RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 ARHGAP35Q9NRY4 1499 aa28.39■■■□□ 2.14
SMC4-211ENST00000469858 TRIM26Q12899 539 aaPredicted RBP28.39■■■□□ 2.14
SMC4-211ENST00000469858 SNAPC4Q5SXM2 1469 aa28.32■■■□□ 2.12
SMC4-211ENST00000469858 MAGI1Q96QZ7 1491 aaPredicted RBP28.23■■■□□ 2.11
SMC4-211ENST00000469858 TTBK1Q5TCY1 1321 aaPredicted RBP28.22■■■□□ 2.11
SMC4-211ENST00000469858 EFCAB5A4FU69 1503 aa28.21■■■□□ 2.11
SMC4-211ENST00000469858 APLP2Q06481 763 aa28.17■■■□□ 2.1
SMC4-211ENST00000469858 GRIN2AQ12879 1464 aa28.15■■■□□ 2.1
SMC4-211ENST00000469858 P3H3Q8IVL6 736 aa28.15■■■□□ 2.1
SMC4-211ENST00000469858 IQGAP2Q13576 1575 aa28.13■■■□□ 2.09
SMC4-211ENST00000469858 SYNJ2O15056 1496 aa28.13■■■□□ 2.09
SMC4-211ENST00000469858 FHOD3Q2V2M9 1422 aa28.12■■■□□ 2.09
SMC4-211ENST00000469858 SAMD9Q5K651 1589 aa28.11■■■□□ 2.09
SMC4-211ENST00000469858 CHMP7Q8WUX9 453 aaPredicted RBP28.08■■■□□ 2.09
SMC4-211ENST00000469858 FBLN2P98095 1184 aa28.04■■■□□ 2.08
SMC4-211ENST00000469858 PCF11O94913 1555 aaKnown RBP28.02■■■□□ 2.08
SMC4-211ENST00000469858 KIAA0586Q9BVV6 1533 aa28.01■■■□□ 2.07
SMC4-211ENST00000469858 CEP170Q5SW79 1584 aa28■■■□□ 2.07
SMC4-211ENST00000469858 UGGT2Q9NYU1 1516 aa27.95■■■□□ 2.07
SMC4-211ENST00000469858 FMN1Q68DA7 1419 aa27.95■■■□□ 2.07
SMC4-211ENST00000469858 FYCO1Q9BQS8 1478 aa27.92■■■□□ 2.06
SMC4-211ENST00000469858 TIAM1Q13009 1591 aa27.91■■■□□ 2.06
SMC4-211ENST00000469858 NUP160Q12769 1436 aa27.91■■■□□ 2.06
SMC4-211ENST00000469858 KANK4Q5T7N3 995 aaPredicted RBP27.91■■■□□ 2.06
SMC4-211ENST00000469858 CASKIN1Q8WXD9 1431 aa27.9■■■□□ 2.06
SMC4-211ENST00000469858 CHD1O14646 1710 aa27.89■■■□□ 2.05
SMC4-211ENST00000469858 MAP3K1Q13233 1512 aa27.88■■■□□ 2.05
SMC4-211ENST00000469858 ATP1B4Q9UN42 357 aaPredicted RBP27.88■■■□□ 2.05
SMC4-211ENST00000469858 CFAP43Q8NDM7 1665 aa27.87■■■□□ 2.05
SMC4-211ENST00000469858 KIAA0556O60303 1618 aa27.84■■■□□ 2.05
SMC4-211ENST00000469858 DISP1Q96F81 1524 aa27.82■■■□□ 2.04
SMC4-211ENST00000469858 LRRIQ1Q96JM4 1722 aa27.77■■■□□ 2.04
SMC4-211ENST00000469858 LRRC9Q6ZRR7 1453 aa27.76■■■□□ 2.03
SMC4-211ENST00000469858 JPH4Q96JJ6 628 aa27.71■■■□□ 2.03
SMC4-211ENST00000469858 HECW1Q76N89 1606 aa27.7■■■□□ 2.02
SMC4-211ENST00000469858 CARMIL2Q6F5E8 1435 aa27.67■■■□□ 2.02
SMC4-211ENST00000469858 HRCP23327 699 aa27.64■■■□□ 2.01
SMC4-211ENST00000469858 CCDC18Q5T9S5 1454 aa27.61■■■□□ 2.01
SMC4-211ENST00000469858 RAPGEF6Q8TEU7 1601 aa27.59■■■□□ 2.01
SMC4-211ENST00000469858 RRBP1Q9P2E9 1410 aaKnown RBP27.58■■■□□ 2.01
SMC4-211ENST00000469858 EPRSP07814 1512 aaKnown RBP27.57■■■□□ 2
SMC4-211ENST00000469858 MTUS2Q5JR59 1369 aa27.57■■■□□ 2
SMC4-211ENST00000469858 PRG4Q92954 1404 aaPredicted RBP27.55■■■□□ 2
SMC4-211ENST00000469858 SHROOM2Q13796 1616 aa27.54■■■□□ 2
SMC4-211ENST00000469858 CDK13Q14004 1512 aaKnown RBP27.54■■■□□ 2
SMC4-211ENST00000469858 HNRNPUL2Q1KMD3 747 aaKnown RBP27.53■■■□□ 2
SMC4-211ENST00000469858 PHLDB1Q86UU1 1377 aa27.52■■■□□ 2
SMC4-211ENST00000469858 EHBP1L1Q8N3D4 1523 aa27.52■■■□□ 2
SMC4-211ENST00000469858 CCNB3Q8WWL7 1395 aa27.51■■□□□ 1.99
SMC4-211ENST00000469858 ARID3CA6NKF2 412 aa27.5■■□□□ 1.99
SMC4-211ENST00000469858 NUP153P49790 1475 aaKnown RBP27.5■■□□□ 1.99
SMC4-211ENST00000469858 PLB1Q6P1J6 1458 aa27.49■■□□□ 1.99
SMC4-211ENST00000469858 MAGI3Q5TCQ9 1506 aa27.49■■□□□ 1.99
SMC4-211ENST00000469858 CLASP1Q7Z460 1538 aa27.48■■□□□ 1.99
SMC4-211ENST00000469858 SUPT6HQ7KZ85 1726 aaKnown RBP27.47■■□□□ 1.99
SMC4-211ENST00000469858 NCOA2Q15596 1464 aa27.41■■□□□ 1.98
SMC4-211ENST00000469858 ABCA8O94911 1581 aa27.41■■□□□ 1.98
SMC4-211ENST00000469858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.39■■□□□ 1.98
SMC4-211ENST00000469858 ERCC6L2Q5T890 1561 aa27.39■■□□□ 1.98
SMC4-211ENST00000469858 PTPRGP23470 1445 aa27.38■■□□□ 1.97
SMC4-211ENST00000469858 ARHGEF11O15085 1522 aa27.34■■□□□ 1.97
SMC4-211ENST00000469858 FGD6Q6ZV73 1430 aa27.32■■□□□ 1.96
SMC4-211ENST00000469858 FAM50AQ14320 339 aaKnown RBP27.31■■□□□ 1.96
SMC4-211ENST00000469858 MYOM3Q5VTT5 1437 aa27.3■■□□□ 1.96
SMC4-211ENST00000469858 ITGAEP38570 1179 aa27.3■■□□□ 1.96
SMC4-211ENST00000469858 CCER1Q8TC90 406 aaPredicted RBP27.3■■□□□ 1.96
SMC4-211ENST00000469858 CDK11AQ9UQ88 783 aaPredicted RBP27.29■■□□□ 1.96
SMC4-211ENST00000469858 ZEB1P37275 1124 aaPredicted RBP27.25■■□□□ 1.95
SMC4-211ENST00000469858 ATP10BO94823 1461 aa27.23■■□□□ 1.95
SMC4-211ENST00000469858 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.23■■□□□ 1.953e-9■■■■■ 72.1
SMC4-211ENST00000469858 TROQ12816 1431 aaPredicted RBP27.22■■□□□ 1.95
SMC4-211ENST00000469858 UACAQ9BZF9 1416 aa27.22■■□□□ 1.95
SMC4-211ENST00000469858 PTPN23Q9H3S7 1636 aa27.2■■□□□ 1.94
SMC4-211ENST00000469858 ADCY10Q96PN6 1610 aa27.17■■□□□ 1.94
SMC4-211ENST00000469858 OSCARQ8IYS5 282 aa27.17■■□□□ 1.94
SMC4-211ENST00000469858 ABCC2Q92887 1545 aa27.15■■□□□ 1.94
SMC4-211ENST00000469858 KIF14Q15058 1648 aa27.15■■□□□ 1.94
SMC4-211ENST00000469858 PLEKHD1A6NEE1 506 aa27.12■■□□□ 1.93
SMC4-211ENST00000469858 MIA2Q96PC5 1412 aa27.11■■□□□ 1.93
SMC4-211ENST00000469858 TCOF1Q13428 1488 aaKnown RBP27.1■■□□□ 1.93
SMC4-211ENST00000469858 ITSN2Q9NZM3 1697 aa27.07■■□□□ 1.92
SMC4-211ENST00000469858 UHRF1BP1LA0JNW5 1464 aa27.04■■□□□ 1.92
SMC4-211ENST00000469858 SETD5Q9C0A6 1442 aa27.02■■□□□ 1.92
SMC4-211ENST00000469858 RAB3GAP2Q9H2M9 1393 aa27.01■■□□□ 1.91
SMC4-211ENST00000469858 PTPRKQ15262 1439 aa27.01■■□□□ 1.91
SMC4-211ENST00000469858 ZCCHC11Q5TAX3 1644 aaKnown RBP27■■□□□ 1.91
SMC4-211ENST00000469858 GPATCH8Q9UKJ3 1502 aaKnown RBP27■■□□□ 1.91
SMC4-211ENST00000469858 CDC42BPAQ5VT25 1732 aa26.98■■□□□ 1.91
SMC4-211ENST00000469858 ABCC10Q5T3U5 1492 aa26.98■■□□□ 1.91
SMC4-211ENST00000469858 KDM5BQ9UGL1 1544 aa26.95■■□□□ 1.91
SMC4-211ENST00000469858 DHX57Q6P158 1386 aaKnown RBP26.95■■□□□ 1.9
SMC4-211ENST00000469858 CFDP1Q9UEE9 299 aaPredicted RBP26.94■■□□□ 1.9
SMC4-211ENST00000469858 ZNF644Q9H582 1327 aaPredicted RBP26.92■■□□□ 1.9
SMC4-211ENST00000469858 CAMSAP2Q08AD1 1489 aa26.91■■□□□ 1.9
SMC4-211ENST00000469858 DNMT1P26358 1616 aaKnown RBP26.9■■□□□ 1.9
SMC4-211ENST00000469858 HFM1A2PYH4 1435 aa26.89■■□□□ 1.89
SMC4-211ENST00000469858 ZNF777Q9ULD5 760 aaPredicted RBP26.87■■□□□ 1.89
SMC4-211ENST00000469858 DAPK1P53355 1430 aa26.86■■□□□ 1.89
SMC4-211ENST00000469858 CHIC2Q9UKJ5 165 aa26.86■■□□□ 1.89
SMC4-211ENST00000469858 TTC37Q6PGP7 1564 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms