RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 IRX6P78412 446 aaPredicted RBP15.64■□□□□ 0.09
U2AF1-209ENST00000475639 IL27Q8NEV9 243 aa15.63■□□□□ 0.09
U2AF1-209ENST00000475639 HSP90AA1P07900 732 aaKnown RBP15.62■□□□□ 0.09
U2AF1-209ENST00000475639 PPP1R15AO75807 674 aaPredicted RBP15.61■□□□□ 0.09
U2AF1-209ENST00000475639 CCER2I3L3R5 266 aa15.61■□□□□ 0.09
U2AF1-209ENST00000475639 NOP58Q9Y2X3 529 aaKnown RBP15.61■□□□□ 0.09
U2AF1-209ENST00000475639 PAK3O75914 559 aaPredicted RBP15.61■□□□□ 0.09
U2AF1-209ENST00000475639 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.58■□□□□ 0.08
U2AF1-209ENST00000475639 RTN4Q9NQC3 1192 aaKnown RBP15.56■□□□□ 0.08
U2AF1-209ENST00000475639 CEP164Q9UPV0 1460 aa15.56■□□□□ 0.08
U2AF1-209ENST00000475639 CUX2O14529 1486 aa15.54■□□□□ 0.08
U2AF1-209ENST00000475639 KIF21BO75037 1637 aa15.54■□□□□ 0.08
U2AF1-209ENST00000475639 NPM2Q86SE8 214 aaKnown RBP15.53■□□□□ 0.08
U2AF1-209ENST00000475639 WDR97A6NE52 1622 aa15.52■□□□□ 0.08
U2AF1-209ENST00000475639 FAM50AQ14320 339 aaKnown RBP15.52■□□□□ 0.08
U2AF1-209ENST00000475639 UPF2Q9HAU5 1272 aaKnown RBP15.52■□□□□ 0.08
U2AF1-209ENST00000475639 MAPKBP1O60336 1514 aa15.52■□□□□ 0.07
U2AF1-209ENST00000475639 ZNF326Q5BKZ1 582 aaKnown RBP15.52■□□□□ 0.07
U2AF1-209ENST00000475639 PPP4R2Q9NY27 417 aa15.49■□□□□ 0.07
U2AF1-209ENST00000475639 CDK11BP21127 795 aaKnown RBP15.48■□□□□ 0.07
U2AF1-209ENST00000475639 RRBP1Q9P2E9 1410 aaKnown RBP15.47■□□□□ 0.07
U2AF1-209ENST00000475639 HIRIP3Q9BW71 556 aaPredicted RBP15.47■□□□□ 0.07
U2AF1-209ENST00000475639 SMARCA2P51531 1590 aa15.45■□□□□ 0.06
U2AF1-209ENST00000475639 HNRNPUQ00839 825 aaKnown RBP eCLIP15.45■□□□□ 0.06
U2AF1-209ENST00000475639 KANK4Q5T7N3 995 aaPredicted RBP15.45■□□□□ 0.06
U2AF1-209ENST00000475639 TOP2AP11388 1531 aaKnown RBP15.45■□□□□ 0.06
U2AF1-209ENST00000475639 B4GALNT3Q6L9W6 998 aa15.44■□□□□ 0.06
U2AF1-209ENST00000475639 BAZ1BQ9UIG0 1483 aaKnown RBP15.43■□□□□ 0.06
U2AF1-209ENST00000475639 RAPGEF2Q9Y4G8 1499 aa15.41■□□□□ 0.06
U2AF1-209ENST00000475639 RAB3GAP2Q9H2M9 1393 aa15.4■□□□□ 0.06
U2AF1-209ENST00000475639 IPO9Q96P70 1041 aaKnown RBP15.39■□□□□ 0.05
U2AF1-209ENST00000475639 SIN3AQ96ST3 1273 aa15.38■□□□□ 0.05
U2AF1-209ENST00000475639 WASHC2AQ641Q2 1341 aa15.37■□□□□ 0.05
U2AF1-209ENST00000475639 CCNB3Q8WWL7 1395 aa15.37■□□□□ 0.05
U2AF1-209ENST00000475639 TNNT2P45379 298 aaPredicted RBP15.34■□□□□ 0.05
U2AF1-209ENST00000475639 ARAP1Q96P48 1450 aa15.32■□□□□ 0.04
U2AF1-209ENST00000475639 C11orf95C9JLR9 678 aaPredicted RBP15.31■□□□□ 0.04
U2AF1-209ENST00000475639 SYNJ1O43426 1573 aa15.29■□□□□ 0.04
U2AF1-209ENST00000475639 WASHC2CQ9Y4E1 1318 aa15.28■□□□□ 0.04
U2AF1-209ENST00000475639 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.28■□□□□ 0.04
U2AF1-209ENST00000475639 ARXQ96QS3 562 aa15.26■□□□□ 0.03
U2AF1-209ENST00000475639 TIMELESSQ9UNS1 1208 aa15.26■□□□□ 0.03
U2AF1-209ENST00000475639 SETD5Q9C0A6 1442 aa15.24■□□□□ 0.03
U2AF1-209ENST00000475639 BRPF3Q9ULD4 1205 aa15.24■□□□□ 0.03
U2AF1-209ENST00000475639 PKNOX2Q96KN3 472 aa15.23■□□□□ 0.03
U2AF1-209ENST00000475639 USP35Q9P2H5 1018 aa15.21■□□□□ 0.03
U2AF1-209ENST00000475639 TRIM44Q96DX7 344 aaPredicted RBP15.2■□□□□ 0.02
U2AF1-209ENST00000475639 CCDC184Q52MB2 194 aa15.2■□□□□ 0.02
U2AF1-209ENST00000475639 LAS1LQ9Y4W2 734 aaKnown RBP15.2■□□□□ 0.02
U2AF1-209ENST00000475639 SMARCA4P51532 1647 aa15.19■□□□□ 0.02
U2AF1-209ENST00000475639 NCAPD3P42695 1498 aa15.17■□□□□ 0.02
U2AF1-209ENST00000475639 ZBED9Q6R2W3 1325 aa15.15■□□□□ 0.02
U2AF1-209ENST00000475639 NCLP19338 710 aaKnown RBP15.15■□□□□ 0.02
U2AF1-209ENST00000475639 PEG3Q9GZU2 1588 aa15.13■□□□□ 0.01
U2AF1-209ENST00000475639 FAM9BQ8IZU0 186 aa15.11■□□□□ 0.01
U2AF1-209ENST00000475639 AKNAQ7Z591 1439 aa15.11■□□□□ 0.01
U2AF1-209ENST00000475639 GOLGA6L22H0YM25 854 aa15.1■□□□□ 0.01
U2AF1-209ENST00000475639 ERICH3Q5RHP9 1530 aa15.1■□□□□ 0.01
U2AF1-209ENST00000475639 GSE1Q14687 1217 aa15.09■□□□□ 0.01
U2AF1-209ENST00000475639 ESF1Q9H501 851 aaKnown RBP15.09■□□□□ 0.01
U2AF1-209ENST00000475639 TONSLQ96HA7 1378 aa15.08■□□□□ 0.01
U2AF1-209ENST00000475639 ZRSR1Q15695 479 aaKnown RBP15.08■□□□□ 0
U2AF1-209ENST00000475639 RSPH6AQ9H0K4 717 aa15.08■□□□□ 0
U2AF1-209ENST00000475639 PRXQ9BXM0 1461 aa15.07■□□□□ 0
U2AF1-209ENST00000475639 PPM1GO15355 546 aaPredicted RBP15.07■□□□□ 0
U2AF1-209ENST00000475639 MYH16Q9H6N6 1097 aa15.05■□□□□ 0
U2AF1-209ENST00000475639 PTMAP06454 111 aaKnown RBP15.05■□□□□ 0
U2AF1-209ENST00000475639 FHAD1B1AJZ9 1412 aa15.05■□□□□ -0
U2AF1-209ENST00000475639 RNF123Q5XPI4 1314 aa15.05■□□□□ -0
U2AF1-209ENST00000475639 BECN1Q14457 450 aa15.04■□□□□ -0
U2AF1-209ENST00000475639 DNTTIP2Q5QJE6 756 aaKnown RBP15.04■□□□□ -0
U2AF1-209ENST00000475639 MRS2Q9HD23 443 aa15.03■□□□□ -0
U2AF1-209ENST00000475639 SMG6Q86US8 1419 aaKnown RBP15.03■□□□□ -0
U2AF1-209ENST00000475639 PHLDB1Q86UU1 1377 aa15.03■□□□□ -0
U2AF1-209ENST00000475639 ARHGAP35Q9NRY4 1499 aa15.03■□□□□ -0
U2AF1-209ENST00000475639 TMC1Q8TDI8 760 aa15.02■□□□□ -0
U2AF1-209ENST00000475639 PRKRIP1Q9H875 184 aaPredicted RBP15.02■□□□□ -0
U2AF1-209ENST00000475639 FRAT1Q92837 279 aaPredicted RBP15.02□□□□□ -0.01
U2AF1-209ENST00000475639 NCOA2Q15596 1464 aa15.01□□□□□ -0.01
U2AF1-209ENST00000475639 CNTLNQ9NXG0 1405 aa15.01□□□□□ -0.01
U2AF1-209ENST00000475639 STAG3Q9UJ98 1225 aa15.01□□□□□ -0.01
U2AF1-209ENST00000475639 TIAM1Q13009 1591 aa15□□□□□ -0.01
U2AF1-209ENST00000475639 KDM5BQ9UGL1 1544 aa15□□□□□ -0.01
U2AF1-209ENST00000475639 PDE4AP27815 886 aa14.99□□□□□ -0.01
U2AF1-209ENST00000475639 FAM43AQ8N2R8 423 aa14.98□□□□□ -0.01
U2AF1-209ENST00000475639 CHGAP10645 457 aaKnown RBP14.98□□□□□ -0.01
U2AF1-209ENST00000475639 HSPA5P11021 654 aaKnown RBP14.98□□□□□ -0.01
U2AF1-209ENST00000475639 NFKBIBQ15653 356 aa14.98□□□□□ -0.01
U2AF1-209ENST00000475639 DDRGK1Q96HY6 314 aa14.97□□□□□ -0.01
U2AF1-209ENST00000475639 NUDCQ9Y266 331 aa14.97□□□□□ -0.01
U2AF1-209ENST00000475639 BACH2Q9BYV9 841 aa14.96□□□□□ -0.01
U2AF1-209ENST00000475639 ZMYND15Q9H091 742 aa14.96□□□□□ -0.01
U2AF1-209ENST00000475639 FBLN2P98095 1184 aa14.96□□□□□ -0.01
U2AF1-209ENST00000475639 WDR43Q15061 677 aaKnown RBP eCLIP14.96□□□□□ -0.02
U2AF1-209ENST00000475639 LRRC9Q6ZRR7 1453 aa14.95□□□□□ -0.02
U2AF1-209ENST00000475639 TCERG1O14776 1098 aaKnown RBP14.95□□□□□ -0.02
U2AF1-209ENST00000475639 MAP3K1Q13233 1512 aa14.94□□□□□ -0.02
U2AF1-209ENST00000475639 TOP2BQ02880 1626 aa14.94□□□□□ -0.02
U2AF1-209ENST00000475639 DCAF11Q8TEB1 546 aa14.94□□□□□ -0.02
U2AF1-209ENST00000475639 NRDCO43847 1150 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms