RNA–Protein interactions for RNA: ENST00000480058.5

PRPF4B-205, Transcript of pre-mRNA processing factor 4B, humanhuman

TSL 1 (best)

Gene PRPF4B, Length 6,775 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4B-205ENST00000480058 CEP164Q9UPV0 1460 aa8.07□□□□□ -1.12
PRPF4B-205ENST00000480058 MYH16Q9H6N6 1097 aa8.06□□□□□ -1.12
PRPF4B-205ENST00000480058 ABCC9O60706 1549 aa8.06□□□□□ -1.12
PRPF4B-205ENST00000480058 NCLP19338 710 aaKnown RBP8.06□□□□□ -1.12
PRPF4B-205ENST00000480058 HAP1P54257 671 aaPredicted RBP8.05□□□□□ -1.12
PRPF4B-205ENST00000480058 L1TD1Q5T7N2 865 aaKnown RBP8.03□□□□□ -1.12
PRPF4B-205ENST00000480058 PABPN1Q86U42 306 aaKnown RBP eCLIP8.03□□□□□ -1.12
PRPF4B-205ENST00000480058 NOP58Q9Y2X3 529 aaKnown RBP8.03□□□□□ -1.12
PRPF4B-205ENST00000480058 CFAP53Q96M91 514 aa8.03□□□□□ -1.12
PRPF4B-205ENST00000480058 PTMSP20962 102 aa8.03□□□□□ -1.12
PRPF4B-205ENST00000480058 USP35Q9P2H5 1018 aa8.02□□□□□ -1.13
PRPF4B-205ENST00000480058 FHAD1B1AJZ9 1412 aa8.01□□□□□ -1.13
PRPF4B-205ENST00000480058 WRNQ14191 1432 aaPredicted RBP eCLIP8.01□□□□□ -1.13
PRPF4B-205ENST00000480058 SUPT16HQ9Y5B9 1047 aaKnown RBP8.01□□□□□ -1.13
PRPF4B-205ENST00000480058 KIF27Q86VH2 1401 aa8.01□□□□□ -1.13
PRPF4B-205ENST00000480058 NRDCO43847 1150 aa8□□□□□ -1.13
PRPF4B-205ENST00000480058 P3H3Q8IVL6 736 aa8□□□□□ -1.13
PRPF4B-205ENST00000480058 NBR1Q14596 966 aa8□□□□□ -1.13
PRPF4B-205ENST00000480058 ZNF777Q9ULD5 760 aaPredicted RBP8□□□□□ -1.13
PRPF4B-205ENST00000480058 TCERG1O14776 1098 aaKnown RBP7.99□□□□□ -1.13
PRPF4B-205ENST00000480058 SCRIBQ14160 1630 aa7.98□□□□□ -1.13
PRPF4B-205ENST00000480058 PDE3BQ13370 1112 aa7.98□□□□□ -1.13
PRPF4B-205ENST00000480058 CCNB3Q8WWL7 1395 aa7.98□□□□□ -1.13
PRPF4B-205ENST00000480058 KNSTRNQ9Y448 316 aa7.97□□□□□ -1.13
PRPF4B-205ENST00000480058 NUDCQ9Y266 331 aa7.96□□□□□ -1.14
PRPF4B-205ENST00000480058 CASC1Q6TDU7 716 aa7.96□□□□□ -1.14
PRPF4B-205ENST00000480058 NGEFQ8N5V2 710 aa7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 CHMP4AQ9BY43 222 aa7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 PNNQ9H307 717 aaKnown RBP7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 PLEKHD1A6NEE1 506 aa7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 NPM1P06748 294 aaKnown RBP eCLIP7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 ESF1Q9H501 851 aaKnown RBP7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 VPS8Q8N3P4 1428 aa7.95□□□□□ -1.14
PRPF4B-205ENST00000480058 RBM19Q9Y4C8 960 aaKnown RBP7.94□□□□□ -1.14
PRPF4B-205ENST00000480058 FBLN2P98095 1184 aa7.93□□□□□ -1.14
PRPF4B-205ENST00000480058 ZRSR1Q15695 479 aaKnown RBP7.92□□□□□ -1.14
PRPF4B-205ENST00000480058 ROCK2O75116 1388 aaKnown RBP7.92□□□□□ -1.14
PRPF4B-205ENST00000480058 PTMAP06454 111 aaKnown RBP7.92□□□□□ -1.14
PRPF4B-205ENST00000480058 BCL11AQ9H165 835 aa7.91□□□□□ -1.14
PRPF4B-205ENST00000480058 RALBP1Q15311 655 aa7.91□□□□□ -1.14
PRPF4B-205ENST00000480058 CARD11Q9BXL7 1154 aa7.91□□□□□ -1.14
PRPF4B-205ENST00000480058 PHLDB1Q86UU1 1377 aa7.91□□□□□ -1.14
PRPF4B-205ENST00000480058 CHIC2Q9UKJ5 165 aa7.91□□□□□ -1.14
PRPF4B-205ENST00000480058 GOLGA6L6A8MZA4 724 aa7.9□□□□□ -1.14
PRPF4B-205ENST00000480058 CHAF1AQ13111 956 aaPredicted RBP7.9□□□□□ -1.14
PRPF4B-205ENST00000480058 CFDP1Q9UEE9 299 aaPredicted RBP7.9□□□□□ -1.15
PRPF4B-205ENST00000480058 STAG3Q9UJ98 1225 aa7.89□□□□□ -1.15
PRPF4B-205ENST00000480058 SETD5Q9C0A6 1442 aa7.89□□□□□ -1.15
PRPF4B-205ENST00000480058 PPP1R15AO75807 674 aaPredicted RBP7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 CDK11BP21127 795 aaKnown RBP7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 DEKP35659 375 aaKnown RBP7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 GBP4Q96PP9 640 aa7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 FTSJ3Q8IY81 847 aaKnown RBP7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 FANCIQ9NVI1 1328 aa7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 RB1CC1Q8TDY2 1594 aa7.88□□□□□ -1.15
PRPF4B-205ENST00000480058 TMF1P82094 1093 aa7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 SALL2Q9Y467 1007 aaPredicted RBP7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 IPO8O15397 1037 aaKnown RBP7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 HSCBQ8IWL3 235 aa7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 MYO15BQ96JP2 1530 aa7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 MAPK8IP3Q9UPT6 1336 aa7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 BAZ1AQ9NRL2 1556 aaPredicted RBP7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 NACADO15069 1562 aa7.87□□□□□ -1.15
PRPF4B-205ENST00000480058 IPO9Q96P70 1041 aaKnown RBP7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 NAP1L5Q96NT1 182 aaPredicted RBP7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 HDAC5Q9UQL6 1122 aa7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 CHGAP10645 457 aaKnown RBP7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 AAMPQ13685 434 aa7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 CALD1Q05682 793 aaKnown RBP7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 DNTTIP2Q5QJE6 756 aaKnown RBP7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 RRP7BPQ9NSQ0 103 aa7.86□□□□□ -1.15
PRPF4B-205ENST00000480058 IRX6P78412 446 aaPredicted RBP7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 TSHZ2Q9NRE2 1034 aa7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 KDM2AQ9Y2K7 1162 aa7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 MSNP26038 577 aaKnown RBP7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 RSPH4AQ5TD94 716 aa7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 NLRP13Q86W25 1043 aa7.85□□□□□ -1.15
PRPF4B-205ENST00000480058 SYAP1Q96A49 352 aaPredicted RBP7.84□□□□□ -1.15
PRPF4B-205ENST00000480058 RWDD1Q9H446 243 aaPredicted RBP7.84□□□□□ -1.15
PRPF4B-205ENST00000480058 MCCP23508 829 aa7.84□□□□□ -1.15
PRPF4B-205ENST00000480058 RSPH6AQ9H0K4 717 aa7.84□□□□□ -1.15
PRPF4B-205ENST00000480058 KIAA2012Q0VF49 1180 aa7.83□□□□□ -1.16
PRPF4B-205ENST00000480058 HTATSF1O43719 755 aaKnown RBP7.83□□□□□ -1.16
PRPF4B-205ENST00000480058 STAC3Q96MF2 364 aa7.83□□□□□ -1.16
PRPF4B-205ENST00000480058 CHMP7Q8WUX9 453 aaPredicted RBP7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 KTN1Q86UP2 1357 aaKnown RBP7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 B4GALNT3Q6L9W6 998 aa7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 RCAN3Q9UKA8 241 aa7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 HSP90AB1P08238 724 aaKnown RBP7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 CHMP4CQ96CF2 233 aa7.82□□□□□ -1.16
PRPF4B-205ENST00000480058 FMN1Q68DA7 1419 aa7.81□□□□□ -1.16
PRPF4B-205ENST00000480058 PMFBP1Q8TBY8 1022 aa7.81□□□□□ -1.16
PRPF4B-205ENST00000480058 RGS3P49796 1198 aa7.81□□□□□ -1.16
PRPF4B-205ENST00000480058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.81□□□□□ -1.163e-7■■□□□ 13.8
PRPF4B-205ENST00000480058 GOLGA6L4A6NEF3 574 aa7.8□□□□□ -1.16
PRPF4B-205ENST00000480058 CARMIL1Q5VZK9 1371 aa7.8□□□□□ -1.16
PRPF4B-205ENST00000480058 ARID3CA6NKF2 412 aa7.8□□□□□ -1.16
PRPF4B-205ENST00000480058 SIN3AQ96ST3 1273 aa7.8□□□□□ -1.16
PRPF4B-205ENST00000480058 SKOR2Q2VWA4 1001 aaPredicted RBP7.79□□□□□ -1.16
PRPF4B-205ENST00000480058 LAS1LQ9Y4W2 734 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 397.2 ms