RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 MAGI1Q96QZ7 1491 aaPredicted RBP29.65■■■□□ 2.34
SMC4-209ENST00000468653 PPARGC1BQ86YN6 1023 aaKnown RBP29.62■■■□□ 2.33
SMC4-209ENST00000468653 TRIM26Q12899 539 aaPredicted RBP29.6■■■□□ 2.33
SMC4-209ENST00000468653 PCGF6Q9BYE7 350 aa29.6■■■□□ 2.33
SMC4-209ENST00000468653 CHMP7Q8WUX9 453 aaPredicted RBP29.55■■■□□ 2.32
SMC4-209ENST00000468653 SYNJ2O15056 1496 aa29.54■■■□□ 2.32
SMC4-209ENST00000468653 GRIN2AQ12879 1464 aa29.54■■■□□ 2.32
SMC4-209ENST00000468653 EFCAB5A4FU69 1503 aa29.53■■■□□ 2.32
SMC4-209ENST00000468653 APLP2Q06481 763 aa29.52■■■□□ 2.32
SMC4-209ENST00000468653 P3H3Q8IVL6 736 aa29.5■■■□□ 2.31
SMC4-209ENST00000468653 FBLN2P98095 1184 aa29.49■■■□□ 2.31
SMC4-209ENST00000468653 IQGAP2Q13576 1575 aa29.45■■■□□ 2.31
SMC4-209ENST00000468653 FHOD3Q2V2M9 1422 aa29.42■■■□□ 2.3
SMC4-209ENST00000468653 TTBK1Q5TCY1 1321 aaPredicted RBP29.42■■■□□ 2.3
SMC4-209ENST00000468653 KIAA0586Q9BVV6 1533 aa29.41■■■□□ 2.3
SMC4-209ENST00000468653 SAMD9Q5K651 1589 aa29.39■■■□□ 2.3
SMC4-209ENST00000468653 CEP170Q5SW79 1584 aa29.34■■■□□ 2.29
SMC4-209ENST00000468653 NUP160Q12769 1436 aa29.31■■■□□ 2.28
SMC4-209ENST00000468653 UGGT2Q9NYU1 1516 aa29.3■■■□□ 2.28
SMC4-209ENST00000468653 FMN1Q68DA7 1419 aa29.3■■■□□ 2.28
SMC4-209ENST00000468653 PCF11O94913 1555 aaKnown RBP29.24■■■□□ 2.27
SMC4-209ENST00000468653 ATP1B4Q9UN42 357 aaPredicted RBP29.23■■■□□ 2.27
SMC4-209ENST00000468653 CASKIN1Q8WXD9 1431 aa29.22■■■□□ 2.27
SMC4-209ENST00000468653 FYCO1Q9BQS8 1478 aa29.21■■■□□ 2.27
SMC4-209ENST00000468653 CHD1O14646 1710 aa29.2■■■□□ 2.26
SMC4-209ENST00000468653 KANK4Q5T7N3 995 aaPredicted RBP29.18■■■□□ 2.26
SMC4-209ENST00000468653 MAP3K1Q13233 1512 aa29.17■■■□□ 2.26
SMC4-209ENST00000468653 DISP1Q96F81 1524 aa29.16■■■□□ 2.26
SMC4-209ENST00000468653 JPH4Q96JJ6 628 aa29.16■■■□□ 2.26
SMC4-209ENST00000468653 KIAA0556O60303 1618 aa29.14■■■□□ 2.26
SMC4-209ENST00000468653 TIAM1Q13009 1591 aa29.14■■■□□ 2.26
SMC4-209ENST00000468653 CARMIL2Q6F5E8 1435 aa29.08■■■□□ 2.25
SMC4-209ENST00000468653 CFAP43Q8NDM7 1665 aa29.06■■■□□ 2.24
SMC4-209ENST00000468653 LRRC9Q6ZRR7 1453 aa29.02■■■□□ 2.24
SMC4-209ENST00000468653 HECW1Q76N89 1606 aa28.97■■■□□ 2.23
SMC4-209ENST00000468653 PRG4Q92954 1404 aaPredicted RBP28.95■■■□□ 2.22
SMC4-209ENST00000468653 CCDC18Q5T9S5 1454 aa28.92■■■□□ 2.22
SMC4-209ENST00000468653 LRRIQ1Q96JM4 1722 aa28.91■■■□□ 2.22
SMC4-209ENST00000468653 MTUS2Q5JR59 1369 aa28.88■■■□□ 2.21
SMC4-209ENST00000468653 SHROOM2Q13796 1616 aa28.88■■■□□ 2.21
SMC4-209ENST00000468653 EPRSP07814 1512 aaKnown RBP28.87■■■□□ 2.21
SMC4-209ENST00000468653 RAPGEF6Q8TEU7 1601 aa28.87■■■□□ 2.21
SMC4-209ENST00000468653 CLASP1Q7Z460 1538 aa28.86■■■□□ 2.21
SMC4-209ENST00000468653 ARID3CA6NKF2 412 aa28.82■■■□□ 2.2
SMC4-209ENST00000468653 PLB1Q6P1J6 1458 aa28.81■■■□□ 2.2
SMC4-209ENST00000468653 RRBP1Q9P2E9 1410 aaKnown RBP28.81■■■□□ 2.2
SMC4-209ENST00000468653 NUP153P49790 1475 aaKnown RBP28.8■■■□□ 2.2
SMC4-209ENST00000468653 CDK13Q14004 1512 aaKnown RBP28.8■■■□□ 2.2
SMC4-209ENST00000468653 PTPRGP23470 1445 aa28.79■■■□□ 2.2
SMC4-209ENST00000468653 EHBP1L1Q8N3D4 1523 aa28.77■■■□□ 2.2
SMC4-209ENST00000468653 PHLDB1Q86UU1 1377 aa28.77■■■□□ 2.2
SMC4-209ENST00000468653 CCNB3Q8WWL7 1395 aa28.75■■■□□ 2.19
SMC4-209ENST00000468653 HNRNPUL2Q1KMD3 747 aaKnown RBP28.75■■■□□ 2.19
SMC4-209ENST00000468653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.73■■■□□ 2.19
SMC4-209ENST00000468653 ABCA8O94911 1581 aa28.72■■■□□ 2.19
SMC4-209ENST00000468653 MAGI3Q5TCQ9 1506 aa28.71■■■□□ 2.19
SMC4-209ENST00000468653 ERCC6L2Q5T890 1561 aa28.7■■■□□ 2.18
SMC4-209ENST00000468653 CDK11AQ9UQ88 783 aaPredicted RBP28.7■■■□□ 2.18
SMC4-209ENST00000468653 SUPT6HQ7KZ85 1726 aaKnown RBP28.69■■■□□ 2.18
SMC4-209ENST00000468653 HRCP23327 699 aa28.69■■■□□ 2.18
SMC4-209ENST00000468653 OSCARQ8IYS5 282 aa28.68■■■□□ 2.18
SMC4-209ENST00000468653 NCOA2Q15596 1464 aa28.67■■■□□ 2.18
SMC4-209ENST00000468653 UACAQ9BZF9 1416 aa28.61■■■□□ 2.17
SMC4-209ENST00000468653 FAM50AQ14320 339 aaKnown RBP28.6■■■□□ 2.17
SMC4-209ENST00000468653 ARHGEF11O15085 1522 aa28.58■■■□□ 2.17
SMC4-209ENST00000468653 ATP10BO94823 1461 aa28.57■■■□□ 2.16
SMC4-209ENST00000468653 MYOM3Q5VTT5 1437 aa28.57■■■□□ 2.16
SMC4-209ENST00000468653 FGD6Q6ZV73 1430 aa28.57■■■□□ 2.16
SMC4-209ENST00000468653 ITGAEP38570 1179 aa28.55■■■□□ 2.16
SMC4-209ENST00000468653 TROQ12816 1431 aaPredicted RBP28.54■■■□□ 2.16
SMC4-209ENST00000468653 PLEKHD1A6NEE1 506 aa28.52■■■□□ 2.16
SMC4-209ENST00000468653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.51■■■□□ 2.163e-9■■■■■ 72.1
SMC4-209ENST00000468653 ABCC2Q92887 1545 aa28.48■■■□□ 2.15
SMC4-209ENST00000468653 CCER1Q8TC90 406 aaPredicted RBP28.47■■■□□ 2.15
SMC4-209ENST00000468653 ZEB1P37275 1124 aaPredicted RBP28.42■■■□□ 2.14
SMC4-209ENST00000468653 UHRF1BP1LA0JNW5 1464 aa28.41■■■□□ 2.14
SMC4-209ENST00000468653 MIA2Q96PC5 1412 aa28.41■■■□□ 2.14
SMC4-209ENST00000468653 PTPN23Q9H3S7 1636 aa28.41■■■□□ 2.14
SMC4-209ENST00000468653 ADCY10Q96PN6 1610 aa28.4■■■□□ 2.14
SMC4-209ENST00000468653 KIF14Q15058 1648 aa28.37■■■□□ 2.13
SMC4-209ENST00000468653 TCOF1Q13428 1488 aaKnown RBP28.35■■■□□ 2.13
SMC4-209ENST00000468653 KDM5BQ9UGL1 1544 aa28.3■■■□□ 2.12
SMC4-209ENST00000468653 GPATCH8Q9UKJ3 1502 aaKnown RBP28.28■■■□□ 2.12
SMC4-209ENST00000468653 CFDP1Q9UEE9 299 aaPredicted RBP28.28■■■□□ 2.12
SMC4-209ENST00000468653 ITSN2Q9NZM3 1697 aa28.28■■■□□ 2.12
SMC4-209ENST00000468653 ZCCHC11Q5TAX3 1644 aaKnown RBP28.28■■■□□ 2.12
SMC4-209ENST00000468653 ABCC10Q5T3U5 1492 aa28.26■■■□□ 2.12
SMC4-209ENST00000468653 SETD5Q9C0A6 1442 aa28.25■■■□□ 2.11
SMC4-209ENST00000468653 PTPRKQ15262 1439 aa28.22■■■□□ 2.11
SMC4-209ENST00000468653 RAB3GAP2Q9H2M9 1393 aa28.21■■■□□ 2.11
SMC4-209ENST00000468653 ZNF644Q9H582 1327 aaPredicted RBP28.2■■■□□ 2.11
SMC4-209ENST00000468653 ZNF777Q9ULD5 760 aaPredicted RBP28.18■■■□□ 2.1
SMC4-209ENST00000468653 KCNH8Q96L42 1107 aa28.17■■■□□ 2.1
SMC4-209ENST00000468653 CDC42BPAQ5VT25 1732 aa28.17■■■□□ 2.1
SMC4-209ENST00000468653 CAMSAP2Q08AD1 1489 aa28.16■■■□□ 2.1
SMC4-209ENST00000468653 CHIC2Q9UKJ5 165 aa28.12■■■□□ 2.09
SMC4-209ENST00000468653 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.11■■■□□ 2.091e-7■■■□□ 17.3
SMC4-209ENST00000468653 HFM1A2PYH4 1435 aa28.11■■■□□ 2.09
SMC4-209ENST00000468653 DAPK1P53355 1430 aa28.11■■■□□ 2.09
SMC4-209ENST00000468653 NPM1P06748 294 aaKnown RBP eCLIP28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms