RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 IGF1RP08069 1367 aa13.71□□□□□ -0.22
SF3A1-208ENST00000485618 ILDR1Q86SU0 546 aaPredicted RBP13.7□□□□□ -0.22
SF3A1-208ENST00000485618 RUSC2Q8N2Y8 1516 aa13.69□□□□□ -0.22
SF3A1-208ENST00000485618 EEA1Q15075 1411 aa13.69□□□□□ -0.22
SF3A1-208ENST00000485618 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
SF3A1-208ENST00000485618 KIF13AQ9H1H9 1805 aa13.66□□□□□ -0.22
SF3A1-208ENST00000485618 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
SF3A1-208ENST00000485618 CUL7Q14999 1698 aa13.63□□□□□ -0.23
SF3A1-208ENST00000485618 JPH4Q96JJ6 628 aa13.63□□□□□ -0.23
SF3A1-208ENST00000485618 MAPKBP1O60336 1514 aa13.59□□□□□ -0.23
SF3A1-208ENST00000485618 ADCY10Q96PN6 1610 aa13.58□□□□□ -0.24
SF3A1-208ENST00000485618 FAM9AQ8IZU1 332 aaPredicted RBP13.58□□□□□ -0.24
SF3A1-208ENST00000485618 ABCC10Q5T3U5 1492 aa13.58□□□□□ -0.24
SF3A1-208ENST00000485618 RAPGEF2Q9Y4G8 1499 aa13.58□□□□□ -0.24
SF3A1-208ENST00000485618 DIP2BQ9P265 1576 aa13.58□□□□□ -0.24
SF3A1-208ENST00000485618 NPM1P06748 294 aaKnown RBP eCLIP13.56□□□□□ -0.24
SF3A1-208ENST00000485618 KIAA0586Q9BVV6 1533 aa13.55□□□□□ -0.24
SF3A1-208ENST00000485618 FAM69CQ0P6D2 419 aa13.55□□□□□ -0.24
SF3A1-208ENST00000485618 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
SF3A1-208ENST00000485618 KDM6BO15054 1643 aa13.5□□□□□ -0.25
SF3A1-208ENST00000485618 TSPOAP1O95153 1857 aa13.46□□□□□ -0.25
SF3A1-208ENST00000485618 UBTFP17480 764 aaKnown RBP13.46□□□□□ -0.25
SF3A1-208ENST00000485618 PTPRGP23470 1445 aa13.46□□□□□ -0.26
SF3A1-208ENST00000485618 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
SF3A1-208ENST00000485618 CARMIL2Q6F5E8 1435 aa13.45□□□□□ -0.26
SF3A1-208ENST00000485618 IQGAP2Q13576 1575 aa13.44□□□□□ -0.26
SF3A1-208ENST00000485618 ABCC2Q92887 1545 aa13.43□□□□□ -0.26
SF3A1-208ENST00000485618 TNIKQ9UKE5 1360 aa13.43□□□□□ -0.26
SF3A1-208ENST00000485618 KIF21BO75037 1637 aa13.41□□□□□ -0.26
SF3A1-208ENST00000485618 GOLGA3Q08378 1498 aa13.41□□□□□ -0.26
SF3A1-208ENST00000485618 ASXL2Q76L83 1435 aa13.39□□□□□ -0.27
SF3A1-208ENST00000485618 PLB1Q6P1J6 1458 aa13.38□□□□□ -0.27
SF3A1-208ENST00000485618 EHMT2Q96KQ7 1210 aa13.37□□□□□ -0.27
SF3A1-208ENST00000485618 GLI2P10070 1586 aa13.37□□□□□ -0.27
SF3A1-208ENST00000485618 UHRF1BP1LA0JNW5 1464 aa13.36□□□□□ -0.27
SF3A1-208ENST00000485618 DISP1Q96F81 1524 aa13.36□□□□□ -0.27
SF3A1-208ENST00000485618 PPRC1Q5VV67 1664 aaKnown RBP13.36□□□□□ -0.27
SF3A1-208ENST00000485618 UACAQ9BZF9 1416 aa13.36□□□□□ -0.27
SF3A1-208ENST00000485618 KDM4FA0A1W2PPD8 638 aa13.35□□□□□ -0.27
SF3A1-208ENST00000485618 CTTNBP2Q8WZ74 1663 aa13.34□□□□□ -0.27
SF3A1-208ENST00000485618 KIAA0556O60303 1618 aa13.33□□□□□ -0.28
SF3A1-208ENST00000485618 UGGT2Q9NYU1 1516 aa13.33□□□□□ -0.28
SF3A1-208ENST00000485618 ZCCHC11Q5TAX3 1644 aaKnown RBP13.31□□□□□ -0.28
SF3A1-208ENST00000485618 EPRSP07814 1512 aaKnown RBP13.31□□□□□ -0.28
SF3A1-208ENST00000485618 KDM5BQ9UGL1 1544 aa13.31□□□□□ -0.28
SF3A1-208ENST00000485618 RANGAP1P46060 587 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-208ENST00000485618 MAP3K4Q9Y6R4 1608 aa13.3□□□□□ -0.28
SF3A1-208ENST00000485618 ADGRL1O94910 1474 aa13.28□□□□□ -0.28
SF3A1-208ENST00000485618 TEX14Q8IWB6 1497 aa13.28□□□□□ -0.28
SF3A1-208ENST00000485618 P3H3Q8IVL6 736 aa13.26□□□□□ -0.29
SF3A1-208ENST00000485618 WDR7Q9Y4E6 1490 aa13.25□□□□□ -0.29
SF3A1-208ENST00000485618 EFCAB5A4FU69 1503 aa13.24□□□□□ -0.29
SF3A1-208ENST00000485618 COL17A1Q9UMD9 1497 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-208ENST00000485618 LOC105371045A0A1W2PR82 267 aa13.21□□□□□ -0.29
SF3A1-208ENST00000485618 ABCA8O94911 1581 aa13.2□□□□□ -0.3
SF3A1-208ENST00000485618 FMN1Q68DA7 1419 aa13.18□□□□□ -0.3
SF3A1-208ENST00000485618 SAMD9Q5K651 1589 aa13.18□□□□□ -0.3
SF3A1-208ENST00000485618 CFAP43Q8NDM7 1665 aa13.18□□□□□ -0.3
SF3A1-208ENST00000485618 CLIP1P30622 1438 aa13.17□□□□□ -0.3
SF3A1-208ENST00000485618 CD109Q6YHK3 1445 aa13.16□□□□□ -0.3
SF3A1-208ENST00000485618 MAGI3Q5TCQ9 1506 aa13.16□□□□□ -0.3
SF3A1-208ENST00000485618 HECW2Q9P2P5 1572 aa13.15□□□□□ -0.3
SF3A1-208ENST00000485618 FHOD3Q2V2M9 1422 aa13.14□□□□□ -0.31
SF3A1-208ENST00000485618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-208ENST00000485618 HNRNPUL2Q1KMD3 747 aaKnown RBP13.13□□□□□ -0.31
SF3A1-208ENST00000485618 KCNH8Q96L42 1107 aa13.13□□□□□ -0.31
SF3A1-208ENST00000485618 ATP1B4Q9UN42 357 aaPredicted RBP13.13□□□□□ -0.31
SF3A1-208ENST00000485618 ARHGAP35Q9NRY4 1499 aa13.12□□□□□ -0.31
SF3A1-208ENST00000485618 CEP162Q5TB80 1403 aa13.12□□□□□ -0.31
SF3A1-208ENST00000485618 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-208ENST00000485618 ARID3CA6NKF2 412 aa13.09□□□□□ -0.31
SF3A1-208ENST00000485618 PLEKHD1A6NEE1 506 aa13.07□□□□□ -0.32
SF3A1-208ENST00000485618 RAPGEF6Q8TEU7 1601 aa13.06□□□□□ -0.32
SF3A1-208ENST00000485618 ATP10BO94823 1461 aa13.05□□□□□ -0.32
SF3A1-208ENST00000485618 ARAP3Q8WWN8 1544 aa13.05□□□□□ -0.32
SF3A1-208ENST00000485618 FBXO41Q8TF61 875 aa13.05□□□□□ -0.32
SF3A1-208ENST00000485618 ABCA9Q8IUA7 1624 aa13.05□□□□□ -0.32
SF3A1-208ENST00000485618 CASKIN1Q8WXD9 1431 aa13.04□□□□□ -0.32
SF3A1-208ENST00000485618 APLP2Q06481 763 aa13.03□□□□□ -0.32
SF3A1-208ENST00000485618 HECW1Q76N89 1606 aa13□□□□□ -0.33
SF3A1-208ENST00000485618 NUP153P49790 1475 aaKnown RBP13□□□□□ -0.33
SF3A1-208ENST00000485618 CCDC18Q5T9S5 1454 aa13□□□□□ -0.33
SF3A1-208ENST00000485618 LMTK3Q96Q04 1460 aa13□□□□□ -0.33
SF3A1-208ENST00000485618 FYCO1Q9BQS8 1478 aa13□□□□□ -0.33
SF3A1-208ENST00000485618 PHLDB1Q86UU1 1377 aa12.99□□□□□ -0.33
SF3A1-208ENST00000485618 NEO1Q92859 1461 aa12.98□□□□□ -0.33
SF3A1-208ENST00000485618 FRMPD1Q5SYB0 1578 aa12.98□□□□□ -0.33
SF3A1-208ENST00000485618 VPS8Q8N3P4 1428 aa12.96□□□□□ -0.33
SF3A1-208ENST00000485618 ADAMTSL3P82987 1691 aa12.96□□□□□ -0.33
SF3A1-208ENST00000485618 RAPGEF3O95398 923 aa12.96□□□□□ -0.33
SF3A1-208ENST00000485618 PTPRMP28827 1452 aa12.95□□□□□ -0.34
SF3A1-208ENST00000485618 ARHGEF40Q8TER5 1519 aa12.94□□□□□ -0.34
SF3A1-208ENST00000485618 BCORL1Q5H9F3 1711 aa12.93□□□□□ -0.34
SF3A1-208ENST00000485618 MADDQ8WXG6 1647 aa12.93□□□□□ -0.34
SF3A1-208ENST00000485618 ARID4BQ4LE39 1312 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-208ENST00000485618 CFAP74Q9C0B2 1584 aa12.92□□□□□ -0.34
SF3A1-208ENST00000485618 PCF11O94913 1555 aaKnown RBP12.91□□□□□ -0.34
SF3A1-208ENST00000485618 MTUS2Q5JR59 1369 aa12.91□□□□□ -0.34
SF3A1-208ENST00000485618 DENND4BO75064 1496 aaPredicted RBP12.91□□□□□ -0.34
SF3A1-208ENST00000485618 TROQ12816 1431 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms