RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 KIF27Q86VH2 1401 aa19.64■□□□□ 0.73
CTSA-209ENST00000493522 CUL7Q14999 1698 aa19.61■□□□□ 0.73
CTSA-209ENST00000493522 RUSC2Q8N2Y8 1516 aa19.61■□□□□ 0.73
CTSA-209ENST00000493522 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
CTSA-209ENST00000493522 NPM1P06748 294 aaKnown RBP eCLIP19.53■□□□□ 0.72
CTSA-209ENST00000493522 MAPKBP1O60336 1514 aa19.5■□□□□ 0.71
CTSA-209ENST00000493522 ABCC10Q5T3U5 1492 aa19.49■□□□□ 0.71
CTSA-209ENST00000493522 KIAA0586Q9BVV6 1533 aa19.49■□□□□ 0.71
CTSA-209ENST00000493522 FAM69CQ0P6D2 419 aa19.48■□□□□ 0.71
CTSA-209ENST00000493522 IGF1RP08069 1367 aa19.47■□□□□ 0.71
CTSA-209ENST00000493522 ADCY10Q96PN6 1610 aa19.45■□□□□ 0.7
CTSA-209ENST00000493522 DIP2BQ9P265 1576 aa19.43■□□□□ 0.7
CTSA-209ENST00000493522 CARMIL1Q5VZK9 1371 aa19.39■□□□□ 0.69
CTSA-209ENST00000493522 EEA1Q15075 1411 aa19.38■□□□□ 0.69
CTSA-209ENST00000493522 CTTNBP2Q8WZ74 1663 aa19.36■□□□□ 0.69
CTSA-209ENST00000493522 PTPRGP23470 1445 aa19.34■□□□□ 0.69
CTSA-209ENST00000493522 RAPGEF2Q9Y4G8 1499 aa19.34■□□□□ 0.69
CTSA-209ENST00000493522 CARMIL2Q6F5E8 1435 aa19.34■□□□□ 0.69
CTSA-209ENST00000493522 KDM6BO15054 1643 aa19.33■□□□□ 0.68
CTSA-209ENST00000493522 TNIKQ9UKE5 1360 aa19.31■□□□□ 0.68
CTSA-209ENST00000493522 PRXQ9BXM0 1461 aa19.28■□□□□ 0.68
CTSA-209ENST00000493522 TTBK1Q5TCY1 1321 aaPredicted RBP19.28■□□□□ 0.68
CTSA-209ENST00000493522 FAM9AQ8IZU1 332 aaPredicted RBP19.28■□□□□ 0.68
CTSA-209ENST00000493522 ABCC2Q92887 1545 aa19.28■□□□□ 0.68
CTSA-209ENST00000493522 IQGAP2Q13576 1575 aa19.27■□□□□ 0.68
CTSA-209ENST00000493522 KIF21BO75037 1637 aa19.27■□□□□ 0.68
CTSA-209ENST00000493522 TSPOAP1O95153 1857 aa19.26■□□□□ 0.67
CTSA-209ENST00000493522 CSRNP3Q8WYN3 585 aa19.24■□□□□ 0.67
CTSA-209ENST00000493522 PLB1Q6P1J6 1458 aa19.23■□□□□ 0.67
CTSA-209ENST00000493522 UHRF1BP1LA0JNW5 1464 aa19.22■□□□□ 0.67
CTSA-209ENST00000493522 ASXL2Q76L83 1435 aa19.21■□□□□ 0.67
CTSA-209ENST00000493522 UACAQ9BZF9 1416 aa19.19■□□□□ 0.66
CTSA-209ENST00000493522 DISP1Q96F81 1524 aa19.18■□□□□ 0.66
CTSA-209ENST00000493522 GLI2P10070 1586 aa19.18■□□□□ 0.66
CTSA-209ENST00000493522 KDM4FA0A1W2PPD8 638 aa19.17■□□□□ 0.66
CTSA-209ENST00000493522 UGGT2Q9NYU1 1516 aa19.15■□□□□ 0.66
CTSA-209ENST00000493522 KDM5BQ9UGL1 1544 aa19.12■□□□□ 0.65
CTSA-209ENST00000493522 PPRC1Q5VV67 1664 aaKnown RBP19.11■□□□□ 0.65
CTSA-209ENST00000493522 EPRSP07814 1512 aaKnown RBP19.1■□□□□ 0.65
CTSA-209ENST00000493522 GOLGA3Q08378 1498 aa19.1■□□□□ 0.65
CTSA-209ENST00000493522 KIAA0556O60303 1618 aa19.1■□□□□ 0.65
CTSA-209ENST00000493522 TEX14Q8IWB6 1497 aa19.08■□□□□ 0.64
CTSA-209ENST00000493522 ZCCHC11Q5TAX3 1644 aaKnown RBP19.07■□□□□ 0.64
CTSA-209ENST00000493522 MAP3K4Q9Y6R4 1608 aa19.06■□□□□ 0.64
CTSA-209ENST00000493522 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
CTSA-209ENST00000493522 WDR7Q9Y4E6 1490 aa19.02■□□□□ 0.63
CTSA-209ENST00000493522 ADGRL1O94910 1474 aa19.01■□□□□ 0.63
CTSA-209ENST00000493522 COL17A1Q9UMD9 1497 aaPredicted RBP19.01■□□□□ 0.63
CTSA-209ENST00000493522 SAMD9Q5K651 1589 aa19■□□□□ 0.63
CTSA-209ENST00000493522 UBTFP17480 764 aaKnown RBP18.96■□□□□ 0.63
CTSA-209ENST00000493522 EFCAB5A4FU69 1503 aa18.93■□□□□ 0.62
CTSA-209ENST00000493522 ABCA8O94911 1581 aa18.92■□□□□ 0.62
CTSA-209ENST00000493522 CD109Q6YHK3 1445 aa18.91■□□□□ 0.62
CTSA-209ENST00000493522 MAGI3Q5TCQ9 1506 aa18.9■□□□□ 0.62
CTSA-209ENST00000493522 CFAP43Q8NDM7 1665 aa18.9■□□□□ 0.62
CTSA-209ENST00000493522 RANGAP1P46060 587 aaPredicted RBP18.9■□□□□ 0.62
CTSA-209ENST00000493522 KCNH8Q96L42 1107 aa18.88■□□□□ 0.61
CTSA-209ENST00000493522 FHOD3Q2V2M9 1422 aa18.83■□□□□ 0.61
CTSA-209ENST00000493522 P3H3Q8IVL6 736 aa18.82■□□□□ 0.6
CTSA-209ENST00000493522 HECW2Q9P2P5 1572 aa18.81■□□□□ 0.6
CTSA-209ENST00000493522 ARHGAP35Q9NRY4 1499 aa18.8■□□□□ 0.6
CTSA-209ENST00000493522 RAPGEF6Q8TEU7 1601 aa18.8■□□□□ 0.6
CTSA-209ENST00000493522 ILDR1Q86SU0 546 aaPredicted RBP18.78■□□□□ 0.6
CTSA-209ENST00000493522 ARID3CA6NKF2 412 aa18.77■□□□□ 0.6
CTSA-209ENST00000493522 ATP10BO94823 1461 aa18.76■□□□□ 0.59
CTSA-209ENST00000493522 ARAP3Q8WWN8 1544 aa18.75■□□□□ 0.59
CTSA-209ENST00000493522 CLIP1P30622 1438 aa18.74■□□□□ 0.59
CTSA-209ENST00000493522 PHLDB1Q86UU1 1377 aa18.73■□□□□ 0.59
CTSA-209ENST00000493522 ABCA9Q8IUA7 1624 aa18.72■□□□□ 0.59
CTSA-209ENST00000493522 LOC105371045A0A1W2PR82 267 aa18.7■□□□□ 0.58
CTSA-209ENST00000493522 CEP162Q5TB80 1403 aa18.7■□□□□ 0.58
CTSA-209ENST00000493522 HECW1Q76N89 1606 aa18.7■□□□□ 0.58
CTSA-209ENST00000493522 FMN1Q68DA7 1419 aa18.68■□□□□ 0.58
CTSA-209ENST00000493522 PCF11O94913 1555 aaKnown RBP18.68■□□□□ 0.58
CTSA-209ENST00000493522 NEO1Q92859 1461 aa18.67■□□□□ 0.58
CTSA-209ENST00000493522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.67■□□□□ 0.58
CTSA-209ENST00000493522 HNRNPUL2Q1KMD3 747 aaKnown RBP18.67■□□□□ 0.58
CTSA-209ENST00000493522 LRRIQ1Q96JM4 1722 aa18.66■□□□□ 0.58
CTSA-209ENST00000493522 NUP153P49790 1475 aaKnown RBP18.65■□□□□ 0.58
CTSA-209ENST00000493522 RAPGEF3O95398 923 aa18.62■□□□□ 0.57
CTSA-209ENST00000493522 CDK13Q14004 1512 aaKnown RBP18.59■□□□□ 0.57
CTSA-209ENST00000493522 PTPRMP28827 1452 aa18.58■□□□□ 0.57
CTSA-209ENST00000493522 ADAMTSL3P82987 1691 aa18.58■□□□□ 0.57
CTSA-209ENST00000493522 FYCO1Q9BQS8 1478 aa18.57■□□□□ 0.56
CTSA-209ENST00000493522 FRMPD1Q5SYB0 1578 aa18.56■□□□□ 0.56
CTSA-209ENST00000493522 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
CTSA-209ENST00000493522 CASKIN1Q8WXD9 1431 aa18.56■□□□□ 0.56
CTSA-209ENST00000493522 ARID4BQ4LE39 1312 aaPredicted RBP18.55■□□□□ 0.56
CTSA-209ENST00000493522 ATP1B4Q9UN42 357 aaPredicted RBP18.54■□□□□ 0.56
CTSA-209ENST00000493522 BCORL1Q5H9F3 1711 aa18.53■□□□□ 0.56
CTSA-209ENST00000493522 DENND4BO75064 1496 aaPredicted RBP18.52■□□□□ 0.56
CTSA-209ENST00000493522 CFAP74Q9C0B2 1584 aa18.52■□□□□ 0.56
CTSA-209ENST00000493522 ARHGEF40Q8TER5 1519 aa18.52■□□□□ 0.56
CTSA-209ENST00000493522 FANCAO15360 1455 aa18.52■□□□□ 0.55
CTSA-209ENST00000493522 CCDC18Q5T9S5 1454 aa18.52■□□□□ 0.55
CTSA-209ENST00000493522 AKNAQ7Z591 1439 aa18.5■□□□□ 0.55
CTSA-209ENST00000493522 MADDQ8WXG6 1647 aa18.5■□□□□ 0.55
CTSA-209ENST00000493522 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.49■□□□□ 0.55
CTSA-209ENST00000493522 RICTORQ6R327 1708 aa18.48■□□□□ 0.55
CTSA-209ENST00000493522 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms