RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CHIC1Q5VXU3 224 aa11.9□□□□□ -0.5
COL6A3-210ENST00000473258 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
COL6A3-210ENST00000473258 SUPT16HQ9Y5B9 1047 aaKnown RBP11.87□□□□□ -0.51
COL6A3-210ENST00000473258 TRIM52Q96A61 297 aa11.85□□□□□ -0.51
COL6A3-210ENST00000473258 IRX6P78412 446 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-210ENST00000473258 NISCHQ9Y2I1 1504 aa11.85□□□□□ -0.51
COL6A3-210ENST00000473258 MIER1Q8N108 512 aa11.84□□□□□ -0.51
COL6A3-210ENST00000473258 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-210ENST00000473258 SLC4A1APQ9BWU0 796 aaKnown RBP11.82□□□□□ -0.52
COL6A3-210ENST00000473258 TSHZ2Q9NRE2 1034 aa11.78□□□□□ -0.52
COL6A3-210ENST00000473258 UBE2Q2Q8WVN8 375 aa11.77□□□□□ -0.52
COL6A3-210ENST00000473258 SETQ01105 290 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-210ENST00000473258 PPP4R2Q9NY27 417 aa11.74□□□□□ -0.53
COL6A3-210ENST00000473258 FAM9BQ8IZU0 186 aa11.73□□□□□ -0.53
COL6A3-210ENST00000473258 GOLGA6L3A6NEY3 463 aa11.73□□□□□ -0.53
COL6A3-210ENST00000473258 NRDCO43847 1150 aa11.73□□□□□ -0.53
COL6A3-210ENST00000473258 SALL2Q9Y467 1007 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-210ENST00000473258 PLCB2Q00722 1185 aa11.72□□□□□ -0.53
COL6A3-210ENST00000473258 ZNF771Q7L3S4 317 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-210ENST00000473258 HAP1P54257 671 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-210ENST00000473258 GOLGA6L6A8MZA4 724 aa11.71□□□□□ -0.54
COL6A3-210ENST00000473258 KIAA2012Q0VF49 1180 aa11.7□□□□□ -0.54
COL6A3-210ENST00000473258 DDX10Q13206 875 aaKnown RBP11.7□□□□□ -0.54
COL6A3-210ENST00000473258 GOLGA6L1Q8N7Z2 621 aa11.69□□□□□ -0.54
COL6A3-210ENST00000473258 USP35Q9P2H5 1018 aa11.69□□□□□ -0.54
COL6A3-210ENST00000473258 ZRSR1Q15695 479 aaKnown RBP11.67□□□□□ -0.54
COL6A3-210ENST00000473258 PATL2C9JE40 543 aaKnown RBP11.65□□□□□ -0.54
COL6A3-210ENST00000473258 MAP7D2Q96T17 732 aa11.64□□□□□ -0.55
COL6A3-210ENST00000473258 PDIA4P13667 645 aaKnown RBP11.63□□□□□ -0.55
COL6A3-210ENST00000473258 MYH16Q9H6N6 1097 aa11.62□□□□□ -0.55
COL6A3-210ENST00000473258 FAM13BQ9NYF5 915 aa11.61□□□□□ -0.55
COL6A3-210ENST00000473258 MTERF4Q7Z6M4 381 aaKnown RBP11.6□□□□□ -0.55
COL6A3-210ENST00000473258 GSE1Q14687 1217 aa11.59□□□□□ -0.55
COL6A3-210ENST00000473258 IPO9Q96P70 1041 aaKnown RBP11.59□□□□□ -0.55
COL6A3-210ENST00000473258 ZBTB7CA1YPR0 619 aa11.58□□□□□ -0.56
COL6A3-210ENST00000473258 MRS2Q9HD23 443 aa11.58□□□□□ -0.56
COL6A3-210ENST00000473258 C14orf37Q86TY3 774 aa11.57□□□□□ -0.56
COL6A3-210ENST00000473258 CCDC66A2RUB6 948 aa11.57□□□□□ -0.56
COL6A3-210ENST00000473258 FAM50AQ14320 339 aaKnown RBP11.56□□□□□ -0.56
COL6A3-210ENST00000473258 NOM1Q5C9Z4 860 aaKnown RBP11.56□□□□□ -0.56
COL6A3-210ENST00000473258 GZF1Q9H116 711 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-210ENST00000473258 TMC1Q8TDI8 760 aa11.55□□□□□ -0.56
COL6A3-210ENST00000473258 RRP9O43818 475 aaKnown RBP11.55□□□□□ -0.56
COL6A3-210ENST00000473258 B4GALNT3Q6L9W6 998 aa11.54□□□□□ -0.56
COL6A3-210ENST00000473258 DRC7Q8IY82 874 aa11.54□□□□□ -0.56
COL6A3-210ENST00000473258 STK11IPQ8N1F8 1099 aa11.54□□□□□ -0.56
COL6A3-210ENST00000473258 HSP90AB1P08238 724 aaKnown RBP11.53□□□□□ -0.56
COL6A3-210ENST00000473258 TAF7LQ5H9L4 462 aa11.53□□□□□ -0.56
COL6A3-210ENST00000473258 AEBP2Q6ZN18 517 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-210ENST00000473258 ZMYND15Q9H091 742 aa11.52□□□□□ -0.57
COL6A3-210ENST00000473258 NOC3LQ8WTT2 800 aaKnown RBP11.51□□□□□ -0.57
COL6A3-210ENST00000473258 GBP4Q96PP9 640 aa11.51□□□□□ -0.57
COL6A3-210ENST00000473258 PLEKHG5O94827 1062 aa11.51□□□□□ -0.57
COL6A3-210ENST00000473258 TPRNQ4KMQ1 711 aa11.51□□□□□ -0.57
COL6A3-210ENST00000473258 TAF3Q5VWG9 929 aa11.5□□□□□ -0.57
COL6A3-210ENST00000473258 TEX35Q5T0J7 233 aa11.5□□□□□ -0.57
COL6A3-210ENST00000473258 HTATSF1O43719 755 aaKnown RBP11.5□□□□□ -0.57
COL6A3-210ENST00000473258 HSCBQ8IWL3 235 aa11.5□□□□□ -0.57
COL6A3-210ENST00000473258 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-210ENST00000473258 TPM2P07951 284 aa11.49□□□□□ -0.57
COL6A3-210ENST00000473258 GPS2Q13227 327 aa11.49□□□□□ -0.57
COL6A3-210ENST00000473258 FANCIQ9NVI1 1328 aa11.48□□□□□ -0.57
COL6A3-210ENST00000473258 FAM43AQ8N2R8 423 aa11.48□□□□□ -0.57
COL6A3-210ENST00000473258 HOMEZQ8IX15 550 aa11.47□□□□□ -0.57
COL6A3-210ENST00000473258 BBXQ8WY36 941 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-210ENST00000473258 DCAF1Q9Y4B6 1507 aa11.47□□□□□ -0.57
COL6A3-210ENST00000473258 RGS3P49796 1198 aa11.47□□□□□ -0.57
COL6A3-210ENST00000473258 WDR43Q15061 677 aaKnown RBP eCLIP11.46□□□□□ -0.57
COL6A3-210ENST00000473258 IL27Q8NEV9 243 aa11.46□□□□□ -0.58
COL6A3-210ENST00000473258 NEFHP12036 1026 aa11.45□□□□□ -0.58
COL6A3-210ENST00000473258 CSPP1Q1MSJ5 1256 aa11.45□□□□□ -0.58
COL6A3-210ENST00000473258 MEX3CQ5U5Q3 659 aaKnown RBP11.44□□□□□ -0.58
COL6A3-210ENST00000473258 HMGB1P09429 215 aaKnown RBP11.43□□□□□ -0.58
COL6A3-210ENST00000473258 AEBP1Q8IUX7 1158 aa11.43□□□□□ -0.58
COL6A3-210ENST00000473258 CWC15Q9P013 229 aaKnown RBP11.43□□□□□ -0.58
COL6A3-210ENST00000473258 SLKQ9H2G2 1235 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-210ENST00000473258 GOLGA6L4A6NEF3 574 aa11.42□□□□□ -0.58
COL6A3-210ENST00000473258 MAPK8IP2Q13387 824 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-210ENST00000473258 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
COL6A3-210ENST00000473258 TCERG1O14776 1098 aaKnown RBP11.4□□□□□ -0.58
COL6A3-210ENST00000473258 RDXP35241 583 aaKnown RBP11.4□□□□□ -0.58
COL6A3-210ENST00000473258 SYAP1Q96A49 352 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-210ENST00000473258 TONSLQ96HA7 1378 aa11.4□□□□□ -0.58
COL6A3-210ENST00000473258 ZNF526Q8TF50 670 aaPredicted RBP11.4□□□□□ -0.59
COL6A3-210ENST00000473258 CC2D1BQ5T0F9 858 aaKnown RBP11.39□□□□□ -0.59
COL6A3-210ENST00000473258 SPRYD3Q8NCJ5 442 aa11.39□□□□□ -0.59
COL6A3-210ENST00000473258 ESF1Q9H501 851 aaKnown RBP11.39□□□□□ -0.59
COL6A3-210ENST00000473258 DEF6Q9H4E7 631 aa11.37□□□□□ -0.59
COL6A3-210ENST00000473258 PAXIP1Q6ZW49 1069 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-210ENST00000473258 CALD1Q05682 793 aaKnown RBP11.36□□□□□ -0.59
COL6A3-210ENST00000473258 TSPYL1Q9H0U9 437 aa11.36□□□□□ -0.59
COL6A3-210ENST00000473258 FOXD1Q16676 465 aa11.36□□□□□ -0.59
COL6A3-210ENST00000473258 IRX3P78415 501 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-210ENST00000473258 RBM10P98175 930 aaKnown RBP11.35□□□□□ -0.59
COL6A3-210ENST00000473258 HSP90AB3PQ58FF7 597 aa11.34□□□□□ -0.59
COL6A3-210ENST00000473258 BRPF3Q9ULD4 1205 aa11.34□□□□□ -0.59
COL6A3-210ENST00000473258 R3HCC1Q9Y3T6 440 aaKnown RBP11.33□□□□□ -0.6
COL6A3-210ENST00000473258 DDX11L8A8MPP1 907 aa11.33□□□□□ -0.6
COL6A3-210ENST00000473258 RRP12Q5JTH9 1297 aaKnown RBP11.32□□□□□ -0.6
COL6A3-210ENST00000473258 H0YHG0 523 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms