RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 JPH4Q96JJ6 628 aa26.27■■□□□ 1.8
TRAF4-212ENST00000498540 ADCY10Q96PN6 1610 aa26.15■■□□□ 1.78
TRAF4-212ENST00000498540 ABCC10Q5T3U5 1492 aa26.13■■□□□ 1.77
TRAF4-212ENST00000498540 MAPKBP1O60336 1514 aa26.13■■□□□ 1.77
TRAF4-212ENST00000498540 DIP2BQ9P265 1576 aa26.1■■□□□ 1.77
TRAF4-212ENST00000498540 FAM69CQ0P6D2 419 aa26.09■■□□□ 1.77
TRAF4-212ENST00000498540 KIAA0586Q9BVV6 1533 aa26.09■■□□□ 1.77
TRAF4-212ENST00000498540 CUL7Q14999 1698 aa26.07■■□□□ 1.76
TRAF4-212ENST00000498540 NPM1P06748 294 aaKnown RBP eCLIP26.06■■□□□ 1.76
TRAF4-212ENST00000498540 IGF1RP08069 1367 aa26.06■■□□□ 1.76
TRAF4-212ENST00000498540 KIF27Q86VH2 1401 aa26.04■■□□□ 1.76
TRAF4-212ENST00000498540 TSPOAP1O95153 1857 aa25.95■■□□□ 1.74
TRAF4-212ENST00000498540 KDM6BO15054 1643 aa25.94■■□□□ 1.74
TRAF4-212ENST00000498540 CARMIL1Q5VZK9 1371 aa25.88■■□□□ 1.73
TRAF4-212ENST00000498540 PTPRGP23470 1445 aa25.88■■□□□ 1.73
TRAF4-212ENST00000498540 TTBK1Q5TCY1 1321 aaPredicted RBP25.84■■□□□ 1.73
TRAF4-212ENST00000498540 IQGAP2Q13576 1575 aa25.82■■□□□ 1.72
TRAF4-212ENST00000498540 TNIKQ9UKE5 1360 aa25.82■■□□□ 1.72
TRAF4-212ENST00000498540 ABCC2Q92887 1545 aa25.81■■□□□ 1.72
TRAF4-212ENST00000498540 CARMIL2Q6F5E8 1435 aa25.8■■□□□ 1.72
TRAF4-212ENST00000498540 KDM4FA0A1W2PPD8 638 aa25.77■■□□□ 1.72
TRAF4-212ENST00000498540 PPRC1Q5VV67 1664 aaKnown RBP25.76■■□□□ 1.71
TRAF4-212ENST00000498540 ASXL2Q76L83 1435 aa25.75■■□□□ 1.71
TRAF4-212ENST00000498540 DISP1Q96F81 1524 aa25.73■■□□□ 1.71
TRAF4-212ENST00000498540 UHRF1BP1LA0JNW5 1464 aa25.72■■□□□ 1.71
TRAF4-212ENST00000498540 GLI2P10070 1586 aa25.72■■□□□ 1.71
TRAF4-212ENST00000498540 PLB1Q6P1J6 1458 aa25.72■■□□□ 1.71
TRAF4-212ENST00000498540 UACAQ9BZF9 1416 aa25.69■■□□□ 1.7
TRAF4-212ENST00000498540 UGGT2Q9NYU1 1516 aa25.64■■□□□ 1.7
TRAF4-212ENST00000498540 RAPGEF2Q9Y4G8 1499 aa25.63■■□□□ 1.69
TRAF4-212ENST00000498540 KDM5BQ9UGL1 1544 aa25.63■■□□□ 1.69
TRAF4-212ENST00000498540 KIAA0556O60303 1618 aa25.61■■□□□ 1.69
TRAF4-212ENST00000498540 ZCCHC11Q5TAX3 1644 aaKnown RBP25.61■■□□□ 1.69
TRAF4-212ENST00000498540 MAP3K4Q9Y6R4 1608 aa25.6■■□□□ 1.69
TRAF4-212ENST00000498540 EPRSP07814 1512 aaKnown RBP25.6■■□□□ 1.69
TRAF4-212ENST00000498540 COL17A1Q9UMD9 1497 aaPredicted RBP25.56■■□□□ 1.68
TRAF4-212ENST00000498540 ADGRL1O94910 1474 aa25.53■■□□□ 1.68
TRAF4-212ENST00000498540 CTTNBP2Q8WZ74 1663 aa25.5■■□□□ 1.67
TRAF4-212ENST00000498540 TEX14Q8IWB6 1497 aa25.49■■□□□ 1.67
TRAF4-212ENST00000498540 WDR7Q9Y4E6 1490 aa25.46■■□□□ 1.67
TRAF4-212ENST00000498540 ABCA8O94911 1581 aa25.39■■□□□ 1.65
TRAF4-212ENST00000498540 GOLGA3Q08378 1498 aa25.37■■□□□ 1.65
TRAF4-212ENST00000498540 CFAP43Q8NDM7 1665 aa25.36■■□□□ 1.65
TRAF4-212ENST00000498540 MAGI3Q5TCQ9 1506 aa25.32■■□□□ 1.64
TRAF4-212ENST00000498540 CD109Q6YHK3 1445 aa25.3■■□□□ 1.64
TRAF4-212ENST00000498540 PRXQ9BXM0 1461 aa25.3■■□□□ 1.64
TRAF4-212ENST00000498540 HECW2Q9P2P5 1572 aa25.29■■□□□ 1.64
TRAF4-212ENST00000498540 KCNH8Q96L42 1107 aa25.28■■□□□ 1.64
TRAF4-212ENST00000498540 ILDR1Q86SU0 546 aaPredicted RBP25.26■■□□□ 1.63
TRAF4-212ENST00000498540 KIF21BO75037 1637 aa25.19■■□□□ 1.62
TRAF4-212ENST00000498540 ARID3CA6NKF2 412 aa25.16■■□□□ 1.62
TRAF4-212ENST00000498540 ATP10BO94823 1461 aa25.15■■□□□ 1.62
TRAF4-212ENST00000498540 ARAP3Q8WWN8 1544 aa25.13■■□□□ 1.61
TRAF4-212ENST00000498540 P3H3Q8IVL6 736 aa25.13■■□□□ 1.61
TRAF4-212ENST00000498540 ABCA9Q8IUA7 1624 aa25.11■■□□□ 1.61
TRAF4-212ENST00000498540 SAMD9Q5K651 1589 aa25.1■■□□□ 1.61
TRAF4-212ENST00000498540 RAPGEF6Q8TEU7 1601 aa25.06■■□□□ 1.6
TRAF4-212ENST00000498540 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
TRAF4-212ENST00000498540 ADAMTSL3P82987 1691 aa24.98■■□□□ 1.59
TRAF4-212ENST00000498540 PHLDB1Q86UU1 1377 aa24.98■■□□□ 1.59
TRAF4-212ENST00000498540 CSRNP3Q8WYN3 585 aa24.98■■□□□ 1.59
TRAF4-212ENST00000498540 FRMPD1Q5SYB0 1578 aa24.97■■□□□ 1.59
TRAF4-212ENST00000498540 NUP153P49790 1475 aaKnown RBP24.96■■□□□ 1.59
TRAF4-212ENST00000498540 NEO1Q92859 1461 aa24.96■■□□□ 1.59
TRAF4-212ENST00000498540 RAPGEF3O95398 923 aa24.96■■□□□ 1.59
TRAF4-212ENST00000498540 PTPRMP28827 1452 aa24.93■■□□□ 1.58
TRAF4-212ENST00000498540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.92■■□□□ 1.58
TRAF4-212ENST00000498540 HNRNPUL2Q1KMD3 747 aaKnown RBP24.92■■□□□ 1.58
TRAF4-212ENST00000498540 FHOD3Q2V2M9 1422 aa24.91■■□□□ 1.58
TRAF4-212ENST00000498540 BCORL1Q5H9F3 1711 aa24.9■■□□□ 1.58
TRAF4-212ENST00000498540 RANGAP1P46060 587 aaPredicted RBP24.88■■□□□ 1.57
TRAF4-212ENST00000498540 MADDQ8WXG6 1647 aa24.87■■□□□ 1.57
TRAF4-212ENST00000498540 RICTORQ6R327 1708 aa24.84■■□□□ 1.57
TRAF4-212ENST00000498540 ARHGEF40Q8TER5 1519 aa24.84■■□□□ 1.57
TRAF4-212ENST00000498540 EEA1Q15075 1411 aa24.83■■□□□ 1.57
TRAF4-212ENST00000498540 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.8■■□□□ 1.562e-6■■■□□ 16.3
TRAF4-212ENST00000498540 ARID4BQ4LE39 1312 aaPredicted RBP24.8■■□□□ 1.56
TRAF4-212ENST00000498540 TTC37Q6PGP7 1564 aa24.79■■□□□ 1.56
TRAF4-212ENST00000498540 CFAP74Q9C0B2 1584 aa24.79■■□□□ 1.56
TRAF4-212ENST00000498540 DENND4BO75064 1496 aaPredicted RBP24.78■■□□□ 1.56
TRAF4-212ENST00000498540 RIMS1Q86UR5 1692 aaKnown RBP24.78■■□□□ 1.56
TRAF4-212ENST00000498540 AKNAQ7Z591 1439 aa24.78■■□□□ 1.56
TRAF4-212ENST00000498540 FANCAO15360 1455 aa24.77■■□□□ 1.56
TRAF4-212ENST00000498540 PCF11O94913 1555 aaKnown RBP24.77■■□□□ 1.56
TRAF4-212ENST00000498540 EFCAB5A4FU69 1503 aa24.76■■□□□ 1.55
TRAF4-212ENST00000498540 PLEKHD1A6NEE1 506 aa24.76■■□□□ 1.55
TRAF4-212ENST00000498540 LMTK3Q96Q04 1460 aa24.74■■□□□ 1.55
TRAF4-212ENST00000498540 SIGLEC1Q9BZZ2 1709 aa24.73■■□□□ 1.55
TRAF4-212ENST00000498540 ZMYM4Q5VZL5 1548 aa24.72■■□□□ 1.55
TRAF4-212ENST00000498540 CDK13Q14004 1512 aaKnown RBP24.71■■□□□ 1.55
TRAF4-212ENST00000498540 FBXO41Q8TF61 875 aa24.71■■□□□ 1.55
TRAF4-212ENST00000498540 ZFYVE16Q7Z3T8 1539 aa24.68■■□□□ 1.54
TRAF4-212ENST00000498540 YEATS2Q9ULM3 1422 aa24.68■■□□□ 1.54
TRAF4-212ENST00000498540 HECW1Q76N89 1606 aa24.64■■□□□ 1.54
TRAF4-212ENST00000498540 POGZQ7Z3K3 1410 aa24.62■■□□□ 1.53
TRAF4-212ENST00000498540 MAGI2Q86UL8 1455 aa24.61■■□□□ 1.53
TRAF4-212ENST00000498540 FER1L4A9Z1Z3 1794 aa24.59■■□□□ 1.53
TRAF4-212ENST00000498540 PLPPR3Q6T4P5 718 aa24.59■■□□□ 1.53
TRAF4-212ENST00000498540 PLCH2O75038 1416 aa24.59■■□□□ 1.53
TRAF4-212ENST00000498540 SCAPERQ9BY12 1400 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms