RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 ERICH3Q5RHP9 1530 aa12.04□□□□□ -0.48
VCP-205ENST00000479300 PRG4Q92954 1404 aaPredicted RBP12.03□□□□□ -0.48
VCP-205ENST00000479300 RUSC2Q8N2Y8 1516 aa12.01□□□□□ -0.49
VCP-205ENST00000479300 JPH4Q96JJ6 628 aa11.99□□□□□ -0.49
VCP-205ENST00000479300 ABCC10Q5T3U5 1492 aa11.99□□□□□ -0.49
VCP-205ENST00000479300 SUPT5HO00267 1087 aaKnown RBP11.98□□□□□ -0.49
VCP-205ENST00000479300 ADCY10Q96PN6 1610 aa11.97□□□□□ -0.49
VCP-205ENST00000479300 DIP2BQ9P265 1576 aa11.97□□□□□ -0.49
VCP-205ENST00000479300 MAPKBP1O60336 1514 aa11.96□□□□□ -0.49
VCP-205ENST00000479300 FAM69CQ0P6D2 419 aa11.95□□□□□ -0.5
VCP-205ENST00000479300 KDM4FA0A1W2PPD8 638 aa11.93□□□□□ -0.5
VCP-205ENST00000479300 KDM6BO15054 1643 aa11.89□□□□□ -0.51
VCP-205ENST00000479300 KIAA0586Q9BVV6 1533 aa11.87□□□□□ -0.51
VCP-205ENST00000479300 TSPOAP1O95153 1857 aa11.87□□□□□ -0.51
VCP-205ENST00000479300 IGF1RP08069 1367 aa11.86□□□□□ -0.51
VCP-205ENST00000479300 NPM1P06748 294 aaKnown RBP eCLIP11.85□□□□□ -0.51
VCP-205ENST00000479300 PPRC1Q5VV67 1664 aaKnown RBP11.84□□□□□ -0.51
VCP-205ENST00000479300 CUL7Q14999 1698 aa11.81□□□□□ -0.52
VCP-205ENST00000479300 PTPRGP23470 1445 aa11.79□□□□□ -0.52
VCP-205ENST00000479300 ABCC2Q92887 1545 aa11.79□□□□□ -0.52
VCP-205ENST00000479300 COL17A1Q9UMD9 1497 aaPredicted RBP11.78□□□□□ -0.52
VCP-205ENST00000479300 ILDR1Q86SU0 546 aaPredicted RBP11.78□□□□□ -0.52
VCP-205ENST00000479300 ASXL2Q76L83 1435 aa11.77□□□□□ -0.52
VCP-205ENST00000479300 KIF27Q86VH2 1401 aa11.77□□□□□ -0.52
VCP-205ENST00000479300 GLI2P10070 1586 aa11.77□□□□□ -0.53
VCP-205ENST00000479300 TTBK1Q5TCY1 1321 aaPredicted RBP11.76□□□□□ -0.53
VCP-205ENST00000479300 ADGRL1O94910 1474 aa11.76□□□□□ -0.53
VCP-205ENST00000479300 TNIKQ9UKE5 1360 aa11.75□□□□□ -0.53
VCP-205ENST00000479300 CARMIL1Q5VZK9 1371 aa11.74□□□□□ -0.53
VCP-205ENST00000479300 UHRF1BP1LA0JNW5 1464 aa11.74□□□□□ -0.53
VCP-205ENST00000479300 PLB1Q6P1J6 1458 aa11.74□□□□□ -0.53
VCP-205ENST00000479300 DISP1Q96F81 1524 aa11.74□□□□□ -0.53
VCP-205ENST00000479300 IQGAP2Q13576 1575 aa11.73□□□□□ -0.53
VCP-205ENST00000479300 MAP3K4Q9Y6R4 1608 aa11.71□□□□□ -0.53
VCP-205ENST00000479300 EPRSP07814 1512 aaKnown RBP11.71□□□□□ -0.53
VCP-205ENST00000479300 CARMIL2Q6F5E8 1435 aa11.71□□□□□ -0.53
VCP-205ENST00000479300 KDM5BQ9UGL1 1544 aa11.7□□□□□ -0.54
VCP-205ENST00000479300 UACAQ9BZF9 1416 aa11.7□□□□□ -0.54
VCP-205ENST00000479300 ZCCHC11Q5TAX3 1644 aaKnown RBP11.68□□□□□ -0.54
VCP-205ENST00000479300 HECW2Q9P2P5 1572 aa11.68□□□□□ -0.54
VCP-205ENST00000479300 UGGT2Q9NYU1 1516 aa11.66□□□□□ -0.54
VCP-205ENST00000479300 KIAA0556O60303 1618 aa11.64□□□□□ -0.55
VCP-205ENST00000479300 TEX14Q8IWB6 1497 aa11.63□□□□□ -0.55
VCP-205ENST00000479300 WDR7Q9Y4E6 1490 aa11.61□□□□□ -0.55
VCP-205ENST00000479300 RAPGEF2Q9Y4G8 1499 aa11.6□□□□□ -0.55
VCP-205ENST00000479300 MAGI3Q5TCQ9 1506 aa11.57□□□□□ -0.56
VCP-205ENST00000479300 ABCA8O94911 1581 aa11.57□□□□□ -0.56
VCP-205ENST00000479300 CFAP43Q8NDM7 1665 aa11.55□□□□□ -0.56
VCP-205ENST00000479300 CD109Q6YHK3 1445 aa11.55□□□□□ -0.56
VCP-205ENST00000479300 KIF21BO75037 1637 aa11.55□□□□□ -0.56
VCP-205ENST00000479300 CTTNBP2Q8WZ74 1663 aa11.53□□□□□ -0.56
VCP-205ENST00000479300 ADRA2BP18089 450 aa11.53□□□□□ -0.56
VCP-205ENST00000479300 FOXD1Q16676 465 aa11.53□□□□□ -0.56
VCP-205ENST00000479300 KCNH8Q96L42 1107 aa11.51□□□□□ -0.57
VCP-205ENST00000479300 ARAP3Q8WWN8 1544 aa11.5□□□□□ -0.57
VCP-205ENST00000479300 PPP6R1Q9UPN7 881 aa11.49□□□□□ -0.57
VCP-205ENST00000479300 GOLGA3Q08378 1498 aa11.48□□□□□ -0.57
VCP-205ENST00000479300 ADAMTSL3P82987 1691 aa11.47□□□□□ -0.57
VCP-205ENST00000479300 PRXQ9BXM0 1461 aa11.47□□□□□ -0.57
VCP-205ENST00000479300 ATP10BO94823 1461 aa11.46□□□□□ -0.57
VCP-205ENST00000479300 PTPRMP28827 1452 aa11.45□□□□□ -0.58
VCP-205ENST00000479300 ARID3CA6NKF2 412 aa11.45□□□□□ -0.58
VCP-205ENST00000479300 ABCA9Q8IUA7 1624 aa11.45□□□□□ -0.58
VCP-205ENST00000479300 FRMPD1Q5SYB0 1578 aa11.45□□□□□ -0.58
VCP-205ENST00000479300 FBXO41Q8TF61 875 aa11.43□□□□□ -0.58
VCP-205ENST00000479300 RAPGEF3O95398 923 aa11.42□□□□□ -0.58
VCP-205ENST00000479300 P3H3Q8IVL6 736 aa11.41□□□□□ -0.58
VCP-205ENST00000479300 MADDQ8WXG6 1647 aa11.41□□□□□ -0.58
VCP-205ENST00000479300 BCORL1Q5H9F3 1711 aa11.4□□□□□ -0.58
VCP-205ENST00000479300 LMTK3Q96Q04 1460 aa11.39□□□□□ -0.59
VCP-205ENST00000479300 SAMD9Q5K651 1589 aa11.39□□□□□ -0.59
VCP-205ENST00000479300 NEO1Q92859 1461 aa11.38□□□□□ -0.59
VCP-205ENST00000479300 PCF11O94913 1555 aaKnown RBP11.38□□□□□ -0.59
VCP-205ENST00000479300 RAPGEF6Q8TEU7 1601 aa11.37□□□□□ -0.59
VCP-205ENST00000479300 PHLDB1Q86UU1 1377 aa11.37□□□□□ -0.59
VCP-205ENST00000479300 SIGLEC1Q9BZZ2 1709 aa11.37□□□□□ -0.59
VCP-205ENST00000479300 NUP153P49790 1475 aaKnown RBP11.36□□□□□ -0.59
VCP-205ENST00000479300 ARHGEF40Q8TER5 1519 aa11.35□□□□□ -0.59
VCP-205ENST00000479300 RICTORQ6R327 1708 aa11.35□□□□□ -0.59
VCP-205ENST00000479300 RIMS1Q86UR5 1692 aaKnown RBP11.34□□□□□ -0.59
VCP-205ENST00000479300 HSPA2P54652 639 aa11.31□□□□□ -0.6
VCP-205ENST00000479300 ARID4BQ4LE39 1312 aaPredicted RBP11.31□□□□□ -0.6
VCP-205ENST00000479300 FHOD3Q2V2M9 1422 aa11.3□□□□□ -0.6
VCP-205ENST00000479300 YEATS2Q9ULM3 1422 aa11.3□□□□□ -0.6
VCP-205ENST00000479300 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.3□□□□□ -0.6
VCP-205ENST00000479300 TTC37Q6PGP7 1564 aa11.29□□□□□ -0.6
VCP-205ENST00000479300 DENND4BO75064 1496 aaPredicted RBP11.29□□□□□ -0.6
VCP-205ENST00000479300 ZMYM4Q5VZL5 1548 aa11.29□□□□□ -0.6
VCP-205ENST00000479300 AKNAQ7Z591 1439 aa11.28□□□□□ -0.6
VCP-205ENST00000479300 FANCAO15360 1455 aa11.27□□□□□ -0.6
VCP-205ENST00000479300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.26□□□□□ -0.61
VCP-205ENST00000479300 HNRNPUL2Q1KMD3 747 aaKnown RBP11.26□□□□□ -0.61
VCP-205ENST00000479300 CSRNP3Q8WYN3 585 aa11.26□□□□□ -0.61
VCP-205ENST00000479300 ZFYVE16Q7Z3T8 1539 aa11.25□□□□□ -0.61
VCP-205ENST00000479300 HECW1Q76N89 1606 aa11.24□□□□□ -0.61
VCP-205ENST00000479300 RANGAP1P46060 587 aaPredicted RBP11.24□□□□□ -0.61
VCP-205ENST00000479300 CFAP74Q9C0B2 1584 aa11.24□□□□□ -0.61
VCP-205ENST00000479300 EFCAB5A4FU69 1503 aa11.23□□□□□ -0.61
VCP-205ENST00000479300 CDK13Q14004 1512 aaKnown RBP11.23□□□□□ -0.61
VCP-205ENST00000479300 PLEKHD1A6NEE1 506 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms