RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PDCL3Q9H2J4 239 aa7.58□□□□□ -1.2
USF3-204ENST00000496826 PRKCSHP14314 528 aaPredicted RBP7.58□□□□□ -1.2
USF3-204ENST00000496826 TPM4P67936 248 aa7.57□□□□□ -1.2
USF3-204ENST00000496826 E9PSI1 815 aa7.57□□□□□ -1.2
USF3-204ENST00000496826 CHMP4AQ9BY43 222 aa7.57□□□□□ -1.2
USF3-204ENST00000496826 PHF14O94880 888 aa7.57□□□□□ -1.2
USF3-204ENST00000496826 NEXNQ0ZGT2 675 aa7.57□□□□□ -1.2
USF3-204ENST00000496826 HAP1P54257 671 aaPredicted RBP7.56□□□□□ -1.2
USF3-204ENST00000496826 CLSTN1O94985 981 aa7.56□□□□□ -1.2
USF3-204ENST00000496826 HMGN5P82970 282 aaKnown RBP7.55□□□□□ -1.2
USF3-204ENST00000496826 HTATSF1O43719 755 aaKnown RBP7.54□□□□□ -1.2
USF3-204ENST00000496826 LAS1LQ9Y4W2 734 aaKnown RBP7.54□□□□□ -1.2
USF3-204ENST00000496826 DIEXFQ68CQ4 756 aaKnown RBP7.54□□□□□ -1.2
USF3-204ENST00000496826 DDRGK1Q96HY6 314 aa7.54□□□□□ -1.2
USF3-204ENST00000496826 ZRSR2Q15696 482 aaKnown RBP7.53□□□□□ -1.2
USF3-204ENST00000496826 NCBP3Q53F19 620 aaKnown RBP7.52□□□□□ -1.21
USF3-204ENST00000496826 RDXP35241 583 aaKnown RBP7.52□□□□□ -1.21
USF3-204ENST00000496826 LMOD2Q6P5Q4 547 aa7.52□□□□□ -1.21
USF3-204ENST00000496826 FEZ1Q99689 392 aa7.51□□□□□ -1.21
USF3-204ENST00000496826 VGFO15240 615 aaPredicted RBP7.5□□□□□ -1.21
USF3-204ENST00000496826 TMX4Q9H1E5 349 aaPredicted RBP7.5□□□□□ -1.21
USF3-204ENST00000496826 PODXL2Q9NZ53 605 aa7.5□□□□□ -1.21
USF3-204ENST00000496826 CDR1P51861 262 aa7.5□□□□□ -1.21
USF3-204ENST00000496826 CHIC1Q5VXU3 224 aa7.49□□□□□ -1.21
USF3-204ENST00000496826 CCDC112Q8NEF3 446 aa7.49□□□□□ -1.21
USF3-204ENST00000496826 ACIN1Q9UKV3 1341 aaKnown RBP7.49□□□□□ -1.21
USF3-204ENST00000496826 WDR43Q15061 677 aaKnown RBP eCLIP7.49□□□□□ -1.21
USF3-204ENST00000496826 CCDC70Q6NSX1 233 aa7.49□□□□□ -1.21
USF3-204ENST00000496826 CAGE1Q8TC20 777 aa7.49□□□□□ -1.21
USF3-204ENST00000496826 APPP05067 770 aa7.49□□□□□ -1.21
USF3-204ENST00000496826 GPS2Q13227 327 aa7.47□□□□□ -1.21
USF3-204ENST00000496826 TRIM41Q8WV44 630 aa7.45□□□□□ -1.22
USF3-204ENST00000496826 NPHP1O15259 732 aa7.45□□□□□ -1.22
USF3-204ENST00000496826 CNKSR2Q8WXI2 1034 aa7.44□□□□□ -1.22
USF3-204ENST00000496826 TULP1O00294 542 aaPredicted RBP7.44□□□□□ -1.22
USF3-204ENST00000496826 CHMP4CQ96CF2 233 aa7.43□□□□□ -1.22
USF3-204ENST00000496826 CCDC191Q8NCU4 936 aa7.43□□□□□ -1.22
USF3-204ENST00000496826 DCTN1Q14203 1278 aa7.42□□□□□ -1.22
USF3-204ENST00000496826 DCAF8L1A6NGE4 600 aa7.42□□□□□ -1.22
USF3-204ENST00000496826 ARGLU1Q9NWB6 273 aaPredicted RBP7.41□□□□□ -1.22
USF3-204ENST00000496826 GOLGA6L3A6NEY3 463 aa7.41□□□□□ -1.22
USF3-204ENST00000496826 NOM1Q5C9Z4 860 aaKnown RBP7.41□□□□□ -1.22
USF3-204ENST00000496826 TPM3P06753 285 aa7.4□□□□□ -1.22
USF3-204ENST00000496826 DEF6Q9H4E7 631 aa7.4□□□□□ -1.22
USF3-204ENST00000496826 CCDC175P0C221 793 aa7.4□□□□□ -1.23
USF3-204ENST00000496826 INCENPQ9NQS7 918 aa7.4□□□□□ -1.23
USF3-204ENST00000496826 PPARGC1BQ86YN6 1023 aaKnown RBP7.39□□□□□ -1.23
USF3-204ENST00000496826 ANKRD18AQ8IVF6 992 aa7.39□□□□□ -1.23
USF3-204ENST00000496826 MEX3CQ5U5Q3 659 aaKnown RBP7.39□□□□□ -1.23
USF3-204ENST00000496826 MYO6Q9UM54 1294 aa7.39□□□□□ -1.23
USF3-204ENST00000496826 STAG3Q9UJ98 1225 aa7.39□□□□□ -1.23
USF3-204ENST00000496826 PPM1GO15355 546 aaPredicted RBP7.39□□□□□ -1.23
USF3-204ENST00000496826 AEBP2Q6ZN18 517 aaPredicted RBP7.39□□□□□ -1.23
USF3-204ENST00000496826 FGD1P98174 961 aa7.38□□□□□ -1.23
USF3-204ENST00000496826 HOMEZQ8IX15 550 aa7.38□□□□□ -1.23
USF3-204ENST00000496826 HRCP23327 699 aa7.38□□□□□ -1.23
USF3-204ENST00000496826 HDAC5Q9UQL6 1122 aa7.38□□□□□ -1.23
USF3-204ENST00000496826 MSNP26038 577 aaKnown RBP7.38□□□□□ -1.23
USF3-204ENST00000496826 IPO9Q96P70 1041 aaKnown RBP7.37□□□□□ -1.23
USF3-204ENST00000496826 NF2P35240 595 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 EIF3DO15371 548 aaKnown RBP eCLIP7.37□□□□□ -1.23
USF3-204ENST00000496826 MNS1Q8NEH6 495 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 CHMP3Q9Y3E7 222 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 TPM2P07951 284 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 TEX35Q5T0J7 233 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 FOXD1Q16676 465 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 TSR1Q2NL82 804 aaKnown RBP7.37□□□□□ -1.23
USF3-204ENST00000496826 CFAP57Q96MR6 1250 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 MAP7D2Q96T17 732 aa7.37□□□□□ -1.23
USF3-204ENST00000496826 FYB1O15117 783 aa7.36□□□□□ -1.23
USF3-204ENST00000496826 MS4A1P11836 297 aa7.36□□□□□ -1.23
USF3-204ENST00000496826 MCCP23508 829 aa7.36□□□□□ -1.23
USF3-204ENST00000496826 GNL2Q13823 731 aaKnown RBP7.35□□□□□ -1.23
USF3-204ENST00000496826 CSPP1Q1MSJ5 1256 aa7.35□□□□□ -1.23
USF3-204ENST00000496826 ZNF710Q8N1W2 664 aa7.35□□□□□ -1.23
USF3-204ENST00000496826 SYAP1Q96A49 352 aaPredicted RBP7.35□□□□□ -1.23
USF3-204ENST00000496826 MAP3K9P80192 1104 aa7.35□□□□□ -1.23
USF3-204ENST00000496826 CALD1Q05682 793 aaKnown RBP7.34□□□□□ -1.23
USF3-204ENST00000496826 GTF3C3Q9Y5Q9 886 aa7.34□□□□□ -1.23
USF3-204ENST00000496826 GBP4Q96PP9 640 aa7.34□□□□□ -1.23
USF3-204ENST00000496826 GOLGA6L7A0A1B0GV03 622 aa7.33□□□□□ -1.24
USF3-204ENST00000496826 PPM1EQ8WY54 764 aa7.33□□□□□ -1.24
USF3-204ENST00000496826 EZRP15311 586 aaKnown RBP7.33□□□□□ -1.24
USF3-204ENST00000496826 ACBD3Q9H3P7 528 aa7.33□□□□□ -1.24
USF3-204ENST00000496826 TPM1P09493 284 aa7.33□□□□□ -1.24
USF3-204ENST00000496826 DRC7Q8IY82 874 aa7.33□□□□□ -1.24
USF3-204ENST00000496826 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.33□□□□□ -1.24
USF3-204ENST00000496826 C14orf37Q86TY3 774 aa7.32□□□□□ -1.24
USF3-204ENST00000496826 SPATA24Q86W54 205 aa7.32□□□□□ -1.24
USF3-204ENST00000496826 CLGNO14967 610 aa7.32□□□□□ -1.24
USF3-204ENST00000496826 FAM50AQ14320 339 aaKnown RBP7.32□□□□□ -1.24
USF3-204ENST00000496826 GRIPAP1Q4V328 841 aa7.32□□□□□ -1.24
USF3-204ENST00000496826 SEPT10Q9P0V9 454 aa7.32□□□□□ -1.24
USF3-204ENST00000496826 CCDC173Q0VFZ6 552 aa7.31□□□□□ -1.24
USF3-204ENST00000496826 NAP1L5Q96NT1 182 aaPredicted RBP7.31□□□□□ -1.24
USF3-204ENST00000496826 DIAPH3Q9NSV4 1193 aa7.31□□□□□ -1.24
USF3-204ENST00000496826 CREBRFQ8IUR6 639 aa7.31□□□□□ -1.24
USF3-204ENST00000496826 FAM193AP78312 1265 aa7.31□□□□□ -1.24
USF3-204ENST00000496826 KIF3AQ9Y496 699 aa7.31□□□□□ -1.24
USF3-204ENST00000496826 KIF20AO95235 890 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms