RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 ZNF608Q9ULD9 1512 aaPredicted RBP31.17■■■□□ 2.58
HPS3-206ENST00000486530 PBRM1Q86U86 1689 aa31.11■■■□□ 2.57
HPS3-206ENST00000486530 GRIN2BQ13224 1484 aa31.11■■■□□ 2.57
HPS3-206ENST00000486530 EFCAB5A4FU69 1503 aa31.06■■■□□ 2.56
HPS3-206ENST00000486530 FHAD1B1AJZ9 1412 aa31.05■■■□□ 2.56
HPS3-206ENST00000486530 ADAMTS12P58397 1594 aa30.99■■■□□ 2.55
HPS3-206ENST00000486530 EIF4G3O43432 1585 aaKnown RBP30.98■■■□□ 2.55
HPS3-206ENST00000486530 MAP3K1Q13233 1512 aa30.98■■■□□ 2.55
HPS3-206ENST00000486530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.93■■■□□ 2.54
HPS3-206ENST00000486530 TIAM1Q13009 1591 aa30.91■■■□□ 2.54
HPS3-206ENST00000486530 CCER1Q8TC90 406 aaPredicted RBP30.91■■■□□ 2.54
HPS3-206ENST00000486530 SNAPC4Q5SXM2 1469 aa30.89■■■□□ 2.54
HPS3-206ENST00000486530 KANK4Q5T7N3 995 aaPredicted RBP30.89■■■□□ 2.53
HPS3-206ENST00000486530 PCF11O94913 1555 aaKnown RBP30.88■■■□□ 2.53
HPS3-206ENST00000486530 CFAP43Q8NDM7 1665 aa30.87■■■□□ 2.53
HPS3-206ENST00000486530 SAMD9Q5K651 1589 aa30.85■■■□□ 2.53
HPS3-206ENST00000486530 FHOD3Q2V2M9 1422 aa30.83■■■□□ 2.53
HPS3-206ENST00000486530 MAGI1Q96QZ7 1491 aaPredicted RBP30.81■■■□□ 2.52
HPS3-206ENST00000486530 FYCO1Q9BQS8 1478 aa30.81■■■□□ 2.52
HPS3-206ENST00000486530 P3H3Q8IVL6 736 aa30.8■■■□□ 2.52
HPS3-206ENST00000486530 RRBP1Q9P2E9 1410 aaKnown RBP30.79■■■□□ 2.52
HPS3-206ENST00000486530 HNRNPUL2Q1KMD3 747 aaKnown RBP30.75■■■□□ 2.51
HPS3-206ENST00000486530 FMN1Q68DA7 1419 aa30.75■■■□□ 2.51
HPS3-206ENST00000486530 CASKIN1Q8WXD9 1431 aa30.75■■■□□ 2.51
HPS3-206ENST00000486530 LRRC9Q6ZRR7 1453 aa30.74■■■□□ 2.51
HPS3-206ENST00000486530 GRIN2AQ12879 1464 aa30.73■■■□□ 2.51
HPS3-206ENST00000486530 SYNJ2O15056 1496 aa30.71■■■□□ 2.51
HPS3-206ENST00000486530 CHMP7Q8WUX9 453 aaPredicted RBP30.67■■■□□ 2.5
HPS3-206ENST00000486530 IQGAP2Q13576 1575 aa30.67■■■□□ 2.5
HPS3-206ENST00000486530 KIAA0586Q9BVV6 1533 aa30.63■■■□□ 2.49
HPS3-206ENST00000486530 CCNB3Q8WWL7 1395 aa30.63■■■□□ 2.49
HPS3-206ENST00000486530 FBLN2P98095 1184 aa30.57■■■□□ 2.48
HPS3-206ENST00000486530 UGGT2Q9NYU1 1516 aa30.57■■■□□ 2.48
HPS3-206ENST00000486530 CEP170Q5SW79 1584 aa30.53■■■□□ 2.48
HPS3-206ENST00000486530 LRRIQ1Q96JM4 1722 aa30.52■■■□□ 2.48
HPS3-206ENST00000486530 NUP160Q12769 1436 aa30.52■■■□□ 2.48
HPS3-206ENST00000486530 ATP1B4Q9UN42 357 aaPredicted RBP30.52■■■□□ 2.48
HPS3-206ENST00000486530 PHLDB1Q86UU1 1377 aa30.47■■■□□ 2.47
HPS3-206ENST00000486530 DISP1Q96F81 1524 aa30.43■■■□□ 2.46
HPS3-206ENST00000486530 HECW1Q76N89 1606 aa30.41■■■□□ 2.46
HPS3-206ENST00000486530 CCDC18Q5T9S5 1454 aa30.39■■■□□ 2.46
HPS3-206ENST00000486530 KIAA0556O60303 1618 aa30.36■■■□□ 2.45
HPS3-206ENST00000486530 JPH4Q96JJ6 628 aa30.36■■■□□ 2.45
HPS3-206ENST00000486530 EHBP1L1Q8N3D4 1523 aa30.35■■■□□ 2.45
HPS3-206ENST00000486530 MTUS2Q5JR59 1369 aa30.34■■■□□ 2.45
HPS3-206ENST00000486530 SUPT6HQ7KZ85 1726 aaKnown RBP30.32■■■□□ 2.44
HPS3-206ENST00000486530 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.31■■■□□ 2.44
HPS3-206ENST00000486530 CLSPNQ9HAW4 1339 aa30.29■■■□□ 2.44
HPS3-206ENST00000486530 CHD1O14646 1710 aa30.28■■■□□ 2.44
HPS3-206ENST00000486530 DHX57Q6P158 1386 aaKnown RBP30.27■■■□□ 2.44
HPS3-206ENST00000486530 FGD6Q6ZV73 1430 aa30.23■■■□□ 2.43
HPS3-206ENST00000486530 EPRSP07814 1512 aaKnown RBP30.23■■■□□ 2.43
HPS3-206ENST00000486530 ITGAEP38570 1179 aa30.22■■■□□ 2.43
HPS3-206ENST00000486530 NCOA2Q15596 1464 aa30.22■■■□□ 2.43
HPS3-206ENST00000486530 CARMIL2Q6F5E8 1435 aa30.21■■■□□ 2.43
HPS3-206ENST00000486530 FAM50AQ14320 339 aaKnown RBP30.21■■■□□ 2.43
HPS3-206ENST00000486530 ARHGEF11O15085 1522 aa30.19■■■□□ 2.42
HPS3-206ENST00000486530 MAGI3Q5TCQ9 1506 aa30.19■■■□□ 2.42
HPS3-206ENST00000486530 MYOM3Q5VTT5 1437 aa30.16■■■□□ 2.42
HPS3-206ENST00000486530 RAPGEF6Q8TEU7 1601 aa30.14■■■□□ 2.42
HPS3-206ENST00000486530 SETD5Q9C0A6 1442 aa30.14■■■□□ 2.42
HPS3-206ENST00000486530 RAB3GAP2Q9H2M9 1393 aa30.14■■■□□ 2.42
HPS3-206ENST00000486530 CDK13Q14004 1512 aaKnown RBP30.13■■■□□ 2.41
HPS3-206ENST00000486530 PRG4Q92954 1404 aaPredicted RBP30.09■■■□□ 2.41
HPS3-206ENST00000486530 NUP153P49790 1475 aaKnown RBP30.07■■■□□ 2.4
HPS3-206ENST00000486530 PTPN23Q9H3S7 1636 aa30.06■■■□□ 2.4
HPS3-206ENST00000486530 SHROOM2Q13796 1616 aa30.04■■■□□ 2.4
HPS3-206ENST00000486530 PLB1Q6P1J6 1458 aa30.04■■■□□ 2.4
HPS3-206ENST00000486530 ARID3CA6NKF2 412 aa30.02■■■□□ 2.4
HPS3-206ENST00000486530 TCOF1Q13428 1488 aaKnown RBP29.98■■■□□ 2.39
HPS3-206ENST00000486530 CLASP1Q7Z460 1538 aa29.97■■■□□ 2.39
HPS3-206ENST00000486530 ABCA8O94911 1581 aa29.95■■■□□ 2.38
HPS3-206ENST00000486530 PTPRGP23470 1445 aa29.94■■■□□ 2.38
HPS3-206ENST00000486530 MIA2Q96PC5 1412 aa29.93■■■□□ 2.38
HPS3-206ENST00000486530 MAPKBP1O60336 1514 aa29.93■■■□□ 2.38
HPS3-206ENST00000486530 ZNF316A6NFI3 1004 aaPredicted RBP29.91■■■□□ 2.38
HPS3-206ENST00000486530 HFM1A2PYH4 1435 aa29.89■■■□□ 2.38
HPS3-206ENST00000486530 PTPRKQ15262 1439 aa29.89■■■□□ 2.37
HPS3-206ENST00000486530 CDK11AQ9UQ88 783 aaPredicted RBP29.87■■■□□ 2.37
HPS3-206ENST00000486530 ERCC6L2Q5T890 1561 aa29.86■■■□□ 2.37
HPS3-206ENST00000486530 ADCY10Q96PN6 1610 aa29.82■■■□□ 2.37
HPS3-206ENST00000486530 TROQ12816 1431 aaPredicted RBP29.81■■■□□ 2.36
HPS3-206ENST00000486530 ATP10BO94823 1461 aa29.81■■■□□ 2.36
HPS3-206ENST00000486530 DIEXFQ68CQ4 756 aaKnown RBP29.8■■■□□ 2.36
HPS3-206ENST00000486530 OSCARQ8IYS5 282 aa29.8■■■□□ 2.36
HPS3-206ENST00000486530 GCC2Q8IWJ2 1684 aa29.79■■■□□ 2.36
HPS3-206ENST00000486530 NAIPQ13075 1403 aa29.78■■■□□ 2.36
HPS3-206ENST00000486530 ITSN2Q9NZM3 1697 aa29.77■■■□□ 2.36
HPS3-206ENST00000486530 AKNAQ7Z591 1439 aa29.76■■■□□ 2.36
HPS3-206ENST00000486530 UACAQ9BZF9 1416 aa29.76■■■□□ 2.35
HPS3-206ENST00000486530 DNMT1P26358 1616 aaKnown RBP29.7■■■□□ 2.34
HPS3-206ENST00000486530 PLEKHD1A6NEE1 506 aa29.69■■■□□ 2.34
HPS3-206ENST00000486530 KIF14Q15058 1648 aa29.69■■■□□ 2.34
HPS3-206ENST00000486530 ABCC2Q92887 1545 aa29.63■■■□□ 2.33
HPS3-206ENST00000486530 DAPK1P53355 1430 aa29.62■■■□□ 2.33
HPS3-206ENST00000486530 GPATCH8Q9UKJ3 1502 aaKnown RBP29.59■■■□□ 2.33
HPS3-206ENST00000486530 ROCK1Q13464 1354 aa29.58■■■□□ 2.33
HPS3-206ENST00000486530 CAMSAP2Q08AD1 1489 aa29.57■■■□□ 2.32
HPS3-206ENST00000486530 TIMELESSQ9UNS1 1208 aa29.57■■■□□ 2.32
HPS3-206ENST00000486530 UHRF1BP1LA0JNW5 1464 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms