RNA–Protein interactions for RNA: ENST00000480468.1

SIK3-210, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 2,237 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-210ENST00000480468 PRXQ9BXM0 1461 aa14.85□□□□□ -0.03
SIK3-210ENST00000480468 PEG3Q9GZU2 1588 aa14.84□□□□□ -0.03
SIK3-210ENST00000480468 SETD5Q9C0A6 1442 aa14.82□□□□□ -0.04
SIK3-210ENST00000480468 PPP4R2Q9NY27 417 aa14.8□□□□□ -0.04
SIK3-210ENST00000480468 TOP2BQ02880 1626 aa14.8□□□□□ -0.04
SIK3-210ENST00000480468 MAP3K1Q13233 1512 aa14.79□□□□□ -0.04
SIK3-210ENST00000480468 NOP58Q9Y2X3 529 aaKnown RBP14.76□□□□□ -0.05
SIK3-210ENST00000480468 BIVM-ERCC5R4GMW8 1640 aa14.75□□□□□ -0.05
SIK3-210ENST00000480468 RANGAP1P46060 587 aaPredicted RBP14.74□□□□□ -0.05
SIK3-210ENST00000480468 SIN3AQ96ST3 1273 aa14.71□□□□□ -0.05
SIK3-210ENST00000480468 HNRNPUQ00839 825 aaKnown RBP eCLIP14.7□□□□□ -0.06
SIK3-210ENST00000480468 ANO8Q9HCE9 1232 aaPredicted RBP14.7□□□□□ -0.06
SIK3-210ENST00000480468 ARHGAP35Q9NRY4 1499 aa14.7□□□□□ -0.06
SIK3-210ENST00000480468 TIAM1Q13009 1591 aa14.7□□□□□ -0.06
SIK3-210ENST00000480468 UNC13AQ9UPW8 1703 aa14.67□□□□□ -0.06
SIK3-210ENST00000480468 IRX6P78412 446 aaPredicted RBP14.66□□□□□ -0.06
SIK3-210ENST00000480468 FHAD1B1AJZ9 1412 aa14.63□□□□□ -0.07
SIK3-210ENST00000480468 PAK3O75914 559 aaPredicted RBP14.62□□□□□ -0.07
SIK3-210ENST00000480468 LRRC9Q6ZRR7 1453 aa14.62□□□□□ -0.07
SIK3-210ENST00000480468 NBR1Q14596 966 aa14.61□□□□□ -0.07
SIK3-210ENST00000480468 RTL5Q5HYW3 569 aaPredicted RBP14.61□□□□□ -0.07
SIK3-210ENST00000480468 HIRIP3Q9BW71 556 aaPredicted RBP14.61□□□□□ -0.07
SIK3-210ENST00000480468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.61□□□□□ -0.07
SIK3-210ENST00000480468 SALL2Q9Y467 1007 aaPredicted RBP14.6□□□□□ -0.07
SIK3-210ENST00000480468 IPO9Q96P70 1041 aaKnown RBP14.6□□□□□ -0.07
SIK3-210ENST00000480468 KIF27Q86VH2 1401 aa14.59□□□□□ -0.07
SIK3-210ENST00000480468 PHLDB1Q86UU1 1377 aa14.59□□□□□ -0.07
SIK3-210ENST00000480468 TONSLQ96HA7 1378 aa14.59□□□□□ -0.07
SIK3-210ENST00000480468 ANP32AP39687 249 aaKnown RBP14.57□□□□□ -0.08
SIK3-210ENST00000480468 B4GALNT3Q6L9W6 998 aa14.57□□□□□ -0.08
SIK3-210ENST00000480468 ZBED9Q6R2W3 1325 aa14.57□□□□□ -0.08
SIK3-210ENST00000480468 CFAP43Q8NDM7 1665 aa14.56□□□□□ -0.08
SIK3-210ENST00000480468 NCOA2Q15596 1464 aa14.56□□□□□ -0.08
SIK3-210ENST00000480468 WASHC2AQ641Q2 1341 aa14.56□□□□□ -0.08
SIK3-210ENST00000480468 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
SIK3-210ENST00000480468 ATAD2BQ9ULI0 1458 aa14.55□□□□□ -0.08
SIK3-210ENST00000480468 UBE2Q2Q8WVN8 375 aa14.53□□□□□ -0.08
SIK3-210ENST00000480468 KDM5BQ9UGL1 1544 aa14.52□□□□□ -0.08
SIK3-210ENST00000480468 ZBTB47Q9UFB7 747 aaPredicted RBP14.52□□□□□ -0.08
SIK3-210ENST00000480468 USP35Q9P2H5 1018 aa14.51□□□□□ -0.09
SIK3-210ENST00000480468 CNTLNQ9NXG0 1405 aa14.51□□□□□ -0.09
SIK3-210ENST00000480468 C11orf95C9JLR9 678 aaPredicted RBP14.51□□□□□ -0.09
SIK3-210ENST00000480468 UACAQ9BZF9 1416 aa14.5□□□□□ -0.09
SIK3-210ENST00000480468 FAM50AQ14320 339 aaKnown RBP14.5□□□□□ -0.09
SIK3-210ENST00000480468 IL27Q8NEV9 243 aa14.49□□□□□ -0.09
SIK3-210ENST00000480468 RNF123Q5XPI4 1314 aa14.47□□□□□ -0.09
SIK3-210ENST00000480468 SMG6Q86US8 1419 aaKnown RBP14.47□□□□□ -0.09
SIK3-210ENST00000480468 CUX1P39880 1505 aa14.47□□□□□ -0.09
SIK3-210ENST00000480468 BICRAQ9NZM4 1560 aa14.46□□□□□ -0.09
SIK3-210ENST00000480468 CCDC18Q5T9S5 1454 aa14.46□□□□□ -0.09
SIK3-210ENST00000480468 WASHC2CQ9Y4E1 1318 aa14.46□□□□□ -0.09
SIK3-210ENST00000480468 HFM1A2PYH4 1435 aa14.45□□□□□ -0.1
SIK3-210ENST00000480468 CCDC136Q96JN2 1154 aa14.45□□□□□ -0.1
SIK3-210ENST00000480468 PRKRIP1Q9H875 184 aaPredicted RBP14.43□□□□□ -0.1
SIK3-210ENST00000480468 PTPN23Q9H3S7 1636 aa14.41□□□□□ -0.1
SIK3-210ENST00000480468 HSPA5P11021 654 aaKnown RBP14.41□□□□□ -0.1
SIK3-210ENST00000480468 CCDC184Q52MB2 194 aa14.41□□□□□ -0.1
SIK3-210ENST00000480468 PCF11O94913 1555 aaKnown RBP14.41□□□□□ -0.1
SIK3-210ENST00000480468 NCOA1Q15788 1441 aa14.4□□□□□ -0.1
SIK3-210ENST00000480468 MRS2Q9HD23 443 aa14.39□□□□□ -0.11
SIK3-210ENST00000480468 FYCO1Q9BQS8 1478 aa14.38□□□□□ -0.11
SIK3-210ENST00000480468 EIF4G2P78344 907 aaKnown RBP eCLIP14.38□□□□□ -0.11
SIK3-210ENST00000480468 FGD6Q6ZV73 1430 aa14.38□□□□□ -0.11
SIK3-210ENST00000480468 AQRO60306 1485 aaKnown RBP eCLIP14.37□□□□□ -0.11
SIK3-210ENST00000480468 ABCA5Q8WWZ7 1642 aa14.37□□□□□ -0.11
SIK3-210ENST00000480468 PPM1GO15355 546 aaPredicted RBP14.37□□□□□ -0.11
SIK3-210ENST00000480468 FAM9BQ8IZU0 186 aa14.37□□□□□ -0.11
SIK3-210ENST00000480468 CCDC7Q96M83 1385 aa14.37□□□□□ -0.11
SIK3-210ENST00000480468 NUDCQ9Y266 331 aa14.37□□□□□ -0.11
SIK3-210ENST00000480468 IGF1RP08069 1367 aa14.35□□□□□ -0.11
SIK3-210ENST00000480468 AKNAQ7Z591 1439 aa14.35□□□□□ -0.11
SIK3-210ENST00000480468 RTN4Q9NQC3 1192 aaKnown RBP14.35□□□□□ -0.11
SIK3-210ENST00000480468 NEFMP07197 916 aa14.34□□□□□ -0.11
SIK3-210ENST00000480468 NAIPQ13075 1403 aa14.34□□□□□ -0.11
SIK3-210ENST00000480468 CASKIN1Q8WXD9 1431 aa14.34□□□□□ -0.11
SIK3-210ENST00000480468 POLR1AO95602 1720 aaPredicted RBP14.33□□□□□ -0.11
SIK3-210ENST00000480468 FMN1Q68DA7 1419 aa14.33□□□□□ -0.12
SIK3-210ENST00000480468 TCERG1O14776 1098 aaKnown RBP14.33□□□□□ -0.12
SIK3-210ENST00000480468 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.32□□□□□ -0.12
SIK3-210ENST00000480468 PTPRKQ15262 1439 aa14.31□□□□□ -0.12
SIK3-210ENST00000480468 EFCAB5A4FU69 1503 aa14.31□□□□□ -0.12
SIK3-210ENST00000480468 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
SIK3-210ENST00000480468 HECW1Q76N89 1606 aa14.3□□□□□ -0.12
SIK3-210ENST00000480468 MS4A1P11836 297 aa14.3□□□□□ -0.12
SIK3-210ENST00000480468 CARMIL1Q5VZK9 1371 aa14.29□□□□□ -0.12
SIK3-210ENST00000480468 GSE1Q14687 1217 aa14.25□□□□□ -0.13
SIK3-210ENST00000480468 PABPN1Q86U42 306 aaKnown RBP eCLIP14.25□□□□□ -0.13
SIK3-210ENST00000480468 BACH2Q9BYV9 841 aa14.25□□□□□ -0.13
SIK3-210ENST00000480468 LAS1LQ9Y4W2 734 aaKnown RBP14.25□□□□□ -0.13
SIK3-210ENST00000480468 CFTRP13569 1480 aa14.25□□□□□ -0.13
SIK3-210ENST00000480468 PDE4AP27815 886 aa14.25□□□□□ -0.13
SIK3-210ENST00000480468 SPATA31E1Q6ZUB1 1445 aa14.24□□□□□ -0.13
SIK3-210ENST00000480468 HMGXB3Q12766 1538 aa14.24□□□□□ -0.13
SIK3-210ENST00000480468 GCC2Q8IWJ2 1684 aa14.24□□□□□ -0.13
SIK3-210ENST00000480468 DENND4BO75064 1496 aaPredicted RBP14.24□□□□□ -0.13
SIK3-210ENST00000480468 DDRGK1Q96HY6 314 aa14.23□□□□□ -0.13
SIK3-210ENST00000480468 RSPH6AQ9H0K4 717 aa14.22□□□□□ -0.13
SIK3-210ENST00000480468 BRPF3Q9ULD4 1205 aa14.22□□□□□ -0.13
SIK3-210ENST00000480468 MYOM3Q5VTT5 1437 aa14.22□□□□□ -0.13
SIK3-210ENST00000480468 KIF7Q2M1P5 1343 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms