RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 TTBK1Q5TCY1 1321 aaPredicted RBP18.76■□□□□ 0.59
SYNE1-222ENST00000474655 ERCC6Q03468 1493 aa18.76■□□□□ 0.59
SYNE1-222ENST00000474655 ADAMTS12P58397 1594 aa18.75■□□□□ 0.59
SYNE1-222ENST00000474655 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.59
SYNE1-222ENST00000474655 GRIN2BQ13224 1484 aa18.74■□□□□ 0.59
SYNE1-222ENST00000474655 FHAD1B1AJZ9 1412 aa18.73■□□□□ 0.59
SYNE1-222ENST00000474655 SAMD9Q5K651 1589 aa18.71■□□□□ 0.59
SYNE1-222ENST00000474655 ZNF608Q9ULD9 1512 aaPredicted RBP18.69■□□□□ 0.58
SYNE1-222ENST00000474655 TIAM1Q13009 1591 aa18.68■□□□□ 0.58
SYNE1-222ENST00000474655 KANK4Q5T7N3 995 aaPredicted RBP18.66■□□□□ 0.58
SYNE1-222ENST00000474655 EIF4G3O43432 1585 aaKnown RBP18.66■□□□□ 0.58
SYNE1-222ENST00000474655 PCF11O94913 1555 aaKnown RBP18.65■□□□□ 0.58
SYNE1-222ENST00000474655 CFAP43Q8NDM7 1665 aa18.65■□□□□ 0.58
SYNE1-222ENST00000474655 FHOD3Q2V2M9 1422 aa18.64■□□□□ 0.57
SYNE1-222ENST00000474655 FYCO1Q9BQS8 1478 aa18.63■□□□□ 0.57
SYNE1-222ENST00000474655 CASKIN1Q8WXD9 1431 aa18.62■□□□□ 0.57
SYNE1-222ENST00000474655 FMN1Q68DA7 1419 aa18.61■□□□□ 0.57
SYNE1-222ENST00000474655 RRBP1Q9P2E9 1410 aaKnown RBP18.61■□□□□ 0.57
SYNE1-222ENST00000474655 IQGAP2Q13576 1575 aa18.6■□□□□ 0.57
SYNE1-222ENST00000474655 LRRC9Q6ZRR7 1453 aa18.58■□□□□ 0.57
SYNE1-222ENST00000474655 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.56
SYNE1-222ENST00000474655 MAGI1Q96QZ7 1491 aaPredicted RBP18.57■□□□□ 0.56
SYNE1-222ENST00000474655 P3H3Q8IVL6 736 aa18.56■□□□□ 0.56
SYNE1-222ENST00000474655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-222ENST00000474655 UGGT2Q9NYU1 1516 aa18.53■□□□□ 0.56
SYNE1-222ENST00000474655 GRIN2AQ12879 1464 aa18.53■□□□□ 0.56
SYNE1-222ENST00000474655 CCER1Q8TC90 406 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-222ENST00000474655 KIAA0586Q9BVV6 1533 aa18.51■□□□□ 0.55
SYNE1-222ENST00000474655 LRRIQ1Q96JM4 1722 aa18.5■□□□□ 0.55
SYNE1-222ENST00000474655 SYNJ2O15056 1496 aa18.48■□□□□ 0.55
SYNE1-222ENST00000474655 CCNB3Q8WWL7 1395 aa18.47■□□□□ 0.55
SYNE1-222ENST00000474655 HNRNPUL2Q1KMD3 747 aaKnown RBP18.47■□□□□ 0.55
SYNE1-222ENST00000474655 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
SYNE1-222ENST00000474655 PHLDB1Q86UU1 1377 aa18.41■□□□□ 0.54
SYNE1-222ENST00000474655 KIAA0556O60303 1618 aa18.41■□□□□ 0.54
SYNE1-222ENST00000474655 DISP1Q96F81 1524 aa18.4■□□□□ 0.54
SYNE1-222ENST00000474655 HECW1Q76N89 1606 aa18.4■□□□□ 0.54
SYNE1-222ENST00000474655 NUP160Q12769 1436 aa18.39■□□□□ 0.54
SYNE1-222ENST00000474655 CCDC18Q5T9S5 1454 aa18.39■□□□□ 0.53
SYNE1-222ENST00000474655 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
SYNE1-222ENST00000474655 CHMP7Q8WUX9 453 aaPredicted RBP18.36■□□□□ 0.53
SYNE1-222ENST00000474655 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.36■□□□□ 0.53
SYNE1-222ENST00000474655 EHBP1L1Q8N3D4 1523 aa18.35■□□□□ 0.53
SYNE1-222ENST00000474655 SUPT6HQ7KZ85 1726 aaKnown RBP18.32■□□□□ 0.52
SYNE1-222ENST00000474655 EPRSP07814 1512 aaKnown RBP18.32■□□□□ 0.52
SYNE1-222ENST00000474655 MTUS2Q5JR59 1369 aa18.32■□□□□ 0.52
SYNE1-222ENST00000474655 ARHGEF11O15085 1522 aa18.3■□□□□ 0.52
SYNE1-222ENST00000474655 MAGI3Q5TCQ9 1506 aa18.29■□□□□ 0.52
SYNE1-222ENST00000474655 CLSPNQ9HAW4 1339 aa18.28■□□□□ 0.52
SYNE1-222ENST00000474655 NCOA2Q15596 1464 aa18.27■□□□□ 0.52
SYNE1-222ENST00000474655 FGD6Q6ZV73 1430 aa18.27■□□□□ 0.52
SYNE1-222ENST00000474655 RAPGEF6Q8TEU7 1601 aa18.27■□□□□ 0.51
SYNE1-222ENST00000474655 DHX57Q6P158 1386 aaKnown RBP18.24■□□□□ 0.51
SYNE1-222ENST00000474655 MYOM3Q5VTT5 1437 aa18.23■□□□□ 0.51
SYNE1-222ENST00000474655 CARMIL2Q6F5E8 1435 aa18.23■□□□□ 0.51
SYNE1-222ENST00000474655 NUP153P49790 1475 aaKnown RBP18.22■□□□□ 0.51
SYNE1-222ENST00000474655 FBLN2P98095 1184 aa18.22■□□□□ 0.51
SYNE1-222ENST00000474655 JPH4Q96JJ6 628 aa18.22■□□□□ 0.51
SYNE1-222ENST00000474655 CHD1O14646 1710 aa18.22■□□□□ 0.51
SYNE1-222ENST00000474655 CDK13Q14004 1512 aaKnown RBP18.22■□□□□ 0.51
SYNE1-222ENST00000474655 SETD5Q9C0A6 1442 aa18.18■□□□□ 0.5
SYNE1-222ENST00000474655 FAM50AQ14320 339 aaKnown RBP18.18■□□□□ 0.5
SYNE1-222ENST00000474655 PTPN23Q9H3S7 1636 aa18.16■□□□□ 0.5
SYNE1-222ENST00000474655 RAB3GAP2Q9H2M9 1393 aa18.16■□□□□ 0.5
SYNE1-222ENST00000474655 TCOF1Q13428 1488 aaKnown RBP18.16■□□□□ 0.5
SYNE1-222ENST00000474655 ITGAEP38570 1179 aa18.15■□□□□ 0.5
SYNE1-222ENST00000474655 SHROOM2Q13796 1616 aa18.14■□□□□ 0.49
SYNE1-222ENST00000474655 ABCA8O94911 1581 aa18.14■□□□□ 0.49
SYNE1-222ENST00000474655 MIA2Q96PC5 1412 aa18.13■□□□□ 0.49
SYNE1-222ENST00000474655 PLB1Q6P1J6 1458 aa18.12■□□□□ 0.49
SYNE1-222ENST00000474655 ADCY10Q96PN6 1610 aa18.09■□□□□ 0.49
SYNE1-222ENST00000474655 AEBP2Q6ZN18 517 aaPredicted RBP18.09■□□□□ 0.49
SYNE1-222ENST00000474655 CDK11AQ9UQ88 783 aaPredicted RBP18.08■□□□□ 0.48
SYNE1-222ENST00000474655 PTPRKQ15262 1439 aa18.08■□□□□ 0.48
SYNE1-222ENST00000474655 PRG4Q92954 1404 aaPredicted RBP18.07■□□□□ 0.48
SYNE1-222ENST00000474655 HFM1A2PYH4 1435 aa18.07■□□□□ 0.48
SYNE1-222ENST00000474655 TROQ12816 1431 aaPredicted RBP18.07■□□□□ 0.48
SYNE1-222ENST00000474655 MAPKBP1O60336 1514 aa18.05■□□□□ 0.48
SYNE1-222ENST00000474655 AKNAQ7Z591 1439 aa18.01■□□□□ 0.47
SYNE1-222ENST00000474655 ITSN2Q9NZM3 1697 aa18.01■□□□□ 0.47
SYNE1-222ENST00000474655 CLASP1Q7Z460 1538 aa18.01■□□□□ 0.47
SYNE1-222ENST00000474655 ARID3CA6NKF2 412 aa18.01■□□□□ 0.47
SYNE1-222ENST00000474655 NAIPQ13075 1403 aa18■□□□□ 0.47
SYNE1-222ENST00000474655 ATP10BO94823 1461 aa18■□□□□ 0.47
SYNE1-222ENST00000474655 GCC2Q8IWJ2 1684 aa18■□□□□ 0.47
SYNE1-222ENST00000474655 PTPRGP23470 1445 aa18■□□□□ 0.47
SYNE1-222ENST00000474655 KIF14Q15058 1648 aa17.98■□□□□ 0.47
SYNE1-222ENST00000474655 DNMT1P26358 1616 aaKnown RBP17.97■□□□□ 0.47
SYNE1-222ENST00000474655 GPATCH8Q9UKJ3 1502 aaKnown RBP17.94■□□□□ 0.46
SYNE1-222ENST00000474655 UACAQ9BZF9 1416 aa17.94■□□□□ 0.46
SYNE1-222ENST00000474655 ZNF316A6NFI3 1004 aaPredicted RBP17.94■□□□□ 0.46
SYNE1-222ENST00000474655 ERCC6L2Q5T890 1561 aa17.92■□□□□ 0.46
SYNE1-222ENST00000474655 ABCC10Q5T3U5 1492 aa17.92■□□□□ 0.46
SYNE1-222ENST00000474655 CDC42BPAQ5VT25 1732 aa17.92■□□□□ 0.46
SYNE1-222ENST00000474655 DAPK1P53355 1430 aa17.91■□□□□ 0.46
SYNE1-222ENST00000474655 ROCK1Q13464 1354 aa17.91■□□□□ 0.46
SYNE1-222ENST00000474655 PLEKHD1A6NEE1 506 aa17.91■□□□□ 0.46
SYNE1-222ENST00000474655 ABCC5O15440 1437 aa17.89■□□□□ 0.45
SYNE1-222ENST00000474655 ABCC2Q92887 1545 aa17.88■□□□□ 0.45
SYNE1-222ENST00000474655 CAMSAP2Q08AD1 1489 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms