RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 RUSC2Q8N2Y8 1516 aa24.93■■□□□ 1.58
VARS-227ENST00000489979 FAM69CQ0P6D2 419 aa24.88■■□□□ 1.57
VARS-227ENST00000489979 ABCC10Q5T3U5 1492 aa24.86■■□□□ 1.57
VARS-227ENST00000489979 NPM1P06748 294 aaKnown RBP eCLIP24.86■■□□□ 1.57
VARS-227ENST00000489979 MAPKBP1O60336 1514 aa24.82■■□□□ 1.56
VARS-227ENST00000489979 ADCY10Q96PN6 1610 aa24.81■■□□□ 1.56
VARS-227ENST00000489979 DIP2BQ9P265 1576 aa24.79■■□□□ 1.56
VARS-227ENST00000489979 KIAA0586Q9BVV6 1533 aa24.76■■□□□ 1.55
VARS-227ENST00000489979 IGF1RP08069 1367 aa24.75■■□□□ 1.55
VARS-227ENST00000489979 KIF27Q86VH2 1401 aa24.7■■□□□ 1.55
VARS-227ENST00000489979 CUL7Q14999 1698 aa24.7■■□□□ 1.54
VARS-227ENST00000489979 TSPOAP1O95153 1857 aa24.68■■□□□ 1.54
VARS-227ENST00000489979 KDM6BO15054 1643 aa24.67■■□□□ 1.54
VARS-227ENST00000489979 PTPRGP23470 1445 aa24.61■■□□□ 1.53
VARS-227ENST00000489979 TTBK1Q5TCY1 1321 aaPredicted RBP24.61■■□□□ 1.53
VARS-227ENST00000489979 KDM4FA0A1W2PPD8 638 aa24.59■■□□□ 1.53
VARS-227ENST00000489979 CARMIL1Q5VZK9 1371 aa24.58■■□□□ 1.53
VARS-227ENST00000489979 TNIKQ9UKE5 1360 aa24.54■■□□□ 1.52
VARS-227ENST00000489979 CARMIL2Q6F5E8 1435 aa24.53■■□□□ 1.52
VARS-227ENST00000489979 ABCC2Q92887 1545 aa24.52■■□□□ 1.52
VARS-227ENST00000489979 IQGAP2Q13576 1575 aa24.48■■□□□ 1.51
VARS-227ENST00000489979 ASXL2Q76L83 1435 aa24.48■■□□□ 1.51
VARS-227ENST00000489979 PLB1Q6P1J6 1458 aa24.45■■□□□ 1.51
VARS-227ENST00000489979 PPRC1Q5VV67 1664 aaKnown RBP24.44■■□□□ 1.5
VARS-227ENST00000489979 GLI2P10070 1586 aa24.44■■□□□ 1.5
VARS-227ENST00000489979 UHRF1BP1LA0JNW5 1464 aa24.43■■□□□ 1.5
VARS-227ENST00000489979 UACAQ9BZF9 1416 aa24.42■■□□□ 1.5
VARS-227ENST00000489979 DISP1Q96F81 1524 aa24.4■■□□□ 1.5
VARS-227ENST00000489979 EPRSP07814 1512 aaKnown RBP24.33■■□□□ 1.49
VARS-227ENST00000489979 KDM5BQ9UGL1 1544 aa24.33■■□□□ 1.49
VARS-227ENST00000489979 UGGT2Q9NYU1 1516 aa24.31■■□□□ 1.48
VARS-227ENST00000489979 COL17A1Q9UMD9 1497 aaPredicted RBP24.31■■□□□ 1.48
VARS-227ENST00000489979 RAPGEF2Q9Y4G8 1499 aa24.31■■□□□ 1.48
VARS-227ENST00000489979 MAP3K4Q9Y6R4 1608 aa24.3■■□□□ 1.48
VARS-227ENST00000489979 ADGRL1O94910 1474 aa24.3■■□□□ 1.48
VARS-227ENST00000489979 ZCCHC11Q5TAX3 1644 aaKnown RBP24.29■■□□□ 1.48
VARS-227ENST00000489979 KIAA0556O60303 1618 aa24.27■■□□□ 1.48
VARS-227ENST00000489979 TEX14Q8IWB6 1497 aa24.25■■□□□ 1.47
VARS-227ENST00000489979 ILDR1Q86SU0 546 aaPredicted RBP24.19■■□□□ 1.46
VARS-227ENST00000489979 WDR7Q9Y4E6 1490 aa24.18■■□□□ 1.46
VARS-227ENST00000489979 CTTNBP2Q8WZ74 1663 aa24.13■■□□□ 1.45
VARS-227ENST00000489979 GOLGA3Q08378 1498 aa24.08■■□□□ 1.45
VARS-227ENST00000489979 KCNH8Q96L42 1107 aa24.08■■□□□ 1.45
VARS-227ENST00000489979 CD109Q6YHK3 1445 aa24.08■■□□□ 1.44
VARS-227ENST00000489979 ABCA8O94911 1581 aa24.08■■□□□ 1.44
VARS-227ENST00000489979 HECW2Q9P2P5 1572 aa24.08■■□□□ 1.44
VARS-227ENST00000489979 CFAP43Q8NDM7 1665 aa24.07■■□□□ 1.44
VARS-227ENST00000489979 MAGI3Q5TCQ9 1506 aa24.06■■□□□ 1.44
VARS-227ENST00000489979 PRXQ9BXM0 1461 aa23.96■■□□□ 1.43
VARS-227ENST00000489979 KIF21BO75037 1637 aa23.92■■□□□ 1.42
VARS-227ENST00000489979 ARID3CA6NKF2 412 aa23.92■■□□□ 1.42
VARS-227ENST00000489979 P3H3Q8IVL6 736 aa23.89■■□□□ 1.41
VARS-227ENST00000489979 ARAP3Q8WWN8 1544 aa23.89■■□□□ 1.41
VARS-227ENST00000489979 ATP10BO94823 1461 aa23.87■■□□□ 1.41
VARS-227ENST00000489979 FAM9AQ8IZU1 332 aaPredicted RBP23.87■■□□□ 1.41
VARS-227ENST00000489979 ABCA9Q8IUA7 1624 aa23.81■■□□□ 1.4
VARS-227ENST00000489979 PHLDB1Q86UU1 1377 aa23.78■■□□□ 1.4
VARS-227ENST00000489979 RAPGEF3O95398 923 aa23.76■■□□□ 1.39
VARS-227ENST00000489979 SAMD9Q5K651 1589 aa23.76■■□□□ 1.39
VARS-227ENST00000489979 RAPGEF6Q8TEU7 1601 aa23.75■■□□□ 1.39
VARS-227ENST00000489979 ADAMTSL3P82987 1691 aa23.74■■□□□ 1.39
VARS-227ENST00000489979 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.73■■□□□ 1.39
VARS-227ENST00000489979 HNRNPUL2Q1KMD3 747 aaKnown RBP23.73■■□□□ 1.39
VARS-227ENST00000489979 PTPRMP28827 1452 aa23.73■■□□□ 1.39
VARS-227ENST00000489979 NEO1Q92859 1461 aa23.73■■□□□ 1.39
VARS-227ENST00000489979 CSRNP3Q8WYN3 585 aa23.71■■□□□ 1.39
VARS-227ENST00000489979 FRMPD1Q5SYB0 1578 aa23.68■■□□□ 1.38
VARS-227ENST00000489979 BCORL1Q5H9F3 1711 aa23.66■■□□□ 1.38
VARS-227ENST00000489979 NUP153P49790 1475 aaKnown RBP23.66■■□□□ 1.38
VARS-227ENST00000489979 ARID4BQ4LE39 1312 aaPredicted RBP23.65■■□□□ 1.38
VARS-227ENST00000489979 RANGAP1P46060 587 aaPredicted RBP23.64■■□□□ 1.37
VARS-227ENST00000489979 FBXO41Q8TF61 875 aa23.63■■□□□ 1.37
VARS-227ENST00000489979 MADDQ8WXG6 1647 aa23.62■■□□□ 1.37
VARS-227ENST00000489979 FHOD3Q2V2M9 1422 aa23.61■■□□□ 1.37
VARS-227ENST00000489979 PLEKHD1A6NEE1 506 aa23.57■■□□□ 1.36
VARS-227ENST00000489979 ARHGEF40Q8TER5 1519 aa23.57■■□□□ 1.36
VARS-227ENST00000489979 PCF11O94913 1555 aaKnown RBP23.57■■□□□ 1.36
VARS-227ENST00000489979 DENND4BO75064 1496 aaPredicted RBP23.56■■□□□ 1.36
VARS-227ENST00000489979 RICTORQ6R327 1708 aa23.56■■□□□ 1.36
VARS-227ENST00000489979 AKNAQ7Z591 1439 aa23.55■■□□□ 1.36
VARS-227ENST00000489979 LMTK3Q96Q04 1460 aa23.54■■□□□ 1.36
VARS-227ENST00000489979 RIMS1Q86UR5 1692 aaKnown RBP23.54■■□□□ 1.36
VARS-227ENST00000489979 FANCAO15360 1455 aa23.52■■□□□ 1.36
VARS-227ENST00000489979 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.52■■□□□ 1.36
VARS-227ENST00000489979 EEA1Q15075 1411 aa23.51■■□□□ 1.35
VARS-227ENST00000489979 CFAP74Q9C0B2 1584 aa23.51■■□□□ 1.35
VARS-227ENST00000489979 TTC37Q6PGP7 1564 aa23.48■■□□□ 1.35
VARS-227ENST00000489979 PLPPR3Q6T4P5 718 aa23.46■■□□□ 1.35
VARS-227ENST00000489979 ZMYM4Q5VZL5 1548 aa23.45■■□□□ 1.34
VARS-227ENST00000489979 EFCAB5A4FU69 1503 aa23.44■■□□□ 1.34
VARS-227ENST00000489979 POGZQ7Z3K3 1410 aa23.44■■□□□ 1.34
VARS-227ENST00000489979 YEATS2Q9ULM3 1422 aa23.44■■□□□ 1.34
VARS-227ENST00000489979 SIGLEC1Q9BZZ2 1709 aa23.44■■□□□ 1.34
VARS-227ENST00000489979 ZFYVE16Q7Z3T8 1539 aa23.43■■□□□ 1.34
VARS-227ENST00000489979 HSPA2P54652 639 aa23.43■■□□□ 1.34
VARS-227ENST00000489979 CDK13Q14004 1512 aaKnown RBP23.41■■□□□ 1.34
VARS-227ENST00000489979 MAGI2Q86UL8 1455 aa23.39■■□□□ 1.34
VARS-227ENST00000489979 MLECQ14165 292 aa23.39■■□□□ 1.33
VARS-227ENST00000489979 HECW1Q76N89 1606 aa23.39■■□□□ 1.33
VARS-227ENST00000489979 SCAPERQ9BY12 1400 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms