RNA–Protein interactions for RNA: ENST00000486255.1

GABRE-209, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

TSL 1 (best)

Gene GABRE, Length 6,176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-209ENST00000486255 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.7□□□□□ -0.54
GABRE-209ENST00000486255 SCAF1Q9H7N4 1312 aaKnown RBP11.7□□□□□ -0.54
GABRE-209ENST00000486255 NCLP19338 710 aaKnown RBP11.7□□□□□ -0.54
GABRE-209ENST00000486255 FAM9BQ8IZU0 186 aa11.7□□□□□ -0.54
GABRE-209ENST00000486255 BECN1Q14457 450 aa11.68□□□□□ -0.54
GABRE-209ENST00000486255 DNTTIP2Q5QJE6 756 aaKnown RBP11.67□□□□□ -0.54
GABRE-209ENST00000486255 PTMAP06454 111 aaKnown RBP11.67□□□□□ -0.54
GABRE-209ENST00000486255 BICRAQ9NZM4 1560 aa11.67□□□□□ -0.54
GABRE-209ENST00000486255 RTN4Q9NQC3 1192 aaKnown RBP11.66□□□□□ -0.54
GABRE-209ENST00000486255 CEP164Q9UPV0 1460 aa11.66□□□□□ -0.54
GABRE-209ENST00000486255 ERICH6BQ5W0A0 696 aa11.66□□□□□ -0.54
GABRE-209ENST00000486255 GOLGA6L22H0YM25 854 aa11.64□□□□□ -0.55
GABRE-209ENST00000486255 KIF27Q86VH2 1401 aa11.64□□□□□ -0.55
GABRE-209ENST00000486255 NCAPD3P42695 1498 aa11.64□□□□□ -0.55
GABRE-209ENST00000486255 SALL2Q9Y467 1007 aaPredicted RBP11.64□□□□□ -0.55
GABRE-209ENST00000486255 EIF4G1Q04637 1599 aaKnown RBP11.64□□□□□ -0.55
GABRE-209ENST00000486255 TNIKQ9UKE5 1360 aa11.63□□□□□ -0.55
GABRE-209ENST00000486255 UNC13AQ9UPW8 1703 aa11.62□□□□□ -0.55
GABRE-209ENST00000486255 ABCC8Q09428 1581 aa11.62□□□□□ -0.55
GABRE-209ENST00000486255 IRX6P78412 446 aaPredicted RBP11.61□□□□□ -0.55
GABRE-209ENST00000486255 AMER1Q5JTC6 1135 aaPredicted RBP11.61□□□□□ -0.55
GABRE-209ENST00000486255 ARID3CA6NKF2 412 aa11.61□□□□□ -0.55
GABRE-209ENST00000486255 HMGXB3Q12766 1538 aa11.6□□□□□ -0.55
GABRE-209ENST00000486255 DDX10Q13206 875 aaKnown RBP11.59□□□□□ -0.55
GABRE-209ENST00000486255 SENP3Q9H4L4 574 aaPredicted RBP11.59□□□□□ -0.55
GABRE-209ENST00000486255 MYH16Q9H6N6 1097 aa11.58□□□□□ -0.56
GABRE-209ENST00000486255 PPM1GO15355 546 aaPredicted RBP11.57□□□□□ -0.56
GABRE-209ENST00000486255 CEP162Q5TB80 1403 aa11.57□□□□□ -0.56
GABRE-209ENST00000486255 TONSLQ96HA7 1378 aa11.57□□□□□ -0.56
GABRE-209ENST00000486255 CADPSQ9ULU8 1353 aa11.57□□□□□ -0.56
GABRE-209ENST00000486255 PEG3Q9GZU2 1588 aa11.57□□□□□ -0.56
GABRE-209ENST00000486255 CLIP1P30622 1438 aa11.56□□□□□ -0.56
GABRE-209ENST00000486255 STAG3Q9UJ98 1225 aa11.56□□□□□ -0.56
GABRE-209ENST00000486255 TMC1Q8TDI8 760 aa11.55□□□□□ -0.56
GABRE-209ENST00000486255 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
GABRE-209ENST00000486255 A0A0G2JS52 829 aa11.55□□□□□ -0.56
GABRE-209ENST00000486255 ZRSR1Q15695 479 aaKnown RBP11.55□□□□□ -0.56
GABRE-209ENST00000486255 PDS5BQ9NTI5 1447 aa11.54□□□□□ -0.56
GABRE-209ENST00000486255 SOGA1O94964 1423 aa11.53□□□□□ -0.56
GABRE-209ENST00000486255 ARID4BQ4LE39 1312 aaPredicted RBP11.52□□□□□ -0.57
GABRE-209ENST00000486255 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
GABRE-209ENST00000486255 GOLGA6L6A8MZA4 724 aa11.5□□□□□ -0.57
GABRE-209ENST00000486255 LAS1LQ9Y4W2 734 aaKnown RBP11.5□□□□□ -0.57
GABRE-209ENST00000486255 NOP58Q9Y2X3 529 aaKnown RBP11.49□□□□□ -0.57
GABRE-209ENST00000486255 MRS2Q9HD23 443 aa11.49□□□□□ -0.57
GABRE-209ENST00000486255 CUX2O14529 1486 aa11.47□□□□□ -0.57
GABRE-209ENST00000486255 CASC1Q6TDU7 716 aa11.46□□□□□ -0.57
GABRE-209ENST00000486255 MIER1Q8N108 512 aa11.46□□□□□ -0.57
GABRE-209ENST00000486255 CHAF1AQ13111 956 aaPredicted RBP11.46□□□□□ -0.58
GABRE-209ENST00000486255 PLCB2Q00722 1185 aa11.45□□□□□ -0.58
GABRE-209ENST00000486255 ERCC6Q03468 1493 aa11.45□□□□□ -0.58
GABRE-209ENST00000486255 DEKP35659 375 aaKnown RBP11.44□□□□□ -0.58
GABRE-209ENST00000486255 ZNF777Q9ULD5 760 aaPredicted RBP11.44□□□□□ -0.58
GABRE-209ENST00000486255 PLEKHG5O94827 1062 aa11.44□□□□□ -0.58
GABRE-209ENST00000486255 MSNP26038 577 aaKnown RBP11.44□□□□□ -0.58
GABRE-209ENST00000486255 L1TD1Q5T7N2 865 aaKnown RBP11.43□□□□□ -0.58
GABRE-209ENST00000486255 CFTRP13569 1480 aa11.43□□□□□ -0.58
GABRE-209ENST00000486255 CC2D2AQ9P2K1 1620 aa11.43□□□□□ -0.58
GABRE-209ENST00000486255 FANCD2Q9BXW9 1451 aa11.42□□□□□ -0.58
GABRE-209ENST00000486255 CARMIL1Q5VZK9 1371 aa11.41□□□□□ -0.58
GABRE-209ENST00000486255 CHGAP10645 457 aaKnown RBP11.41□□□□□ -0.58
GABRE-209ENST00000486255 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
GABRE-209ENST00000486255 C14orf37Q86TY3 774 aa11.4□□□□□ -0.59
GABRE-209ENST00000486255 TULP1O00294 542 aaPredicted RBP11.39□□□□□ -0.59
GABRE-209ENST00000486255 HSP90AB1P08238 724 aaKnown RBP11.39□□□□□ -0.59
GABRE-209ENST00000486255 NRDCO43847 1150 aa11.39□□□□□ -0.59
GABRE-209ENST00000486255 TNNT3P45378 269 aaPredicted RBP11.37□□□□□ -0.59
GABRE-209ENST00000486255 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.36□□□□□ -0.59
GABRE-209ENST00000486255 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
GABRE-209ENST00000486255 FHAD1B1AJZ9 1412 aa11.35□□□□□ -0.59
GABRE-209ENST00000486255 CHMP7Q8WUX9 453 aaPredicted RBP11.35□□□□□ -0.59
GABRE-209ENST00000486255 HAP1P54257 671 aaPredicted RBP11.35□□□□□ -0.59
GABRE-209ENST00000486255 VPS8Q8N3P4 1428 aa11.35□□□□□ -0.59
GABRE-209ENST00000486255 RAPGEF2Q9Y4G8 1499 aa11.34□□□□□ -0.59
GABRE-209ENST00000486255 SUPT16HQ9Y5B9 1047 aaKnown RBP11.34□□□□□ -0.59
GABRE-209ENST00000486255 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
GABRE-209ENST00000486255 DRC7Q8IY82 874 aa11.33□□□□□ -0.6
GABRE-209ENST00000486255 PPP4R2Q9NY27 417 aa11.33□□□□□ -0.6
GABRE-209ENST00000486255 KIF21BO75037 1637 aa11.33□□□□□ -0.6
GABRE-209ENST00000486255 ARID3AQ99856 593 aa11.32□□□□□ -0.6
GABRE-209ENST00000486255 ZBTB7CA1YPR0 619 aa11.31□□□□□ -0.6
GABRE-209ENST00000486255 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
GABRE-209ENST00000486255 FTSJ3Q8IY81 847 aaKnown RBP11.3□□□□□ -0.6
GABRE-209ENST00000486255 HSCBQ8IWL3 235 aa11.29□□□□□ -0.6
GABRE-209ENST00000486255 RUSC2Q8N2Y8 1516 aa11.29□□□□□ -0.6
GABRE-209ENST00000486255 ERICH3Q5RHP9 1530 aa11.28□□□□□ -0.6
GABRE-209ENST00000486255 HIRIP3Q9BW71 556 aaPredicted RBP11.28□□□□□ -0.6
GABRE-209ENST00000486255 KDM2AQ9Y2K7 1162 aa11.28□□□□□ -0.6
GABRE-209ENST00000486255 MTUS2Q5JR59 1369 aa11.28□□□□□ -0.6
GABRE-209ENST00000486255 RGS3P49796 1198 aa11.28□□□□□ -0.6
GABRE-209ENST00000486255 TAOK2Q9UL54 1235 aa11.27□□□□□ -0.6
GABRE-209ENST00000486255 LAMC3Q9Y6N6 1575 aa11.26□□□□□ -0.61
GABRE-209ENST00000486255 GOLGA6L4A6NEF3 574 aa11.26□□□□□ -0.61
GABRE-209ENST00000486255 EIF4G2P78344 907 aaKnown RBP eCLIP11.25□□□□□ -0.61
GABRE-209ENST00000486255 CUX1P39880 1505 aa11.25□□□□□ -0.61
GABRE-209ENST00000486255 PTMSP20962 102 aa11.24□□□□□ -0.61
GABRE-209ENST00000486255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.24□□□□□ -0.619e-8■■□□□ 13.4
GABRE-209ENST00000486255 DNMBPQ6XZF7 1577 aa11.23□□□□□ -0.61
GABRE-209ENST00000486255 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
GABRE-209ENST00000486255 PNNQ9H307 717 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms