RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 CANXP27824 592 aaKnown RBP19.4■□□□□ 0.7
NPHP4-208ENST00000478423 SMARCA2P51531 1590 aa19.37■□□□□ 0.69
NPHP4-208ENST00000478423 ERCC6Q03468 1493 aa19.37■□□□□ 0.69
NPHP4-208ENST00000478423 RTL5Q5HYW3 569 aaPredicted RBP19.37■□□□□ 0.69
NPHP4-208ENST00000478423 EIF4G2P78344 907 aaKnown RBP eCLIP19.36■□□□□ 0.692e-7■■■■■ 44.3
NPHP4-208ENST00000478423 FKBP8Q14318 412 aa19.35■□□□□ 0.69
NPHP4-208ENST00000478423 PLPPR3Q6T4P5 718 aa19.35■□□□□ 0.69
NPHP4-208ENST00000478423 WIZO95785 1651 aa19.35■□□□□ 0.69
NPHP4-208ENST00000478423 SLC24A1O60721 1099 aa19.34■□□□□ 0.69
NPHP4-208ENST00000478423 TMC1Q8TDI8 760 aa19.34■□□□□ 0.69
NPHP4-208ENST00000478423 SALL2Q9Y467 1007 aaPredicted RBP19.34■□□□□ 0.69
NPHP4-208ENST00000478423 MRS2Q9HD23 443 aa19.31■□□□□ 0.68
NPHP4-208ENST00000478423 FHAD1B1AJZ9 1412 aa19.3■□□□□ 0.68
NPHP4-208ENST00000478423 BCL11AQ9H165 835 aa19.3■□□□□ 0.68
NPHP4-208ENST00000478423 ZBTB47Q9UFB7 747 aaPredicted RBP19.3■□□□□ 0.68
NPHP4-208ENST00000478423 RGL3Q3MIN7 710 aa19.29■□□□□ 0.68
NPHP4-208ENST00000478423 CCNB3Q8WWL7 1395 aa19.29■□□□□ 0.68
NPHP4-208ENST00000478423 TOP2AP11388 1531 aaKnown RBP19.28■□□□□ 0.68
NPHP4-208ENST00000478423 SIN3AQ96ST3 1273 aa19.28■□□□□ 0.68
NPHP4-208ENST00000478423 VPS8Q8N3P4 1428 aa19.26■□□□□ 0.67
NPHP4-208ENST00000478423 TDRD9Q8NDG6 1382 aaKnown RBP19.25■□□□□ 0.67
NPHP4-208ENST00000478423 KANK4Q5T7N3 995 aaPredicted RBP19.23■□□□□ 0.67
NPHP4-208ENST00000478423 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
NPHP4-208ENST00000478423 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
NPHP4-208ENST00000478423 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
NPHP4-208ENST00000478423 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
NPHP4-208ENST00000478423 SENP3Q9H4L4 574 aaPredicted RBP19.17■□□□□ 0.66
NPHP4-208ENST00000478423 WDR43Q15061 677 aaKnown RBP eCLIP19.14■□□□□ 0.65
NPHP4-208ENST00000478423 SMARCA4P51532 1647 aa19.12■□□□□ 0.65
NPHP4-208ENST00000478423 CARD11Q9BXL7 1154 aa19.1■□□□□ 0.65
NPHP4-208ENST00000478423 SCAF1Q9H7N4 1312 aaKnown RBP19.08■□□□□ 0.65
NPHP4-208ENST00000478423 ANP32AP39687 249 aaKnown RBP19.08■□□□□ 0.64
NPHP4-208ENST00000478423 NPM2Q86SE8 214 aaKnown RBP19.07■□□□□ 0.64
NPHP4-208ENST00000478423 CCDC136Q96JN2 1154 aa19.06■□□□□ 0.64
NPHP4-208ENST00000478423 IRX6P78412 446 aaPredicted RBP19.05■□□□□ 0.64
NPHP4-208ENST00000478423 RUSC2Q8N2Y8 1516 aa19.03■□□□□ 0.64
NPHP4-208ENST00000478423 RAPGEF2Q9Y4G8 1499 aa19.03■□□□□ 0.64
NPHP4-208ENST00000478423 PPP1R15AO75807 674 aaPredicted RBP19.02■□□□□ 0.64
NPHP4-208ENST00000478423 SETD5Q9C0A6 1442 aa19.01■□□□□ 0.63
NPHP4-208ENST00000478423 SENP3-EIF4A1A0A087X0R7 540 aa19.01■□□□□ 0.63
NPHP4-208ENST00000478423 ARHGAP35Q9NRY4 1499 aa19.01■□□□□ 0.63
NPHP4-208ENST00000478423 FMN1Q68DA7 1419 aa19■□□□□ 0.63
NPHP4-208ENST00000478423 TIMELESSQ9UNS1 1208 aa18.98■□□□□ 0.63
NPHP4-208ENST00000478423 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.98■□□□□ 0.63
NPHP4-208ENST00000478423 CARMIL2Q6F5E8 1435 aa18.96■□□□□ 0.63
NPHP4-208ENST00000478423 CDCA8Q53HL2 280 aa18.95■□□□□ 0.62
NPHP4-208ENST00000478423 FHOD3Q2V2M9 1422 aa18.95■□□□□ 0.62
NPHP4-208ENST00000478423 DCAF11Q8TEB1 546 aa18.94■□□□□ 0.62
NPHP4-208ENST00000478423 KNSTRNQ9Y448 316 aa18.94■□□□□ 0.62
NPHP4-208ENST00000478423 ARID4BQ4LE39 1312 aaPredicted RBP18.93■□□□□ 0.62
NPHP4-208ENST00000478423 RAB3GAP2Q9H2M9 1393 aa18.93■□□□□ 0.62
NPHP4-208ENST00000478423 FOXD1Q16676 465 aa18.92■□□□□ 0.62
NPHP4-208ENST00000478423 PKD2Q13563 968 aa18.9■□□□□ 0.62
NPHP4-208ENST00000478423 FANCD2Q9BXW9 1451 aa18.89■□□□□ 0.61
NPHP4-208ENST00000478423 JPH4Q96JJ6 628 aa18.85■□□□□ 0.61
NPHP4-208ENST00000478423 MPHOSPH9Q99550 1183 aa18.84■□□□□ 0.61
NPHP4-208ENST00000478423 SUPT16HQ9Y5B9 1047 aaKnown RBP18.84■□□□□ 0.61
NPHP4-208ENST00000478423 UPF2Q9HAU5 1272 aaKnown RBP18.84■□□□□ 0.61
NPHP4-208ENST00000478423 PLEKHG5O94827 1062 aa18.82■□□□□ 0.6
NPHP4-208ENST00000478423 EFCAB2Q5VUJ9 269 aa18.81■□□□□ 0.6
NPHP4-208ENST00000478423 CFAP53Q96M91 514 aa18.81■□□□□ 0.6
NPHP4-208ENST00000478423 HSPA5P11021 654 aaKnown RBP18.8■□□□□ 0.6
NPHP4-208ENST00000478423 C14orf37Q86TY3 774 aa18.8■□□□□ 0.6
NPHP4-208ENST00000478423 GGT6Q6P531 493 aa18.8■□□□□ 0.6
NPHP4-208ENST00000478423 PPM1GO15355 546 aaPredicted RBP18.79■□□□□ 0.6
NPHP4-208ENST00000478423 POGKQ9P215 609 aa18.79■□□□□ 0.6
NPHP4-208ENST00000478423 NUP155O75694 1391 aa18.79■□□□□ 0.6
NPHP4-208ENST00000478423 CC2D1BQ5T0F9 858 aaKnown RBP18.78■□□□□ 0.6
NPHP4-208ENST00000478423 KANK1Q14678 1352 aa18.78■□□□□ 0.6
NPHP4-208ENST00000478423 IGF1RP08069 1367 aa18.77■□□□□ 0.6
NPHP4-208ENST00000478423 HSP90AA1P07900 732 aaKnown RBP18.77■□□□□ 0.59
NPHP4-208ENST00000478423 TMF1P82094 1093 aa18.76■□□□□ 0.59
NPHP4-208ENST00000478423 NEUROD2Q15784 382 aa18.76■□□□□ 0.59
NPHP4-208ENST00000478423 NCAPD3P42695 1498 aa18.75■□□□□ 0.59
NPHP4-208ENST00000478423 TNNT2P45379 298 aaPredicted RBP18.75■□□□□ 0.59
NPHP4-208ENST00000478423 MLECQ14165 292 aa18.75■□□□□ 0.59
NPHP4-208ENST00000478423 ANKRD30AQ9BXX3 1397 aa18.75■□□□□ 0.59
NPHP4-208ENST00000478423 HNRNPMP52272 730 aaKnown RBP eCLIP18.74■□□□□ 0.599e-7■■■■■ 28.6
NPHP4-208ENST00000478423 ZBTB7CA1YPR0 619 aa18.74■□□□□ 0.59
NPHP4-208ENST00000478423 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
NPHP4-208ENST00000478423 L3MBTL2Q969R5 705 aa18.71■□□□□ 0.59
NPHP4-208ENST00000478423 CCDC18Q5T9S5 1454 aa18.69■□□□□ 0.58
NPHP4-208ENST00000478423 RAD54L2Q9Y4B4 1467 aa18.68■□□□□ 0.58
NPHP4-208ENST00000478423 CCER2I3L3R5 266 aa18.67■□□□□ 0.58
NPHP4-208ENST00000478423 SAFB2Q14151 953 aaKnown RBP eCLIP18.66■□□□□ 0.58
NPHP4-208ENST00000478423 KIF3BO15066 747 aa18.66■□□□□ 0.58
NPHP4-208ENST00000478423 NUDCQ9Y266 331 aa18.66■□□□□ 0.58
NPHP4-208ENST00000478423 RSPH4AQ5TD94 716 aa18.64■□□□□ 0.57
NPHP4-208ENST00000478423 MYH16Q9H6N6 1097 aa18.64■□□□□ 0.57
NPHP4-208ENST00000478423 DHX57Q6P158 1386 aaKnown RBP18.64■□□□□ 0.57
NPHP4-208ENST00000478423 GAPVD1Q14C86 1478 aa18.64■□□□□ 0.57
NPHP4-208ENST00000478423 MAPK8IP3Q9UPT6 1336 aa18.63■□□□□ 0.57
NPHP4-208ENST00000478423 TRHP20396 242 aaPredicted RBP18.62■□□□□ 0.57
NPHP4-208ENST00000478423 U2SURPO15042 1029 aaKnown RBP18.61■□□□□ 0.57
NPHP4-208ENST00000478423 SRPK2P78362 688 aaKnown RBP18.61■□□□□ 0.57
NPHP4-208ENST00000478423 SPAG9O60271 1321 aaKnown RBP18.6■□□□□ 0.57
NPHP4-208ENST00000478423 NBR1Q14596 966 aa18.59■□□□□ 0.57
NPHP4-208ENST00000478423 STK26Q9P289 416 aa18.59■□□□□ 0.57
NPHP4-208ENST00000478423 ROCK2O75116 1388 aaKnown RBP18.59■□□□□ 0.57
NPHP4-208ENST00000478423 PTPRGP23470 1445 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms