RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 RUSC2Q8N2Y8 1516 aa22.07■■□□□ 1.12
HDAC1-209ENST00000484305 CARMIL1Q5VZK9 1371 aa22.06■■□□□ 1.12
HDAC1-209ENST00000484305 JPH4Q96JJ6 628 aa22.04■■□□□ 1.12
HDAC1-209ENST00000484305 PRG4Q92954 1404 aaPredicted RBP22.02■■□□□ 1.12
HDAC1-209ENST00000484305 KIAA0586Q9BVV6 1533 aa21.99■■□□□ 1.11
HDAC1-209ENST00000484305 TRHP20396 242 aaPredicted RBP21.91■■□□□ 1.1
HDAC1-209ENST00000484305 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
HDAC1-209ENST00000484305 IQGAP2Q13576 1575 aa21.84■■□□□ 1.09
HDAC1-209ENST00000484305 PRXQ9BXM0 1461 aa21.77■■□□□ 1.08
HDAC1-209ENST00000484305 CARMIL2Q6F5E8 1435 aa21.75■■□□□ 1.07
HDAC1-209ENST00000484305 CTTNBP2Q8WZ74 1663 aa21.74■■□□□ 1.07
HDAC1-209ENST00000484305 ADCY10Q96PN6 1610 aa21.73■■□□□ 1.07
HDAC1-209ENST00000484305 DISP1Q96F81 1524 aa21.72■■□□□ 1.07
HDAC1-209ENST00000484305 PTPRGP23470 1445 aa21.72■■□□□ 1.07
HDAC1-209ENST00000484305 UGGT2Q9NYU1 1516 aa21.71■■□□□ 1.07
HDAC1-209ENST00000484305 CSRNP3Q8WYN3 585 aa21.71■■□□□ 1.07
HDAC1-209ENST00000484305 TTBK1Q5TCY1 1321 aaPredicted RBP21.71■■□□□ 1.07
HDAC1-209ENST00000484305 TNIKQ9UKE5 1360 aa21.71■■□□□ 1.07
HDAC1-209ENST00000484305 EEA1Q15075 1411 aa21.65■■□□□ 1.06
HDAC1-209ENST00000484305 NPM1P06748 294 aaKnown RBP eCLIP21.65■■□□□ 1.06
HDAC1-209ENST00000484305 KIAA0556O60303 1618 aa21.65■■□□□ 1.06
HDAC1-209ENST00000484305 KIF13AQ9H1H9 1805 aa21.62■■□□□ 1.05
HDAC1-209ENST00000484305 FAM9AQ8IZU1 332 aaPredicted RBP21.62■■□□□ 1.05
HDAC1-209ENST00000484305 MAPKBP1O60336 1514 aa21.6■■□□□ 1.05
HDAC1-209ENST00000484305 UACAQ9BZF9 1416 aa21.56■■□□□ 1.04
HDAC1-209ENST00000484305 ABCC2Q92887 1545 aa21.55■■□□□ 1.04
HDAC1-209ENST00000484305 UHRF1BP1LA0JNW5 1464 aa21.55■■□□□ 1.04
HDAC1-209ENST00000484305 GOLGA3Q08378 1498 aa21.55■■□□□ 1.04
HDAC1-209ENST00000484305 ABCC10Q5T3U5 1492 aa21.54■■□□□ 1.04
HDAC1-209ENST00000484305 FAM69CQ0P6D2 419 aa21.51■■□□□ 1.03
HDAC1-209ENST00000484305 DIP2BQ9P265 1576 aa21.51■■□□□ 1.03
HDAC1-209ENST00000484305 KIF21BO75037 1637 aa21.48■■□□□ 1.03
HDAC1-209ENST00000484305 PLB1Q6P1J6 1458 aa21.46■■□□□ 1.03
HDAC1-209ENST00000484305 KDM5BQ9UGL1 1544 aa21.45■■□□□ 1.02
HDAC1-209ENST00000484305 P3H3Q8IVL6 736 aa21.45■■□□□ 1.02
HDAC1-209ENST00000484305 ASXL2Q76L83 1435 aa21.45■■□□□ 1.02
HDAC1-209ENST00000484305 ZCCHC11Q5TAX3 1644 aaKnown RBP21.44■■□□□ 1.02
HDAC1-209ENST00000484305 ABCA8O94911 1581 aa21.43■■□□□ 1.02
HDAC1-209ENST00000484305 SAMD9Q5K651 1589 aa21.43■■□□□ 1.02
HDAC1-209ENST00000484305 RANGAP1P46060 587 aaPredicted RBP21.4■■□□□ 1.02
HDAC1-209ENST00000484305 TSPOAP1O95153 1857 aa21.39■■□□□ 1.02
HDAC1-209ENST00000484305 EHMT2Q96KQ7 1210 aa21.38■■□□□ 1.01
HDAC1-209ENST00000484305 GLI2P10070 1586 aa21.34■■□□□ 1.01
HDAC1-209ENST00000484305 EPRSP07814 1512 aaKnown RBP21.32■■□□□ 1
HDAC1-209ENST00000484305 UBTFP17480 764 aaKnown RBP21.31■■□□□ 1
HDAC1-209ENST00000484305 FHOD3Q2V2M9 1422 aa21.29■■□□□ 1
HDAC1-209ENST00000484305 WDR7Q9Y4E6 1490 aa21.29■■□□□ 1
HDAC1-209ENST00000484305 PPRC1Q5VV67 1664 aaKnown RBP21.28■■□□□ 1
HDAC1-209ENST00000484305 RAPGEF6Q8TEU7 1601 aa21.27■■□□□ 1
HDAC1-209ENST00000484305 ARID3CA6NKF2 412 aa21.27■■□□□ 1
HDAC1-209ENST00000484305 EFCAB5A4FU69 1503 aa21.26■□□□□ 0.99
HDAC1-209ENST00000484305 MAP3K4Q9Y6R4 1608 aa21.25■□□□□ 0.99
HDAC1-209ENST00000484305 ATP10BO94823 1461 aa21.25■□□□□ 0.99
HDAC1-209ENST00000484305 KDM6BO15054 1643 aa21.22■□□□□ 0.99
HDAC1-209ENST00000484305 KCNH8Q96L42 1107 aa21.21■□□□□ 0.99
HDAC1-209ENST00000484305 NUP153P49790 1475 aaKnown RBP21.2■□□□□ 0.98
HDAC1-209ENST00000484305 ARHGAP35Q9NRY4 1499 aa21.16■□□□□ 0.98
HDAC1-209ENST00000484305 CFAP43Q8NDM7 1665 aa21.15■□□□□ 0.98
HDAC1-209ENST00000484305 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.14■□□□□ 0.97
HDAC1-209ENST00000484305 HNRNPUL2Q1KMD3 747 aaKnown RBP21.14■□□□□ 0.97
HDAC1-209ENST00000484305 TEX14Q8IWB6 1497 aa21.13■□□□□ 0.97
HDAC1-209ENST00000484305 CD109Q6YHK3 1445 aa21.12■□□□□ 0.97
HDAC1-209ENST00000484305 COL17A1Q9UMD9 1497 aaPredicted RBP21.08■□□□□ 0.97
HDAC1-209ENST00000484305 MAGI3Q5TCQ9 1506 aa21.08■□□□□ 0.96
HDAC1-209ENST00000484305 FMN1Q68DA7 1419 aa21.07■□□□□ 0.96
HDAC1-209ENST00000484305 ABCA9Q8IUA7 1624 aa21.07■□□□□ 0.96
HDAC1-209ENST00000484305 CDK13Q14004 1512 aaKnown RBP21.04■□□□□ 0.96
HDAC1-209ENST00000484305 PLEKHD1A6NEE1 506 aa21.03■□□□□ 0.96
HDAC1-209ENST00000484305 ATP1B4Q9UN42 357 aaPredicted RBP21.02■□□□□ 0.96
HDAC1-209ENST00000484305 HECW1Q76N89 1606 aa21.01■□□□□ 0.95
HDAC1-209ENST00000484305 LRRIQ1Q96JM4 1722 aa20.96■□□□□ 0.95
HDAC1-209ENST00000484305 CLIP1P30622 1438 aa20.95■□□□□ 0.94
HDAC1-209ENST00000484305 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.94■□□□□ 0.94
HDAC1-209ENST00000484305 ARAP3Q8WWN8 1544 aa20.92■□□□□ 0.94
HDAC1-209ENST00000484305 PCF11O94913 1555 aaKnown RBP20.92■□□□□ 0.94
HDAC1-209ENST00000484305 TTC37Q6PGP7 1564 aa20.91■□□□□ 0.94
HDAC1-209ENST00000484305 CASKIN1Q8WXD9 1431 aa20.89■□□□□ 0.94
HDAC1-209ENST00000484305 NEO1Q92859 1461 aa20.88■□□□□ 0.93
HDAC1-209ENST00000484305 PHLDB1Q86UU1 1377 aa20.88■□□□□ 0.93
HDAC1-209ENST00000484305 CDK11AQ9UQ88 783 aaPredicted RBP20.87■□□□□ 0.93
HDAC1-209ENST00000484305 KDM4FA0A1W2PPD8 638 aa20.85■□□□□ 0.93
HDAC1-209ENST00000484305 FYCO1Q9BQS8 1478 aa20.83■□□□□ 0.93
HDAC1-209ENST00000484305 KIF14Q15058 1648 aa20.83■□□□□ 0.93
HDAC1-209ENST00000484305 TROQ12816 1431 aaPredicted RBP20.83■□□□□ 0.93
HDAC1-209ENST00000484305 FANCAO15360 1455 aa20.82■□□□□ 0.92
HDAC1-209ENST00000484305 CCDC18Q5T9S5 1454 aa20.82■□□□□ 0.92
HDAC1-209ENST00000484305 RAPGEF3O95398 923 aa20.82■□□□□ 0.92
HDAC1-209ENST00000484305 CEP162Q5TB80 1403 aa20.81■□□□□ 0.92
HDAC1-209ENST00000484305 LOC105371045A0A1W2PR82 267 aa20.81■□□□□ 0.92
HDAC1-209ENST00000484305 CFAP74Q9C0B2 1584 aa20.8■□□□□ 0.92
HDAC1-209ENST00000484305 AKNAQ7Z591 1439 aa20.8■□□□□ 0.92
HDAC1-209ENST00000484305 PLCH2O75038 1416 aa20.79■□□□□ 0.92
HDAC1-209ENST00000484305 MYO5CQ9NQX4 1742 aa20.79■□□□□ 0.92
HDAC1-209ENST00000484305 FRMPD1Q5SYB0 1578 aa20.79■□□□□ 0.92
HDAC1-209ENST00000484305 ADGRL1O94910 1474 aa20.76■□□□□ 0.91
HDAC1-209ENST00000484305 RICTORQ6R327 1708 aa20.75■□□□□ 0.91
HDAC1-209ENST00000484305 DENND4BO75064 1496 aaPredicted RBP20.75■□□□□ 0.91
HDAC1-209ENST00000484305 EFCAB2Q5VUJ9 269 aa20.7■□□□□ 0.9
HDAC1-209ENST00000484305 CDC42BPBQ9Y5S2 1711 aa20.7■□□□□ 0.9
HDAC1-209ENST00000484305 SCAPERQ9BY12 1400 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms