4 1499 aa21.34■■□□□ 1.01
PCDHA1-203ENST00000504120 ZRSR1Q15695 479 aaKnown RBP21.34■■□□□ 1.01
PCDHA1-203ENST00000504120 U2SURPO15042 1029 aaKnown RBP21.33■■□□□ 1
PCDHA1-203ENST00000504120 FMN1Q68DA7 1419 aa21.31■■□□□ 1
PCDHA1-203ENST00000504120 PTMAP06454 111 aaKnown RBP21.29■■□□□ 1
PCDHA1-203ENST00000504120 NOP58Q9Y2X3 529 aaKnown RBP21.29■■□□□ 1
PCDHA1-203ENST00000504120 TDRD9Q8NDG6 1382 aaKnown RBP21.29■■□□□ 1
PCDHA1-203ENST00000504120 CARMIL2Q6F5E8 1435 aa21.28■■□□□ 1
PCDHA1-203ENST00000504120 RAPGEF2Q9Y4G8 1499 aa21.28■■□□□ 1
PCDHA1-203ENST00000504120 HSPA5P11021 654 aaKnown RBP21.27■■□□□ 1
PCDHA1-203ENST00000504120 B4GALNT3Q6L9W6 998 aa21.27■■□□□ 1
PCDHA1-203ENST00000504120 HDGFP51858 240 aaKnown RBP21.26■□□□□ 0.99
PCDHA1-203ENST00000504120 ERICH6BQ5W0A0 696 aa21.24■□□□□ 0.99
PCDHA1-203ENST00000504120 LMOD2Q6P5Q4 547 aa21.23■□□□□ 0.99
PCDHA1-203ENST00000504120 MORC1Q86VD1 984 aa21.23■□□□□ 0.99
PCDHA1-203ENST00000504120 PKD2Q13563 968 aa21.22■□□□□ 0.99
PCDHA1-203ENST00000504120 HSP90AB1P08238 724 aaKnown RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms