RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 EHMT2Q96KQ7 1210 aa17.32■□□□□ 0.36
RFC4-214ENST00000494047 RIMBP3CA6NJZ7 1639 aa17.32■□□□□ 0.36
RFC4-214ENST00000494047 RIMBP3BA6NNM3 1639 aa17.32■□□□□ 0.36
RFC4-214ENST00000494047 RIMBP3Q9UFD9 1639 aa17.32■□□□□ 0.36
RFC4-214ENST00000494047 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
RFC4-214ENST00000494047 FHAD1B1AJZ9 1412 aa17.31■□□□□ 0.36
RFC4-214ENST00000494047 ADAMTS12P58397 1594 aa17.3■□□□□ 0.36
RFC4-214ENST00000494047 PELP1Q8IZL8 1130 aaKnown RBP17.29■□□□□ 0.36
RFC4-214ENST00000494047 CLASP1Q7Z460 1538 aa17.29■□□□□ 0.36
RFC4-214ENST00000494047 GRIN2AQ12879 1464 aa17.27■□□□□ 0.36
RFC4-214ENST00000494047 APLP2Q06481 763 aa17.27■□□□□ 0.35
RFC4-214ENST00000494047 KIF27Q86VH2 1401 aa17.27■□□□□ 0.35
RFC4-214ENST00000494047 PRXQ9BXM0 1461 aa17.25■□□□□ 0.35
RFC4-214ENST00000494047 CLSPNQ9HAW4 1339 aa17.23■□□□□ 0.35
RFC4-214ENST00000494047 RAPGEF2Q9Y4G8 1499 aa17.22■□□□□ 0.35
RFC4-214ENST00000494047 NUP160Q12769 1436 aa17.22■□□□□ 0.35
RFC4-214ENST00000494047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
RFC4-214ENST00000494047 AEBP2Q6ZN18 517 aaPredicted RBP17.19■□□□□ 0.34
RFC4-214ENST00000494047 CUL7Q14999 1698 aa17.18■□□□□ 0.34
RFC4-214ENST00000494047 IGF1RP08069 1367 aa17.18■□□□□ 0.34
RFC4-214ENST00000494047 CYB5RLQ6IPT4 315 aa17.15■□□□□ 0.34
RFC4-214ENST00000494047 CEP170Q5SW79 1584 aa17.15■□□□□ 0.34
RFC4-214ENST00000494047 CENPBP07199 599 aaPredicted RBP17.15■□□□□ 0.34
RFC4-214ENST00000494047 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
RFC4-214ENST00000494047 MAP3K1Q13233 1512 aa17.09■□□□□ 0.33
RFC4-214ENST00000494047 CARMIL1Q5VZK9 1371 aa17.09■□□□□ 0.33
RFC4-214ENST00000494047 SHROOM2Q13796 1616 aa17.09■□□□□ 0.33
RFC4-214ENST00000494047 DIEXFQ68CQ4 756 aaKnown RBP17.08■□□□□ 0.32
RFC4-214ENST00000494047 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
RFC4-214ENST00000494047 JPH4Q96JJ6 628 aa17.04■□□□□ 0.32
RFC4-214ENST00000494047 KIAA0586Q9BVV6 1533 aa17.04■□□□□ 0.32
RFC4-214ENST00000494047 RRBP1Q9P2E9 1410 aaKnown RBP17.01■□□□□ 0.31
RFC4-214ENST00000494047 PRG4Q92954 1404 aaPredicted RBP17■□□□□ 0.31
RFC4-214ENST00000494047 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
RFC4-214ENST00000494047 ERCC6L2Q5T890 1561 aa16.96■□□□□ 0.31
RFC4-214ENST00000494047 IQGAP2Q13576 1575 aa16.9■□□□□ 0.3
RFC4-214ENST00000494047 ARHGAP35Q9NRY4 1499 aa16.9■□□□□ 0.3
RFC4-214ENST00000494047 EFCAB5A4FU69 1503 aa16.9■□□□□ 0.3
RFC4-214ENST00000494047 CARMIL2Q6F5E8 1435 aa16.9■□□□□ 0.3
RFC4-214ENST00000494047 TIAM1Q13009 1591 aa16.87■□□□□ 0.29
RFC4-214ENST00000494047 TTBK1Q5TCY1 1321 aaPredicted RBP16.87■□□□□ 0.29
RFC4-214ENST00000494047 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
RFC4-214ENST00000494047 CFAP43Q8NDM7 1665 aa16.86■□□□□ 0.29
RFC4-214ENST00000494047 TRHP20396 242 aaPredicted RBP16.86■□□□□ 0.29
RFC4-214ENST00000494047 CCNB3Q8WWL7 1395 aa16.85■□□□□ 0.29
RFC4-214ENST00000494047 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
RFC4-214ENST00000494047 UGGT2Q9NYU1 1516 aa16.82■□□□□ 0.28
RFC4-214ENST00000494047 CTTNBP2Q8WZ74 1663 aa16.82■□□□□ 0.28
RFC4-214ENST00000494047 NPM1P06748 294 aaKnown RBP eCLIP16.81■□□□□ 0.28
RFC4-214ENST00000494047 PTPRGP23470 1445 aa16.81■□□□□ 0.28
RFC4-214ENST00000494047 DHX57Q6P158 1386 aaKnown RBP16.8■□□□□ 0.28
RFC4-214ENST00000494047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.78■□□□□ 0.28
RFC4-214ENST00000494047 FYCO1Q9BQS8 1478 aa16.78■□□□□ 0.28
RFC4-214ENST00000494047 DISP1Q96F81 1524 aa16.77■□□□□ 0.27
RFC4-214ENST00000494047 LRRC9Q6ZRR7 1453 aa16.74■□□□□ 0.27
RFC4-214ENST00000494047 ADCY10Q96PN6 1610 aa16.73■□□□□ 0.27
RFC4-214ENST00000494047 KIAA0556O60303 1618 aa16.73■□□□□ 0.27
RFC4-214ENST00000494047 MAPKBP1O60336 1514 aa16.71■□□□□ 0.27
RFC4-214ENST00000494047 NEUROD1Q13562 356 aa16.71■□□□□ 0.27
RFC4-214ENST00000494047 UHRF1BP1LA0JNW5 1464 aa16.7■□□□□ 0.26
RFC4-214ENST00000494047 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
RFC4-214ENST00000494047 TIMELESSQ9UNS1 1208 aa16.7■□□□□ 0.26
RFC4-214ENST00000494047 UACAQ9BZF9 1416 aa16.69■□□□□ 0.26
RFC4-214ENST00000494047 CASKIN1Q8WXD9 1431 aa16.68■□□□□ 0.26
RFC4-214ENST00000494047 ABCC2Q92887 1545 aa16.68■□□□□ 0.26
RFC4-214ENST00000494047 PCF11O94913 1555 aaKnown RBP16.66■□□□□ 0.26
RFC4-214ENST00000494047 KANK4Q5T7N3 995 aaPredicted RBP16.65■□□□□ 0.26
RFC4-214ENST00000494047 ABCC10Q5T3U5 1492 aa16.64■□□□□ 0.25
RFC4-214ENST00000494047 SETD5Q9C0A6 1442 aa16.63■□□□□ 0.25
RFC4-214ENST00000494047 KIF13AQ9H1H9 1805 aa16.62■□□□□ 0.25
RFC4-214ENST00000494047 RANGAP1P46060 587 aaPredicted RBP16.62■□□□□ 0.25
RFC4-214ENST00000494047 MYT1Q01538 1121 aa16.62■□□□□ 0.25
RFC4-214ENST00000494047 GTF3C3Q9Y5Q9 886 aa16.62■□□□□ 0.25
RFC4-214ENST00000494047 PLB1Q6P1J6 1458 aa16.61■□□□□ 0.25
RFC4-214ENST00000494047 KDM5BQ9UGL1 1544 aa16.61■□□□□ 0.25
RFC4-214ENST00000494047 FAM69CQ0P6D2 419 aa16.6■□□□□ 0.25
RFC4-214ENST00000494047 SAMD9Q5K651 1589 aa16.59■□□□□ 0.25
RFC4-214ENST00000494047 DIP2BQ9P265 1576 aa16.57■□□□□ 0.24
RFC4-214ENST00000494047 RAB3GAP2Q9H2M9 1393 aa16.57■□□□□ 0.24
RFC4-214ENST00000494047 ABCA8O94911 1581 aa16.56■□□□□ 0.24
RFC4-214ENST00000494047 ASXL2Q76L83 1435 aa16.55■□□□□ 0.24
RFC4-214ENST00000494047 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
RFC4-214ENST00000494047 ZCCHC11Q5TAX3 1644 aaKnown RBP16.53■□□□□ 0.24
RFC4-214ENST00000494047 EHBP1L1Q8N3D4 1523 aa16.53■□□□□ 0.24
RFC4-214ENST00000494047 MIER1Q8N108 512 aa16.52■□□□□ 0.24
RFC4-214ENST00000494047 GLI2P10070 1586 aa16.52■□□□□ 0.24
RFC4-214ENST00000494047 P3H3Q8IVL6 736 aa16.51■□□□□ 0.23
RFC4-214ENST00000494047 SUPT6HQ7KZ85 1726 aaKnown RBP16.5■□□□□ 0.23
RFC4-214ENST00000494047 PHLDB1Q86UU1 1377 aa16.5■□□□□ 0.23
RFC4-214ENST00000494047 WDR7Q9Y4E6 1490 aa16.47■□□□□ 0.23
RFC4-214ENST00000494047 FGD6Q6ZV73 1430 aa16.47■□□□□ 0.23
RFC4-214ENST00000494047 FHOD3Q2V2M9 1422 aa16.46■□□□□ 0.23
RFC4-214ENST00000494047 EPRSP07814 1512 aaKnown RBP16.46■□□□□ 0.23
RFC4-214ENST00000494047 RAPGEF6Q8TEU7 1601 aa16.46■□□□□ 0.23
RFC4-214ENST00000494047 HECW1Q76N89 1606 aa16.45■□□□□ 0.22
RFC4-214ENST00000494047 AKNAQ7Z591 1439 aa16.44■□□□□ 0.22
RFC4-214ENST00000494047 HFM1A2PYH4 1435 aa16.44■□□□□ 0.22
RFC4-214ENST00000494047 TSPOAP1O95153 1857 aa16.43■□□□□ 0.22
RFC4-214ENST00000494047 MTUS2Q5JR59 1369 aa16.42■□□□□ 0.22
RFC4-214ENST00000494047 ATP10BO94823 1461 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms