RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
GPNMB-211ENST00000479625 ADAMTS12P58397 1594 aa18.04■□□□□ 0.48
GPNMB-211ENST00000479625 ABCA10Q8WWZ4 1543 aa18.03■□□□□ 0.48
GPNMB-211ENST00000479625 GRIN2AQ12879 1464 aa18.02■□□□□ 0.48
GPNMB-211ENST00000479625 SHROOM2Q13796 1616 aa18■□□□□ 0.47
GPNMB-211ENST00000479625 NUP160Q12769 1436 aa17.94■□□□□ 0.46
GPNMB-211ENST00000479625 BIVM-ERCC5R4GMW8 1640 aa17.9■□□□□ 0.46
GPNMB-211ENST00000479625 TOP2BQ02880 1626 aa17.84■□□□□ 0.45
GPNMB-211ENST00000479625 FHAD1B1AJZ9 1412 aa17.82■□□□□ 0.44
GPNMB-211ENST00000479625 WRNQ14191 1432 aaPredicted RBP eCLIP17.82■□□□□ 0.44
GPNMB-211ENST00000479625 RUSC2Q8N2Y8 1516 aa17.81■□□□□ 0.44
GPNMB-211ENST00000479625 ERICH3Q5RHP9 1530 aa17.8■□□□□ 0.44
GPNMB-211ENST00000479625 DIP2BQ9P265 1576 aa17.79■□□□□ 0.44
GPNMB-211ENST00000479625 CNKSR2Q8WXI2 1034 aa17.78■□□□□ 0.44
GPNMB-211ENST00000479625 PRG4Q92954 1404 aaPredicted RBP17.78■□□□□ 0.44
GPNMB-211ENST00000479625 ADCY10Q96PN6 1610 aa17.76■□□□□ 0.43
GPNMB-211ENST00000479625 TSPOAP1O95153 1857 aa17.75■□□□□ 0.43
GPNMB-211ENST00000479625 KDM6BO15054 1643 aa17.74■□□□□ 0.43
GPNMB-211ENST00000479625 ABCC10Q5T3U5 1492 aa17.74■□□□□ 0.43
GPNMB-211ENST00000479625 MAPKBP1O60336 1514 aa17.73■□□□□ 0.43
GPNMB-211ENST00000479625 FAM69CQ0P6D2 419 aa17.67■□□□□ 0.42
GPNMB-211ENST00000479625 JPH4Q96JJ6 628 aa17.65■□□□□ 0.42
GPNMB-211ENST00000479625 KDM4FA0A1W2PPD8 638 aa17.62■□□□□ 0.41
GPNMB-211ENST00000479625 DCAF8L1A6NGE4 600 aa17.61■□□□□ 0.41
GPNMB-211ENST00000479625 HOXD11P31277 338 aaPredicted RBP17.6■□□□□ 0.41
GPNMB-211ENST00000479625 SUPT5HO00267 1087 aaKnown RBP17.59■□□□□ 0.41
GPNMB-211ENST00000479625 PPRC1Q5VV67 1664 aaKnown RBP17.58■□□□□ 0.4
GPNMB-211ENST00000479625 NPM1P06748 294 aaKnown RBP eCLIP17.57■□□□□ 0.4
GPNMB-211ENST00000479625 RNF216Q9NWF9 866 aaPredicted RBP17.56■□□□□ 0.4
GPNMB-211ENST00000479625 NCBP3Q53F19 620 aaKnown RBP17.55■□□□□ 0.4
GPNMB-211ENST00000479625 CUL7Q14999 1698 aa17.54■□□□□ 0.4
GPNMB-211ENST00000479625 KIAA0586Q9BVV6 1533 aa17.52■□□□□ 0.39
GPNMB-211ENST00000479625 ILDR1Q86SU0 546 aaPredicted RBP17.51■□□□□ 0.39
GPNMB-211ENST00000479625 ADGRL1O94910 1474 aa17.47■□□□□ 0.39
GPNMB-211ENST00000479625 GLI2P10070 1586 aa17.44■□□□□ 0.38
GPNMB-211ENST00000479625 ABCC2Q92887 1545 aa17.43■□□□□ 0.38
GPNMB-211ENST00000479625 TTBK1Q5TCY1 1321 aaPredicted RBP17.43■□□□□ 0.38
GPNMB-211ENST00000479625 HECW2Q9P2P5 1572 aa17.41■□□□□ 0.38
GPNMB-211ENST00000479625 MAP3K4Q9Y6R4 1608 aa17.41■□□□□ 0.38
GPNMB-211ENST00000479625 PTPRGP23470 1445 aa17.4■□□□□ 0.38
GPNMB-211ENST00000479625 ASXL2Q76L83 1435 aa17.4■□□□□ 0.38
GPNMB-211ENST00000479625 IGF1RP08069 1367 aa17.4■□□□□ 0.38
GPNMB-211ENST00000479625 IQGAP2Q13576 1575 aa17.39■□□□□ 0.37
GPNMB-211ENST00000479625 KIF27Q86VH2 1401 aa17.38■□□□□ 0.37
GPNMB-211ENST00000479625 PLB1Q6P1J6 1458 aa17.37■□□□□ 0.37
GPNMB-211ENST00000479625 COL17A1Q9UMD9 1497 aaPredicted RBP17.37■□□□□ 0.37
GPNMB-211ENST00000479625 ZCCHC11Q5TAX3 1644 aaKnown RBP17.36■□□□□ 0.37
GPNMB-211ENST00000479625 TNIKQ9UKE5 1360 aa17.35■□□□□ 0.37
GPNMB-211ENST00000479625 UHRF1BP1LA0JNW5 1464 aa17.33■□□□□ 0.37
GPNMB-211ENST00000479625 CARMIL2Q6F5E8 1435 aa17.33■□□□□ 0.36
GPNMB-211ENST00000479625 NPM3O75607 178 aaKnown RBP17.33■□□□□ 0.36
GPNMB-211ENST00000479625 EPRSP07814 1512 aaKnown RBP17.31■□□□□ 0.36
GPNMB-211ENST00000479625 DISP1Q96F81 1524 aa17.31■□□□□ 0.36
GPNMB-211ENST00000479625 UACAQ9BZF9 1416 aa17.29■□□□□ 0.36
GPNMB-211ENST00000479625 KDM5BQ9UGL1 1544 aa17.28■□□□□ 0.36
GPNMB-211ENST00000479625 CARMIL1Q5VZK9 1371 aa17.28■□□□□ 0.36
GPNMB-211ENST00000479625 TEX14Q8IWB6 1497 aa17.26■□□□□ 0.35
GPNMB-211ENST00000479625 KIAA0556O60303 1618 aa17.26■□□□□ 0.35
GPNMB-211ENST00000479625 KIF21BO75037 1637 aa17.23■□□□□ 0.35
GPNMB-211ENST00000479625 KCNA4P22459 653 aa17.22■□□□□ 0.35
GPNMB-211ENST00000479625 UGGT2Q9NYU1 1516 aa17.21■□□□□ 0.35
GPNMB-211ENST00000479625 CFAP43Q8NDM7 1665 aa17.2■□□□□ 0.34
GPNMB-211ENST00000479625 CTTNBP2Q8WZ74 1663 aa17.2■□□□□ 0.34
GPNMB-211ENST00000479625 WDR7Q9Y4E6 1490 aa17.18■□□□□ 0.34
GPNMB-211ENST00000479625 RAPGEF2Q9Y4G8 1499 aa17.12■□□□□ 0.33
GPNMB-211ENST00000479625 MAGI3Q5TCQ9 1506 aa17.11■□□□□ 0.33
GPNMB-211ENST00000479625 ABCA8O94911 1581 aa17.1■□□□□ 0.33
GPNMB-211ENST00000479625 CD109Q6YHK3 1445 aa17.07■□□□□ 0.32
GPNMB-211ENST00000479625 ADAMTSL3P82987 1691 aa17.04■□□□□ 0.32
GPNMB-211ENST00000479625 CACNB1Q02641 598 aaPredicted RBP17■□□□□ 0.31
GPNMB-211ENST00000479625 KCNH8Q96L42 1107 aa17■□□□□ 0.31
GPNMB-211ENST00000479625 RNF39Q9H2S5 420 aa17■□□□□ 0.31
GPNMB-211ENST00000479625 MADDQ8WXG6 1647 aa16.99■□□□□ 0.31
GPNMB-211ENST00000479625 ARAP3Q8WWN8 1544 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 FBXO41Q8TF61 875 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 ABCA9Q8IUA7 1624 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 BCORL1Q5H9F3 1711 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 PTPRMP28827 1452 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 GOLGA3Q08378 1498 aa16.98■□□□□ 0.31
GPNMB-211ENST00000479625 FRMPD1Q5SYB0 1578 aa16.96■□□□□ 0.31
GPNMB-211ENST00000479625 PCF11O94913 1555 aaKnown RBP16.94■□□□□ 0.3
GPNMB-211ENST00000479625 RIMS1Q86UR5 1692 aaKnown RBP16.93■□□□□ 0.3
GPNMB-211ENST00000479625 ARID3CA6NKF2 412 aa16.91■□□□□ 0.3
GPNMB-211ENST00000479625 LMTK3Q96Q04 1460 aa16.9■□□□□ 0.3
GPNMB-211ENST00000479625 ATP10BO94823 1461 aa16.88■□□□□ 0.29
GPNMB-211ENST00000479625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.87■□□□□ 0.29
GPNMB-211ENST00000479625 ARHGEF40Q8TER5 1519 aa16.86■□□□□ 0.29
GPNMB-211ENST00000479625 RAPGEF6Q8TEU7 1601 aa16.86■□□□□ 0.29
GPNMB-211ENST00000479625 RICTORQ6R327 1708 aa16.86■□□□□ 0.29
GPNMB-211ENST00000479625 SIGLEC1Q9BZZ2 1709 aa16.85■□□□□ 0.29
GPNMB-211ENST00000479625 SAMD9Q5K651 1589 aa16.85■□□□□ 0.29
GPNMB-211ENST00000479625 PRXQ9BXM0 1461 aa16.84■□□□□ 0.29
GPNMB-211ENST00000479625 RAPGEF3O95398 923 aa16.83■□□□□ 0.28
GPNMB-211ENST00000479625 NEO1Q92859 1461 aa16.83■□□□□ 0.28
GPNMB-211ENST00000479625 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
GPNMB-211ENST00000479625 PHLDB1Q86UU1 1377 aa16.79■□□□□ 0.28
GPNMB-211ENST00000479625 FER1L4A9Z1Z3 1794 aa16.78■□□□□ 0.28
GPNMB-211ENST00000479625 ARID4BQ4LE39 1312 aaPredicted RBP16.77■□□□□ 0.28
GPNMB-211ENST00000479625 CFAP74Q9C0B2 1584 aa16.76■□□□□ 0.27
GPNMB-211ENST00000479625 NUP153P49790 1475 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms