RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 ARHGEF11O15085 1522 aa9.11□□□□□ -0.95
CCDC39-205ENST00000485055 PLCB2Q00722 1185 aa9.11□□□□□ -0.95
CCDC39-205ENST00000485055 HOMEZQ8IX15 550 aa9.1□□□□□ -0.95
CCDC39-205ENST00000485055 RAD54L2Q9Y4B4 1467 aa9.1□□□□□ -0.95
CCDC39-205ENST00000485055 AQRO60306 1485 aaKnown RBP eCLIP9.1□□□□□ -0.95
CCDC39-205ENST00000485055 GAPVD1Q14C86 1478 aa9.1□□□□□ -0.95
CCDC39-205ENST00000485055 WRNQ14191 1432 aaPredicted RBP eCLIP9.09□□□□□ -0.95
CCDC39-205ENST00000485055 NUP160Q12769 1436 aa9.09□□□□□ -0.95
CCDC39-205ENST00000485055 SNAPC4Q5SXM2 1469 aa9.09□□□□□ -0.96
CCDC39-205ENST00000485055 CUL7Q14999 1698 aa9.07□□□□□ -0.96
CCDC39-205ENST00000485055 HAP1P54257 671 aaPredicted RBP9.06□□□□□ -0.96
CCDC39-205ENST00000485055 RANGAP1P46060 587 aaPredicted RBP9.05□□□□□ -0.96
CCDC39-205ENST00000485055 PELP1Q8IZL8 1130 aaKnown RBP9.05□□□□□ -0.96
CCDC39-205ENST00000485055 FHAD1B1AJZ9 1412 aa9.04□□□□□ -0.96
CCDC39-205ENST00000485055 KLHL34Q8N239 644 aa9.04□□□□□ -0.96
CCDC39-205ENST00000485055 GRIN2AQ12879 1464 aa9.04□□□□□ -0.96
CCDC39-205ENST00000485055 TTBK1Q5TCY1 1321 aaPredicted RBP9.03□□□□□ -0.96
CCDC39-205ENST00000485055 ARAP1Q96P48 1450 aa9.03□□□□□ -0.96
CCDC39-205ENST00000485055 CEP170Q5SW79 1584 aa9.02□□□□□ -0.97
CCDC39-205ENST00000485055 ERICH6Q7L0X2 663 aa9.02□□□□□ -0.97
CCDC39-205ENST00000485055 PODXL2Q9NZ53 605 aa9□□□□□ -0.97
CCDC39-205ENST00000485055 GTF3C3Q9Y5Q9 886 aa9□□□□□ -0.97
CCDC39-205ENST00000485055 TDRD9Q8NDG6 1382 aaKnown RBP9□□□□□ -0.97
CCDC39-205ENST00000485055 RUSC2Q8N2Y8 1516 aa9□□□□□ -0.97
CCDC39-205ENST00000485055 KIAA0586Q9BVV6 1533 aa8.92□□□□□ -0.98
CCDC39-205ENST00000485055 KIF27Q86VH2 1401 aa8.91□□□□□ -0.98
CCDC39-205ENST00000485055 IGF1RP08069 1367 aa8.9□□□□□ -0.98
CCDC39-205ENST00000485055 MAPKBP1O60336 1514 aa8.89□□□□□ -0.99
CCDC39-205ENST00000485055 CHMP7Q8WUX9 453 aaPredicted RBP8.89□□□□□ -0.99
CCDC39-205ENST00000485055 MYT1Q01538 1121 aa8.88□□□□□ -0.99
CCDC39-205ENST00000485055 UGGT2Q9NYU1 1516 aa8.87□□□□□ -0.99
CCDC39-205ENST00000485055 UHRF1BP1LA0JNW5 1464 aa8.87□□□□□ -0.99
CCDC39-205ENST00000485055 KIF13AQ9H1H9 1805 aa8.87□□□□□ -0.99
CCDC39-205ENST00000485055 CTTNBP2Q8WZ74 1663 aa8.86□□□□□ -0.99
CCDC39-205ENST00000485055 FKBP8Q14318 412 aa8.86□□□□□ -0.99
CCDC39-205ENST00000485055 ERCC6L2Q5T890 1561 aa8.86□□□□□ -0.99
CCDC39-205ENST00000485055 SUPT5HO00267 1087 aaKnown RBP8.84□□□□□ -0.99
CCDC39-205ENST00000485055 GLI2P10070 1586 aa8.84□□□□□ -0.99
CCDC39-205ENST00000485055 IQGAP2Q13576 1575 aa8.83□□□□□ -1
CCDC39-205ENST00000485055 ADCY10Q96PN6 1610 aa8.82□□□□□ -1
CCDC39-205ENST00000485055 PRXQ9BXM0 1461 aa8.8□□□□□ -1
CCDC39-205ENST00000485055 NPM3O75607 178 aaKnown RBP8.8□□□□□ -1
CCDC39-205ENST00000485055 RAPGEF2Q9Y4G8 1499 aa8.8□□□□□ -1
CCDC39-205ENST00000485055 PRG4Q92954 1404 aaPredicted RBP8.8□□□□□ -1
CCDC39-205ENST00000485055 TMEM132AQ24JP5 1023 aa8.79□□□□□ -1
CCDC39-205ENST00000485055 KDM2AQ9Y2K7 1162 aa8.79□□□□□ -1
CCDC39-205ENST00000485055 EEA1Q15075 1411 aa8.79□□□□□ -1
CCDC39-205ENST00000485055 CARMIL1Q5VZK9 1371 aa8.78□□□□□ -1
CCDC39-205ENST00000485055 DIP2BQ9P265 1576 aa8.78□□□□□ -1
CCDC39-205ENST00000485055 DISP1Q96F81 1524 aa8.78□□□□□ -1
CCDC39-205ENST00000485055 KIAA0556O60303 1618 aa8.77□□□□□ -1.01
CCDC39-205ENST00000485055 ABCC10Q5T3U5 1492 aa8.77□□□□□ -1.01
CCDC39-205ENST00000485055 TRIM41Q8WV44 630 aa8.76□□□□□ -1.01
CCDC39-205ENST00000485055 JPH4Q96JJ6 628 aa8.76□□□□□ -1.01
CCDC39-205ENST00000485055 KDM5BQ9UGL1 1544 aa8.75□□□□□ -1.01
CCDC39-205ENST00000485055 SAMD9Q5K651 1589 aa8.75□□□□□ -1.01
CCDC39-205ENST00000485055 NPM2Q86SE8 214 aaKnown RBP8.75□□□□□ -1.01
CCDC39-205ENST00000485055 ABCC2Q92887 1545 aa8.75□□□□□ -1.01
CCDC39-205ENST00000485055 VSIG10Q8N0Z9 540 aa8.75□□□□□ -1.01
CCDC39-205ENST00000485055 TNIKQ9UKE5 1360 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 CARMIL2Q6F5E8 1435 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 FBLN2P98095 1184 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 CYB5RLQ6IPT4 315 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 GOLGA3Q08378 1498 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 ABCA8O94911 1581 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 MAP3K4Q9Y6R4 1608 aa8.74□□□□□ -1.01
CCDC39-205ENST00000485055 KIF21BO75037 1637 aa8.73□□□□□ -1.01
CCDC39-205ENST00000485055 PPRC1Q5VV67 1664 aaKnown RBP8.73□□□□□ -1.01
CCDC39-205ENST00000485055 C14orf37Q86TY3 774 aa8.73□□□□□ -1.01
CCDC39-205ENST00000485055 EIF5BO60841 1220 aaKnown RBP8.71□□□□□ -1.02
CCDC39-205ENST00000485055 PLB1Q6P1J6 1458 aa8.71□□□□□ -1.02
CCDC39-205ENST00000485055 CFAP43Q8NDM7 1665 aa8.7□□□□□ -1.02
CCDC39-205ENST00000485055 ZCCHC11Q5TAX3 1644 aaKnown RBP8.7□□□□□ -1.02
CCDC39-205ENST00000485055 UACAQ9BZF9 1416 aa8.68□□□□□ -1.02
CCDC39-205ENST00000485055 PTPRGP23470 1445 aa8.67□□□□□ -1.02
CCDC39-205ENST00000485055 EFCAB5A4FU69 1503 aa8.67□□□□□ -1.02
CCDC39-205ENST00000485055 TRIM26Q12899 539 aaPredicted RBP8.66□□□□□ -1.02
CCDC39-205ENST00000485055 MAGI3Q5TCQ9 1506 aa8.64□□□□□ -1.03
CCDC39-205ENST00000485055 PPP6R1Q9UPN7 881 aa8.63□□□□□ -1.03
CCDC39-205ENST00000485055 EPRSP07814 1512 aaKnown RBP8.63□□□□□ -1.03
CCDC39-205ENST00000485055 ABCA9Q8IUA7 1624 aa8.62□□□□□ -1.03
CCDC39-205ENST00000485055 PHLDB1Q86UU1 1377 aa8.61□□□□□ -1.03
CCDC39-205ENST00000485055 RAPGEF6Q8TEU7 1601 aa8.61□□□□□ -1.03
CCDC39-205ENST00000485055 ASXL2Q76L83 1435 aa8.6□□□□□ -1.03
CCDC39-205ENST00000485055 TEX14Q8IWB6 1497 aa8.6□□□□□ -1.03
CCDC39-205ENST00000485055 WDR7Q9Y4E6 1490 aa8.6□□□□□ -1.03
CCDC39-205ENST00000485055 KDM6BO15054 1643 aa8.59□□□□□ -1.03
CCDC39-205ENST00000485055 UBTFP17480 764 aaKnown RBP8.59□□□□□ -1.04
CCDC39-205ENST00000485055 ARAP3Q8WWN8 1544 aa8.58□□□□□ -1.04
CCDC39-205ENST00000485055 PPP4R3CPQ6ZMV5 832 aa8.57□□□□□ -1.04
CCDC39-205ENST00000485055 CFAP74Q9C0B2 1584 aa8.57□□□□□ -1.04
CCDC39-205ENST00000485055 NPM1P06748 294 aaKnown RBP eCLIP8.55□□□□□ -1.04
CCDC39-205ENST00000485055 HRCP23327 699 aa8.55□□□□□ -1.04
CCDC39-205ENST00000485055 ATP10BO94823 1461 aa8.53□□□□□ -1.04
CCDC39-205ENST00000485055 NEO1Q92859 1461 aa8.53□□□□□ -1.04
CCDC39-205ENST00000485055 PLEKHG5O94827 1062 aa8.52□□□□□ -1.05
CCDC39-205ENST00000485055 TRHP20396 242 aaPredicted RBP8.51□□□□□ -1.05
CCDC39-205ENST00000485055 NUP153P49790 1475 aaKnown RBP8.51□□□□□ -1.05
CCDC39-205ENST00000485055 TSPOAP1O95153 1857 aa8.51□□□□□ -1.05
CCDC39-205ENST00000485055 ZMYM4Q5VZL5 1548 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms