RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
HDAC3-205ENST00000469550 TRIM26Q12899 539 aaPredicted RBP15.27■□□□□ 0.04
HDAC3-205ENST00000469550 PRG4Q92954 1404 aaPredicted RBP15.24■□□□□ 0.03
HDAC3-205ENST00000469550 CUL7Q14999 1698 aa15.22■□□□□ 0.03
HDAC3-205ENST00000469550 KIF13AQ9H1H9 1805 aa15.2■□□□□ 0.02
HDAC3-205ENST00000469550 JPH4Q96JJ6 628 aa15.19■□□□□ 0.02
HDAC3-205ENST00000469550 LOC105371045A0A1W2PR82 267 aa15.18■□□□□ 0.02
HDAC3-205ENST00000469550 ZEB1P37275 1124 aaPredicted RBP15.18■□□□□ 0.02
HDAC3-205ENST00000469550 KIF27Q86VH2 1401 aa15.18■□□□□ 0.02
HDAC3-205ENST00000469550 PELP1Q8IZL8 1130 aaKnown RBP15.18■□□□□ 0.02
HDAC3-205ENST00000469550 KIAA0586Q9BVV6 1533 aa15.17■□□□□ 0.02
HDAC3-205ENST00000469550 IGF1RP08069 1367 aa15.16■□□□□ 0.02
HDAC3-205ENST00000469550 MAPKBP1O60336 1514 aa15.14■□□□□ 0.01
HDAC3-205ENST00000469550 ADCY10Q96PN6 1610 aa15.12■□□□□ 0.01
HDAC3-205ENST00000469550 ABCC10Q5T3U5 1492 aa15.09■□□□□ 0.01
HDAC3-205ENST00000469550 DIP2BQ9P265 1576 aa15.08■□□□□ 0
HDAC3-205ENST00000469550 CARMIL1Q5VZK9 1371 aa15.06■□□□□ 0
HDAC3-205ENST00000469550 IQGAP2Q13576 1575 aa15.02■□□□□ -0
HDAC3-205ENST00000469550 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
HDAC3-205ENST00000469550 CARMIL2Q6F5E8 1435 aa14.99□□□□□ -0.01
HDAC3-205ENST00000469550 AEBP2Q6ZN18 517 aaPredicted RBP14.99□□□□□ -0.01
HDAC3-205ENST00000469550 PTPRGP23470 1445 aa14.99□□□□□ -0.01
HDAC3-205ENST00000469550 TNIKQ9UKE5 1360 aa14.98□□□□□ -0.01
HDAC3-205ENST00000469550 FAM69CQ0P6D2 419 aa14.98□□□□□ -0.01
HDAC3-205ENST00000469550 UHRF1BP1LA0JNW5 1464 aa14.97□□□□□ -0.01
HDAC3-205ENST00000469550 ABCC2Q92887 1545 aa14.96□□□□□ -0.01
HDAC3-205ENST00000469550 UGGT2Q9NYU1 1516 aa14.95□□□□□ -0.02
HDAC3-205ENST00000469550 DISP1Q96F81 1524 aa14.95□□□□□ -0.02
HDAC3-205ENST00000469550 RAPGEF2Q9Y4G8 1499 aa14.94□□□□□ -0.02
HDAC3-205ENST00000469550 GLI2P10070 1586 aa14.93□□□□□ -0.02
HDAC3-205ENST00000469550 KDM6BO15054 1643 aa14.93□□□□□ -0.02
HDAC3-205ENST00000469550 PLB1Q6P1J6 1458 aa14.91□□□□□ -0.02
HDAC3-205ENST00000469550 TSPOAP1O95153 1857 aa14.9□□□□□ -0.02
HDAC3-205ENST00000469550 KIAA0556O60303 1618 aa14.9□□□□□ -0.02
HDAC3-205ENST00000469550 UACAQ9BZF9 1416 aa14.9□□□□□ -0.02
HDAC3-205ENST00000469550 PPRC1Q5VV67 1664 aaKnown RBP14.88□□□□□ -0.03
HDAC3-205ENST00000469550 CTTNBP2Q8WZ74 1663 aa14.88□□□□□ -0.03
HDAC3-205ENST00000469550 KDM5BQ9UGL1 1544 aa14.88□□□□□ -0.03
HDAC3-205ENST00000469550 ASXL2Q76L83 1435 aa14.88□□□□□ -0.03
HDAC3-205ENST00000469550 ZCCHC11Q5TAX3 1644 aaKnown RBP14.84□□□□□ -0.03
HDAC3-205ENST00000469550 MAP3K4Q9Y6R4 1608 aa14.84□□□□□ -0.03
HDAC3-205ENST00000469550 SCAF1Q9H7N4 1312 aaKnown RBP14.83□□□□□ -0.03
HDAC3-205ENST00000469550 EPRSP07814 1512 aaKnown RBP14.82□□□□□ -0.04
HDAC3-205ENST00000469550 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
HDAC3-205ENST00000469550 PRXQ9BXM0 1461 aa14.8□□□□□ -0.04
HDAC3-205ENST00000469550 TTBK1Q5TCY1 1321 aaPredicted RBP14.78□□□□□ -0.04
HDAC3-205ENST00000469550 ABCA8O94911 1581 aa14.77□□□□□ -0.04
HDAC3-205ENST00000469550 TEX14Q8IWB6 1497 aa14.77□□□□□ -0.05
HDAC3-205ENST00000469550 WDR7Q9Y4E6 1490 aa14.75□□□□□ -0.05
HDAC3-205ENST00000469550 KDM4FA0A1W2PPD8 638 aa14.74□□□□□ -0.05
HDAC3-205ENST00000469550 CFAP43Q8NDM7 1665 aa14.73□□□□□ -0.05
HDAC3-205ENST00000469550 COL17A1Q9UMD9 1497 aaPredicted RBP14.72□□□□□ -0.05
HDAC3-205ENST00000469550 MAGI3Q5TCQ9 1506 aa14.7□□□□□ -0.06
HDAC3-205ENST00000469550 SAMD9Q5K651 1589 aa14.67□□□□□ -0.06
HDAC3-205ENST00000469550 ADGRL1O94910 1474 aa14.65□□□□□ -0.06
HDAC3-205ENST00000469550 CD109Q6YHK3 1445 aa14.63□□□□□ -0.07
HDAC3-205ENST00000469550 ACIN1Q9UKV3 1341 aaKnown RBP14.63□□□□□ -0.07
HDAC3-205ENST00000469550 EEA1Q15075 1411 aa14.63□□□□□ -0.07
HDAC3-205ENST00000469550 FAM9AQ8IZU1 332 aaPredicted RBP14.62□□□□□ -0.07
HDAC3-205ENST00000469550 ATP10BO94823 1461 aa14.6□□□□□ -0.07
HDAC3-205ENST00000469550 ABCA9Q8IUA7 1624 aa14.6□□□□□ -0.07
HDAC3-205ENST00000469550 MYT1Q01538 1121 aa14.59□□□□□ -0.07
HDAC3-205ENST00000469550 CSRNP3Q8WYN3 585 aa14.59□□□□□ -0.07
HDAC3-205ENST00000469550 RAPGEF6Q8TEU7 1601 aa14.59□□□□□ -0.07
HDAC3-205ENST00000469550 ARAP3Q8WWN8 1544 aa14.58□□□□□ -0.07
HDAC3-205ENST00000469550 PHLDB1Q86UU1 1377 aa14.55□□□□□ -0.08
HDAC3-205ENST00000469550 KCNH8Q96L42 1107 aa14.54□□□□□ -0.08
HDAC3-205ENST00000469550 KIF21BO75037 1637 aa14.53□□□□□ -0.08
HDAC3-205ENST00000469550 NUP153P49790 1475 aaKnown RBP14.52□□□□□ -0.09
HDAC3-205ENST00000469550 EFCAB5A4FU69 1503 aa14.51□□□□□ -0.09
HDAC3-205ENST00000469550 NEO1Q92859 1461 aa14.51□□□□□ -0.09
HDAC3-205ENST00000469550 NEUROD1Q13562 356 aa14.51□□□□□ -0.09
HDAC3-205ENST00000469550 CENPBP07199 599 aaPredicted RBP14.5□□□□□ -0.09
HDAC3-205ENST00000469550 P3H3Q8IVL6 736 aa14.5□□□□□ -0.09
HDAC3-205ENST00000469550 CCER1Q8TC90 406 aaPredicted RBP14.49□□□□□ -0.09
HDAC3-205ENST00000469550 HECW2Q9P2P5 1572 aa14.48□□□□□ -0.09
HDAC3-205ENST00000469550 FHOD3Q2V2M9 1422 aa14.47□□□□□ -0.09
HDAC3-205ENST00000469550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.46□□□□□ -0.09
HDAC3-205ENST00000469550 FRMPD1Q5SYB0 1578 aa14.46□□□□□ -0.09
HDAC3-205ENST00000469550 DIEXFQ68CQ4 756 aaKnown RBP14.45□□□□□ -0.1
HDAC3-205ENST00000469550 ARID3CA6NKF2 412 aa14.45□□□□□ -0.1
HDAC3-205ENST00000469550 ADAMTSL3P82987 1691 aa14.44□□□□□ -0.1
HDAC3-205ENST00000469550 CFAP74Q9C0B2 1584 aa14.43□□□□□ -0.1
HDAC3-205ENST00000469550 RICTORQ6R327 1708 aa14.41□□□□□ -0.1
HDAC3-205ENST00000469550 GTF3C3Q9Y5Q9 886 aa14.4□□□□□ -0.1
HDAC3-205ENST00000469550 ARHGEF40Q8TER5 1519 aa14.4□□□□□ -0.1
HDAC3-205ENST00000469550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.39□□□□□ -0.11
HDAC3-205ENST00000469550 BCORL1Q5H9F3 1711 aa14.39□□□□□ -0.11
HDAC3-205ENST00000469550 TTC37Q6PGP7 1564 aa14.38□□□□□ -0.11
HDAC3-205ENST00000469550 ZMYM4Q5VZL5 1548 aa14.38□□□□□ -0.11
HDAC3-205ENST00000469550 EHMT2Q96KQ7 1210 aa14.38□□□□□ -0.11
HDAC3-205ENST00000469550 PLEKHD1A6NEE1 506 aa14.37□□□□□ -0.11
HDAC3-205ENST00000469550 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
HDAC3-205ENST00000469550 DENND4BO75064 1496 aaPredicted RBP14.36□□□□□ -0.11
HDAC3-205ENST00000469550 FANCAO15360 1455 aa14.36□□□□□ -0.11
HDAC3-205ENST00000469550 RAPGEF3O95398 923 aa14.36□□□□□ -0.11
HDAC3-205ENST00000469550 AKNAQ7Z591 1439 aa14.35□□□□□ -0.11
HDAC3-205ENST00000469550 PTPRMP28827 1452 aa14.35□□□□□ -0.11
HDAC3-205ENST00000469550 HECW1Q76N89 1606 aa14.35□□□□□ -0.11
HDAC3-205ENST00000469550 CDK13Q14004 1512 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms