RNA–Protein interactions for RNA: ENST00000476089.1

ITGA4-207, Transcript of integrin subunit alpha 4, humanhuman

TSL 2

Gene ITGA4, Length 1,846 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-207ENST00000476089 ARHGAP35Q9NRY4 1499 aa31.89■■■□□ 2.7
ITGA4-207ENST00000476089 ADAMTS12P58397 1594 aa31.88■■■□□ 2.69
ITGA4-207ENST00000476089 APLP2Q06481 763 aa31.83■■■□□ 2.69
ITGA4-207ENST00000476089 SNAPC4Q5SXM2 1469 aa31.77■■■□□ 2.68
ITGA4-207ENST00000476089 EFCAB5A4FU69 1503 aa31.73■■■□□ 2.67
ITGA4-207ENST00000476089 MAGI1Q96QZ7 1491 aaPredicted RBP31.72■■■□□ 2.67
ITGA4-207ENST00000476089 TTBK1Q5TCY1 1321 aaPredicted RBP31.67■■■□□ 2.66
ITGA4-207ENST00000476089 P3H3Q8IVL6 736 aa31.63■■■□□ 2.65
ITGA4-207ENST00000476089 GRIN2AQ12879 1464 aa31.61■■■□□ 2.65
ITGA4-207ENST00000476089 SYNJ2O15056 1496 aa31.6■■■□□ 2.65
ITGA4-207ENST00000476089 CHMP7Q8WUX9 453 aaPredicted RBP31.59■■■□□ 2.65
ITGA4-207ENST00000476089 IQGAP2Q13576 1575 aa31.58■■■□□ 2.65
ITGA4-207ENST00000476089 FHOD3Q2V2M9 1422 aa31.57■■■□□ 2.64
ITGA4-207ENST00000476089 SAMD9Q5K651 1589 aa31.55■■■□□ 2.64
ITGA4-207ENST00000476089 FBLN2P98095 1184 aa31.5■■■□□ 2.63
ITGA4-207ENST00000476089 KIAA0586Q9BVV6 1533 aa31.5■■■□□ 2.63
ITGA4-207ENST00000476089 FMN1Q68DA7 1419 aa31.49■■■□□ 2.63
ITGA4-207ENST00000476089 PCF11O94913 1555 aaKnown RBP31.42■■■□□ 2.62
ITGA4-207ENST00000476089 MAP3K1Q13233 1512 aa31.42■■■□□ 2.62
ITGA4-207ENST00000476089 UGGT2Q9NYU1 1516 aa31.41■■■□□ 2.62
ITGA4-207ENST00000476089 FYCO1Q9BQS8 1478 aa31.4■■■□□ 2.62
ITGA4-207ENST00000476089 CASKIN1Q8WXD9 1431 aa31.4■■■□□ 2.62
ITGA4-207ENST00000476089 KANK4Q5T7N3 995 aaPredicted RBP31.38■■■□□ 2.61
ITGA4-207ENST00000476089 ATP1B4Q9UN42 357 aaPredicted RBP31.38■■■□□ 2.61
ITGA4-207ENST00000476089 CEP170Q5SW79 1584 aa31.37■■■□□ 2.61
ITGA4-207ENST00000476089 TIAM1Q13009 1591 aa31.36■■■□□ 2.61
ITGA4-207ENST00000476089 NUP160Q12769 1436 aa31.35■■■□□ 2.61
ITGA4-207ENST00000476089 CFAP43Q8NDM7 1665 aa31.27■■■□□ 2.6
ITGA4-207ENST00000476089 KIAA0556O60303 1618 aa31.24■■■□□ 2.59
ITGA4-207ENST00000476089 LRRC9Q6ZRR7 1453 aa31.23■■■□□ 2.59
ITGA4-207ENST00000476089 DISP1Q96F81 1524 aa31.23■■■□□ 2.59
ITGA4-207ENST00000476089 HRCP23327 699 aa31.21■■■□□ 2.59
ITGA4-207ENST00000476089 CHD1O14646 1710 aa31.2■■■□□ 2.59
ITGA4-207ENST00000476089 JPH4Q96JJ6 628 aa31.19■■■□□ 2.58
ITGA4-207ENST00000476089 CARMIL2Q6F5E8 1435 aa31.15■■■□□ 2.58
ITGA4-207ENST00000476089 HECW1Q76N89 1606 aa31.12■■■□□ 2.57
ITGA4-207ENST00000476089 CCDC18Q5T9S5 1454 aa31.09■■■□□ 2.57
ITGA4-207ENST00000476089 LRRIQ1Q96JM4 1722 aa31.07■■■□□ 2.56
ITGA4-207ENST00000476089 RRBP1Q9P2E9 1410 aaKnown RBP31.05■■■□□ 2.56
ITGA4-207ENST00000476089 MTUS2Q5JR59 1369 aa31.04■■■□□ 2.56
ITGA4-207ENST00000476089 HNRNPUL2Q1KMD3 747 aaKnown RBP31■■■□□ 2.55
ITGA4-207ENST00000476089 EPRSP07814 1512 aaKnown RBP30.98■■■□□ 2.55
ITGA4-207ENST00000476089 CCNB3Q8WWL7 1395 aa30.98■■■□□ 2.55
ITGA4-207ENST00000476089 RAPGEF6Q8TEU7 1601 aa30.97■■■□□ 2.55
ITGA4-207ENST00000476089 PRG4Q92954 1404 aaPredicted RBP30.95■■■□□ 2.54
ITGA4-207ENST00000476089 EHBP1L1Q8N3D4 1523 aa30.93■■■□□ 2.54
ITGA4-207ENST00000476089 PHLDB1Q86UU1 1377 aa30.93■■■□□ 2.54
ITGA4-207ENST00000476089 ZEB1P37275 1124 aaPredicted RBP30.89■■■□□ 2.53
ITGA4-207ENST00000476089 SHROOM2Q13796 1616 aa30.88■■■□□ 2.53
ITGA4-207ENST00000476089 CDK13Q14004 1512 aaKnown RBP30.88■■■□□ 2.53
ITGA4-207ENST00000476089 NUP153P49790 1475 aaKnown RBP30.87■■■□□ 2.53
ITGA4-207ENST00000476089 SUPT6HQ7KZ85 1726 aaKnown RBP30.87■■■□□ 2.53
ITGA4-207ENST00000476089 PLB1Q6P1J6 1458 aa30.85■■■□□ 2.53
ITGA4-207ENST00000476089 ARID3CA6NKF2 412 aa30.84■■■□□ 2.53
ITGA4-207ENST00000476089 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.84■■■□□ 2.53
ITGA4-207ENST00000476089 CCER1Q8TC90 406 aaPredicted RBP30.82■■■□□ 2.52
ITGA4-207ENST00000476089 MAGI3Q5TCQ9 1506 aa30.81■■■□□ 2.52
ITGA4-207ENST00000476089 CLASP1Q7Z460 1538 aa30.81■■■□□ 2.52
ITGA4-207ENST00000476089 NCOA2Q15596 1464 aa30.81■■■□□ 2.52
ITGA4-207ENST00000476089 CDK11AQ9UQ88 783 aaPredicted RBP30.81■■■□□ 2.52
ITGA4-207ENST00000476089 PTPRGP23470 1445 aa30.8■■■□□ 2.52
ITGA4-207ENST00000476089 ABCA8O94911 1581 aa30.76■■■□□ 2.51
ITGA4-207ENST00000476089 FAM50AQ14320 339 aaKnown RBP30.76■■■□□ 2.51
ITGA4-207ENST00000476089 FGD6Q6ZV73 1430 aa30.73■■■□□ 2.51
ITGA4-207ENST00000476089 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.72■■■□□ 2.51
ITGA4-207ENST00000476089 MYOM3Q5VTT5 1437 aa30.72■■■□□ 2.51
ITGA4-207ENST00000476089 ARHGEF11O15085 1522 aa30.71■■■□□ 2.51
ITGA4-207ENST00000476089 ITGAEP38570 1179 aa30.71■■■□□ 2.51
ITGA4-207ENST00000476089 ERCC6L2Q5T890 1561 aa30.64■■■□□ 2.49
ITGA4-207ENST00000476089 TROQ12816 1431 aaPredicted RBP30.62■■■□□ 2.49
ITGA4-207ENST00000476089 UACAQ9BZF9 1416 aa30.61■■■□□ 2.49
ITGA4-207ENST00000476089 ATP10BO94823 1461 aa30.59■■■□□ 2.49
ITGA4-207ENST00000476089 PLEKHD1A6NEE1 506 aa30.57■■■□□ 2.48
ITGA4-207ENST00000476089 OSCARQ8IYS5 282 aa30.56■■■□□ 2.48
ITGA4-207ENST00000476089 PTPN23Q9H3S7 1636 aa30.55■■■□□ 2.48
ITGA4-207ENST00000476089 MIA2Q96PC5 1412 aa30.55■■■□□ 2.48
ITGA4-207ENST00000476089 ADCY10Q96PN6 1610 aa30.5■■■□□ 2.47
ITGA4-207ENST00000476089 ABCC2Q92887 1545 aa30.49■■■□□ 2.47
ITGA4-207ENST00000476089 TCOF1Q13428 1488 aaKnown RBP30.48■■■□□ 2.47
ITGA4-207ENST00000476089 SETD5Q9C0A6 1442 aa30.45■■■□□ 2.46
ITGA4-207ENST00000476089 KIF14Q15058 1648 aa30.43■■■□□ 2.46
ITGA4-207ENST00000476089 ITSN2Q9NZM3 1697 aa30.41■■■□□ 2.46
ITGA4-207ENST00000476089 RAB3GAP2Q9H2M9 1393 aa30.4■■■□□ 2.46
ITGA4-207ENST00000476089 UHRF1BP1LA0JNW5 1464 aa30.4■■■□□ 2.46
ITGA4-207ENST00000476089 CFDP1Q9UEE9 299 aaPredicted RBP30.35■■■□□ 2.45
ITGA4-207ENST00000476089 GPATCH8Q9UKJ3 1502 aaKnown RBP30.34■■■□□ 2.45
ITGA4-207ENST00000476089 DHX57Q6P158 1386 aaKnown RBP30.33■■■□□ 2.45
ITGA4-207ENST00000476089 PTPRKQ15262 1439 aa30.33■■■□□ 2.45
ITGA4-207ENST00000476089 CLSPNQ9HAW4 1339 aa30.31■■■□□ 2.44
ITGA4-207ENST00000476089 ABCC10Q5T3U5 1492 aa30.3■■■□□ 2.44
ITGA4-207ENST00000476089 KDM5BQ9UGL1 1544 aa30.28■■■□□ 2.44
ITGA4-207ENST00000476089 ZCCHC11Q5TAX3 1644 aaKnown RBP30.27■■■□□ 2.44
ITGA4-207ENST00000476089 HFM1A2PYH4 1435 aa30.27■■■□□ 2.44
ITGA4-207ENST00000476089 CDC42BPAQ5VT25 1732 aa30.25■■■□□ 2.43
ITGA4-207ENST00000476089 ZNF644Q9H582 1327 aaPredicted RBP30.24■■■□□ 2.43
ITGA4-207ENST00000476089 CAMSAP2Q08AD1 1489 aa30.23■■■□□ 2.43
ITGA4-207ENST00000476089 ZNF777Q9ULD5 760 aaPredicted RBP30.22■■■□□ 2.43
ITGA4-207ENST00000476089 DNMT1P26358 1616 aaKnown RBP30.21■■■□□ 2.43
ITGA4-207ENST00000476089 DAPK1P53355 1430 aa30.21■■■□□ 2.43
ITGA4-207ENST00000476089 CHIC2Q9UKJ5 165 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms