RNA–Protein interactions for RNA: ENST00000488386.5

CDHR3-213, Transcript of cadherin related family member 3, humanhuman

TSL 3

Gene CDHR3, Length 540 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-213ENST00000488386 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
CDHR3-213ENST00000488386 SPOCK2Q92563 424 aa11.59□□□□□ -0.55
CDHR3-213ENST00000488386 NUBP1P53384 320 aa11.58□□□□□ -0.56
CDHR3-213ENST00000488386 POTEHQ6S545 545 aa11.54□□□□□ -0.56
CDHR3-213ENST00000488386 RASEFQ8IZ41 740 aa11.54□□□□□ -0.56
CDHR3-213ENST00000488386 NPM1P06748 294 aaKnown RBP eCLIP11.53□□□□□ -0.56
CDHR3-213ENST00000488386 RTN4Q9NQC3 1192 aaKnown RBP11.51□□□□□ -0.57
CDHR3-213ENST00000488386 C19orf67A6NJJ6 358 aa11.43□□□□□ -0.58
CDHR3-213ENST00000488386 PKD2Q13563 968 aa11.43□□□□□ -0.58
CDHR3-213ENST00000488386 AMER1Q5JTC6 1135 aaPredicted RBP11.43□□□□□ -0.58
CDHR3-213ENST00000488386 TSPYL2Q9H2G4 693 aaPredicted RBP11.43□□□□□ -0.58
CDHR3-213ENST00000488386 CD44P16070 742 aaKnown RBP11.42□□□□□ -0.58
CDHR3-213ENST00000488386 FAM212AQ96EL1 285 aa11.42□□□□□ -0.58
CDHR3-213ENST00000488386 CIZ1Q9ULV3 898 aaPredicted RBP11.41□□□□□ -0.58
CDHR3-213ENST00000488386 DCAF8Q5TAQ9 597 aa11.4□□□□□ -0.58
CDHR3-213ENST00000488386 EVX2Q03828 476 aa11.39□□□□□ -0.59
CDHR3-213ENST00000488386 HAX1O00165 279 aa11.37□□□□□ -0.59
CDHR3-213ENST00000488386 GSE1Q14687 1217 aa11.36□□□□□ -0.59
CDHR3-213ENST00000488386 ZRANB1Q9UGI0 708 aa11.36□□□□□ -0.59
CDHR3-213ENST00000488386 CCDC61Q9Y6R9 512 aa11.36□□□□□ -0.59
CDHR3-213ENST00000488386 SMARCA4P51532 1647 aa11.35□□□□□ -0.59
CDHR3-213ENST00000488386 PAK3O75914 559 aaPredicted RBP11.32□□□□□ -0.6
CDHR3-213ENST00000488386 ATAD2BQ9ULI0 1458 aa11.32□□□□□ -0.6
CDHR3-213ENST00000488386 PYGBP11216 843 aa11.31□□□□□ -0.6
CDHR3-213ENST00000488386 PHF12Q96QT6 1004 aa11.31□□□□□ -0.6
CDHR3-213ENST00000488386 ECM2O94769 699 aaPredicted RBP11.29□□□□□ -0.6
CDHR3-213ENST00000488386 NCAPD3P42695 1498 aa11.28□□□□□ -0.6
CDHR3-213ENST00000488386 ZNF579Q8NAF0 562 aaKnown RBP11.27□□□□□ -0.61
CDHR3-213ENST00000488386 BAZ1AQ9NRL2 1556 aaPredicted RBP11.27□□□□□ -0.61
CDHR3-213ENST00000488386 MROH2BQ7Z745 1585 aa11.26□□□□□ -0.61
CDHR3-213ENST00000488386 RNF25Q96BH1 459 aaPredicted RBP11.25□□□□□ -0.61
CDHR3-213ENST00000488386 SMARCA2P51531 1590 aa11.24□□□□□ -0.61
CDHR3-213ENST00000488386 RGL2O15211 777 aa11.24□□□□□ -0.61
CDHR3-213ENST00000488386 TRIM41Q8WV44 630 aa11.24□□□□□ -0.61
CDHR3-213ENST00000488386 KIF12Q96FN5 646 aa11.24□□□□□ -0.61
CDHR3-213ENST00000488386 CHRM1P11229 460 aaPredicted RBP11.22□□□□□ -0.61
CDHR3-213ENST00000488386 HMGXB3Q12766 1538 aa11.22□□□□□ -0.61
CDHR3-213ENST00000488386 BAZ1BQ9UIG0 1483 aaKnown RBP11.21□□□□□ -0.61
CDHR3-213ENST00000488386 MAP3K13O43283 966 aa11.21□□□□□ -0.61
CDHR3-213ENST00000488386 NESP48681 1621 aa11.19□□□□□ -0.62
CDHR3-213ENST00000488386 PEG3Q9GZU2 1588 aa11.17□□□□□ -0.62
CDHR3-213ENST00000488386 MS4A3Q96HJ5 214 aa11.17□□□□□ -0.62
CDHR3-213ENST00000488386 WIZO95785 1651 aa11.17□□□□□ -0.62
CDHR3-213ENST00000488386 IFNL1Q8IU54 200 aa11.16□□□□□ -0.62
CDHR3-213ENST00000488386 PCDHB8Q9UN66 801 aa11.16□□□□□ -0.62
CDHR3-213ENST00000488386 PCDHB13Q9Y5F0 798 aa11.16□□□□□ -0.62
CDHR3-213ENST00000488386 GALR2O43603 387 aaPredicted RBP11.14□□□□□ -0.63
CDHR3-213ENST00000488386 ERCC6Q03468 1493 aa11.13□□□□□ -0.63
CDHR3-213ENST00000488386 TRPC6Q9Y210 931 aa11.13□□□□□ -0.63
CDHR3-213ENST00000488386 RIOK3O14730 519 aaKnown RBP11.12□□□□□ -0.63
CDHR3-213ENST00000488386 GABBR2O75899 941 aa11.11□□□□□ -0.63
CDHR3-213ENST00000488386 SP7Q8TDD2 431 aaPredicted RBP11.11□□□□□ -0.63
CDHR3-213ENST00000488386 SGIP1Q9BQI5 828 aa11.1□□□□□ -0.63
CDHR3-213ENST00000488386 ZNF467Q7Z7K2 595 aaPredicted RBP11.09□□□□□ -0.63
CDHR3-213ENST00000488386 RSF1Q96T23 1441 aaPredicted RBP11.04□□□□□ -0.64
CDHR3-213ENST00000488386 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.04□□□□□ -0.64
CDHR3-213ENST00000488386 VGFO15240 615 aaPredicted RBP11.04□□□□□ -0.64
CDHR3-213ENST00000488386 ZFP91Q96JP5 570 aaPredicted RBP11.04□□□□□ -0.64
CDHR3-213ENST00000488386 KIF21AQ7Z4S6 1674 aa11.04□□□□□ -0.64
CDHR3-213ENST00000488386 PDAP1Q13442 181 aaKnown RBP11.02□□□□□ -0.65
CDHR3-213ENST00000488386 LAMC3Q9Y6N6 1575 aa11.02□□□□□ -0.65
CDHR3-213ENST00000488386 CUX2O14529 1486 aa11.01□□□□□ -0.65
CDHR3-213ENST00000488386 PSEN1P49768 467 aa11.01□□□□□ -0.65
CDHR3-213ENST00000488386 THOC2Q8NI27 1593 aaKnown RBP11□□□□□ -0.65
CDHR3-213ENST00000488386 CLCN6P51797 869 aa11□□□□□ -0.65
CDHR3-213ENST00000488386 BMP2KQ9NSY1 1161 aaPredicted RBP10.99□□□□□ -0.65
CDHR3-213ENST00000488386 CHGAP10645 457 aaKnown RBP10.97□□□□□ -0.65
CDHR3-213ENST00000488386 TMEM106CQ9BVX2 250 aa10.97□□□□□ -0.65
CDHR3-213ENST00000488386 CADPSQ9ULU8 1353 aa10.97□□□□□ -0.65
CDHR3-213ENST00000488386 TOP2AP11388 1531 aaKnown RBP10.97□□□□□ -0.65
CDHR3-213ENST00000488386 TTLL13PA6NNM8 815 aa10.96□□□□□ -0.65
CDHR3-213ENST00000488386 STK25O00506 426 aa10.96□□□□□ -0.65
CDHR3-213ENST00000488386 TIE1P35590 1138 aa10.96□□□□□ -0.65
CDHR3-213ENST00000488386 HS6ST3Q8IZP7 471 aa10.96□□□□□ -0.65
CDHR3-213ENST00000488386 BCL11BQ9C0K0 894 aaPredicted RBP10.96□□□□□ -0.65
CDHR3-213ENST00000488386 PDS5BQ9NTI5 1447 aa10.94□□□□□ -0.66
CDHR3-213ENST00000488386 POTEIP0CG38 1075 aa10.93□□□□□ -0.66
CDHR3-213ENST00000488386 TAOK2Q9UL54 1235 aa10.93□□□□□ -0.66
CDHR3-213ENST00000488386 STK24Q9Y6E0 443 aa10.93□□□□□ -0.66
CDHR3-213ENST00000488386 ATMINO43313 823 aaPredicted RBP10.92□□□□□ -0.66
CDHR3-213ENST00000488386 ATN1P54259 1190 aaPredicted RBP10.91□□□□□ -0.66
CDHR3-213ENST00000488386 ASTLQ6HA08 431 aaPredicted RBP10.91□□□□□ -0.66
CDHR3-213ENST00000488386 CABP2Q9NPB3 220 aa10.9□□□□□ -0.66
CDHR3-213ENST00000488386 DNAJC5Q9H3Z4 198 aa10.89□□□□□ -0.67
CDHR3-213ENST00000488386 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
CDHR3-213ENST00000488386 DCBLD2Q96PD2 775 aa10.88□□□□□ -0.67
CDHR3-213ENST00000488386 TRIM35Q9UPQ4 493 aa10.88□□□□□ -0.67
CDHR3-213ENST00000488386 FANCD2Q9BXW9 1451 aa10.87□□□□□ -0.67
CDHR3-213ENST00000488386 MRC2Q9UBG0 1479 aa10.87□□□□□ -0.67
CDHR3-213ENST00000488386 NKX1-1Q15270 411 aaPredicted RBP10.87□□□□□ -0.67
CDHR3-213ENST00000488386 CCDC88BA6NC98 1476 aa10.87□□□□□ -0.67
CDHR3-213ENST00000488386 CFTRP13569 1480 aa10.87□□□□□ -0.67
CDHR3-213ENST00000488386 CEP164Q9UPV0 1460 aa10.86□□□□□ -0.67
CDHR3-213ENST00000488386 EFCAB3Q8N7B9 438 aa10.85□□□□□ -0.67
CDHR3-213ENST00000488386 WDR62O43379 1518 aa10.84□□□□□ -0.67
CDHR3-213ENST00000488386 BBXQ8WY36 941 aaPredicted RBP10.81□□□□□ -0.68
CDHR3-213ENST00000488386 PRDM2Q13029 1718 aa10.81□□□□□ -0.68
CDHR3-213ENST00000488386 URB2Q14146 1524 aaKnown RBP10.8□□□□□ -0.68
CDHR3-213ENST00000488386 MFRPQ9BY79 579 aa10.78□□□□□ -0.68
CDHR3-213ENST00000488386 GOLGA2Q08379 1002 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms