RNA–Protein interactions for RNA: ENST00000495693.1

EPHA4-213, Transcript of EPH receptor A4, humanhuman

TSL 3

Gene EPHA4, Length 588 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-213ENST00000495693 IFNLR1Q8IU57 520 aaPredicted RBP14.46□□□□□ -0.09
EPHA4-213ENST00000495693 HAX1O00165 279 aa14.45□□□□□ -0.1
EPHA4-213ENST00000495693 UNC13AQ9UPW8 1703 aa14.41□□□□□ -0.1
EPHA4-213ENST00000495693 CD44P16070 742 aaKnown RBP14.39□□□□□ -0.11
EPHA4-213ENST00000495693 KLHL34Q8N239 644 aa14.39□□□□□ -0.11
EPHA4-213ENST00000495693 NUBP1P53384 320 aa14.38□□□□□ -0.11
EPHA4-213ENST00000495693 CECR2Q9BXF3 1484 aa14.33□□□□□ -0.12
EPHA4-213ENST00000495693 PAK3O75914 559 aaPredicted RBP14.33□□□□□ -0.12
EPHA4-213ENST00000495693 EVX2Q03828 476 aa14.33□□□□□ -0.12
EPHA4-213ENST00000495693 SPOCK2Q92563 424 aa14.33□□□□□ -0.12
EPHA4-213ENST00000495693 MROH2BQ7Z745 1585 aa14.33□□□□□ -0.12
EPHA4-213ENST00000495693 RASEFQ8IZ41 740 aa14.31□□□□□ -0.12
EPHA4-213ENST00000495693 SMARCA4P51532 1647 aa14.29□□□□□ -0.12
EPHA4-213ENST00000495693 ZNF579Q8NAF0 562 aaKnown RBP14.27□□□□□ -0.13
EPHA4-213ENST00000495693 ZRANB1Q9UGI0 708 aa14.27□□□□□ -0.13
EPHA4-213ENST00000495693 FAM212AQ96EL1 285 aa14.26□□□□□ -0.13
EPHA4-213ENST00000495693 SP7Q8TDD2 431 aaPredicted RBP14.25□□□□□ -0.13
EPHA4-213ENST00000495693 BICRAQ9NZM4 1560 aa14.25□□□□□ -0.13
EPHA4-213ENST00000495693 CLCN6P51797 869 aa14.23□□□□□ -0.13
EPHA4-213ENST00000495693 WIZO95785 1651 aa14.23□□□□□ -0.13
EPHA4-213ENST00000495693 TOP2AP11388 1531 aaKnown RBP14.22□□□□□ -0.13
EPHA4-213ENST00000495693 TSPYL2Q9H2G4 693 aaPredicted RBP14.22□□□□□ -0.13
EPHA4-213ENST00000495693 CCDC61Q9Y6R9 512 aa14.21□□□□□ -0.13
EPHA4-213ENST00000495693 GSE1Q14687 1217 aa14.19□□□□□ -0.14
EPHA4-213ENST00000495693 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
EPHA4-213ENST00000495693 DCAF8Q5TAQ9 597 aa14.15□□□□□ -0.14
EPHA4-213ENST00000495693 PHF12Q96QT6 1004 aa14.1□□□□□ -0.15
EPHA4-213ENST00000495693 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
EPHA4-213ENST00000495693 KIF12Q96FN5 646 aa14.08□□□□□ -0.16
EPHA4-213ENST00000495693 GABBR2O75899 941 aa14.07□□□□□ -0.16
EPHA4-213ENST00000495693 CHRM1P11229 460 aaPredicted RBP14.06□□□□□ -0.16
EPHA4-213ENST00000495693 TRIM41Q8WV44 630 aa14.06□□□□□ -0.16
EPHA4-213ENST00000495693 SGIP1Q9BQI5 828 aa14.06□□□□□ -0.16
EPHA4-213ENST00000495693 CIZ1Q9ULV3 898 aaPredicted RBP14.05□□□□□ -0.16
EPHA4-213ENST00000495693 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
EPHA4-213ENST00000495693 MAP3K13O43283 966 aa13.99□□□□□ -0.17
EPHA4-213ENST00000495693 PYGBP11216 843 aa13.98□□□□□ -0.17
EPHA4-213ENST00000495693 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
EPHA4-213ENST00000495693 ATAD2BQ9ULI0 1458 aa13.97□□□□□ -0.17
EPHA4-213ENST00000495693 BAZ1BQ9UIG0 1483 aaKnown RBP13.96□□□□□ -0.17
EPHA4-213ENST00000495693 GALR2O43603 387 aaPredicted RBP13.96□□□□□ -0.17
EPHA4-213ENST00000495693 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
EPHA4-213ENST00000495693 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
EPHA4-213ENST00000495693 PKD2Q13563 968 aa13.93□□□□□ -0.18
EPHA4-213ENST00000495693 HMGXB3Q12766 1538 aa13.92□□□□□ -0.18
EPHA4-213ENST00000495693 ZNF467Q7Z7K2 595 aaPredicted RBP13.89□□□□□ -0.19
EPHA4-213ENST00000495693 IFNL1Q8IU54 200 aa13.88□□□□□ -0.19
EPHA4-213ENST00000495693 NCAPD3P42695 1498 aa13.86□□□□□ -0.19
EPHA4-213ENST00000495693 EEA1Q15075 1411 aa13.83□□□□□ -0.2
EPHA4-213ENST00000495693 ECM2O94769 699 aaPredicted RBP13.83□□□□□ -0.2
EPHA4-213ENST00000495693 TIE1P35590 1138 aa13.83□□□□□ -0.2
EPHA4-213ENST00000495693 DCBLD2Q96PD2 775 aa13.82□□□□□ -0.2
EPHA4-213ENST00000495693 ASTLQ6HA08 431 aaPredicted RBP13.8□□□□□ -0.2
EPHA4-213ENST00000495693 PCDHB8Q9UN66 801 aa13.8□□□□□ -0.2
EPHA4-213ENST00000495693 AMER1Q5JTC6 1135 aaPredicted RBP13.79□□□□□ -0.2
EPHA4-213ENST00000495693 TRPC6Q9Y210 931 aa13.79□□□□□ -0.2
EPHA4-213ENST00000495693 POTEIP0CG38 1075 aa13.78□□□□□ -0.2
EPHA4-213ENST00000495693 RNF25Q96BH1 459 aaPredicted RBP13.78□□□□□ -0.2
EPHA4-213ENST00000495693 RIOK3O14730 519 aaKnown RBP13.77□□□□□ -0.21
EPHA4-213ENST00000495693 BMP2KQ9NSY1 1161 aaPredicted RBP13.76□□□□□ -0.21
EPHA4-213ENST00000495693 ATMINO43313 823 aaPredicted RBP13.75□□□□□ -0.21
EPHA4-213ENST00000495693 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
EPHA4-213ENST00000495693 WRNQ14191 1432 aaPredicted RBP eCLIP13.73□□□□□ -0.21
EPHA4-213ENST00000495693 TTLL13PA6NNM8 815 aa13.72□□□□□ -0.21
EPHA4-213ENST00000495693 TAOK2Q9UL54 1235 aa13.71□□□□□ -0.21
EPHA4-213ENST00000495693 ABCC8Q09428 1581 aa13.71□□□□□ -0.22
EPHA4-213ENST00000495693 RGL2O15211 777 aa13.7□□□□□ -0.22
EPHA4-213ENST00000495693 VGFO15240 615 aaPredicted RBP13.7□□□□□ -0.22
EPHA4-213ENST00000495693 PSEN1P49768 467 aa13.7□□□□□ -0.22
EPHA4-213ENST00000495693 TMEM106CQ9BVX2 250 aa13.69□□□□□ -0.22
EPHA4-213ENST00000495693 LOC105371045A0A1W2PR82 267 aa13.68□□□□□ -0.22
EPHA4-213ENST00000495693 ATN1P54259 1190 aaPredicted RBP13.68□□□□□ -0.22
EPHA4-213ENST00000495693 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
EPHA4-213ENST00000495693 PELP1Q8IZL8 1130 aaKnown RBP13.64□□□□□ -0.23
EPHA4-213ENST00000495693 PRDM2Q13029 1718 aa13.62□□□□□ -0.23
EPHA4-213ENST00000495693 TRIM35Q9UPQ4 493 aa13.62□□□□□ -0.23
EPHA4-213ENST00000495693 FAM9AQ8IZU1 332 aaPredicted RBP13.61□□□□□ -0.23
EPHA4-213ENST00000495693 SLC39A7Q92504 469 aa13.61□□□□□ -0.23
EPHA4-213ENST00000495693 CFTRP13569 1480 aa13.61□□□□□ -0.23
EPHA4-213ENST00000495693 IER5LQ5T953 404 aa13.6□□□□□ -0.23
EPHA4-213ENST00000495693 TOP2BQ02880 1626 aa13.6□□□□□ -0.23
EPHA4-213ENST00000495693 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.59□□□□□ -0.23
EPHA4-213ENST00000495693 C7P10643 843 aa13.59□□□□□ -0.23
EPHA4-213ENST00000495693 ZFP91Q96JP5 570 aaPredicted RBP13.59□□□□□ -0.23
EPHA4-213ENST00000495693 BIVM-ERCC5R4GMW8 1640 aa13.59□□□□□ -0.23
EPHA4-213ENST00000495693 SYNJ1O43426 1573 aa13.58□□□□□ -0.24
EPHA4-213ENST00000495693 CC2D2AQ9P2K1 1620 aa13.57□□□□□ -0.24
EPHA4-213ENST00000495693 GOLGA3Q08378 1498 aa13.55□□□□□ -0.24
EPHA4-213ENST00000495693 CEP164Q9UPV0 1460 aa13.54□□□□□ -0.24
EPHA4-213ENST00000495693 KIF21BO75037 1637 aa13.53□□□□□ -0.24
EPHA4-213ENST00000495693 METRNQ9UJH8 293 aa13.53□□□□□ -0.24
EPHA4-213ENST00000495693 TNIKQ9UKE5 1360 aa13.53□□□□□ -0.24
EPHA4-213ENST00000495693 TRIM26Q12899 539 aaPredicted RBP13.52□□□□□ -0.25
EPHA4-213ENST00000495693 SOGA1O94964 1423 aa13.5□□□□□ -0.25
EPHA4-213ENST00000495693 CADPSQ9ULU8 1353 aa13.5□□□□□ -0.25
EPHA4-213ENST00000495693 GOLGA2Q08379 1002 aa13.5□□□□□ -0.25
EPHA4-213ENST00000495693 STK25O00506 426 aa13.49□□□□□ -0.25
EPHA4-213ENST00000495693 HS6ST3Q8IZP7 471 aa13.49□□□□□ -0.25
EPHA4-213ENST00000495693 BCL11BQ9C0K0 894 aaPredicted RBP13.49□□□□□ -0.25
EPHA4-213ENST00000495693 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms