RNA–Protein interactions for RNA: ENST00000466618.1

SNED1-208, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

TSL 5

Gene SNED1, Length 2,198 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-208ENST00000466618 NUP160Q12769 1436 aa24.17■■□□□ 1.46
SNED1-208ENST00000466618 TRIM26Q12899 539 aaPredicted RBP24.16■■□□□ 1.46
SNED1-208ENST00000466618 LOC105371045A0A1W2PR82 267 aa24.15■■□□□ 1.46
SNED1-208ENST00000466618 EHMT2Q96KQ7 1210 aa24.14■■□□□ 1.45
SNED1-208ENST00000466618 CEP170Q5SW79 1584 aa24.13■■□□□ 1.45
SNED1-208ENST00000466618 UBTFP17480 764 aaKnown RBP24.08■■□□□ 1.44
SNED1-208ENST00000466618 OSCARQ8IYS5 282 aa24.07■■□□□ 1.44
SNED1-208ENST00000466618 KIAA0586Q9BVV6 1533 aa24.06■■□□□ 1.44
SNED1-208ENST00000466618 TNIKQ9UKE5 1360 aa24.05■■□□□ 1.44
SNED1-208ENST00000466618 CLASP1Q7Z460 1538 aa24.02■■□□□ 1.44
SNED1-208ENST00000466618 ZEB1P37275 1124 aaPredicted RBP24■■□□□ 1.43
SNED1-208ENST00000466618 CTTNBP2Q8WZ74 1663 aa23.98■■□□□ 1.43
SNED1-208ENST00000466618 IQGAP2Q13576 1575 aa23.96■■□□□ 1.43
SNED1-208ENST00000466618 JPH4Q96JJ6 628 aa23.92■■□□□ 1.42
SNED1-208ENST00000466618 UGGT2Q9NYU1 1516 aa23.89■■□□□ 1.42
SNED1-208ENST00000466618 SHROOM2Q13796 1616 aa23.89■■□□□ 1.41
SNED1-208ENST00000466618 MYT1Q01538 1121 aa23.84■■□□□ 1.41
SNED1-208ENST00000466618 CEP162Q5TB80 1403 aa23.83■■□□□ 1.41
SNED1-208ENST00000466618 DISP1Q96F81 1524 aa23.81■■□□□ 1.4
SNED1-208ENST00000466618 PRG4Q92954 1404 aaPredicted RBP23.81■■□□□ 1.4
SNED1-208ENST00000466618 RANGAP1P46060 587 aaPredicted RBP23.81■■□□□ 1.4
SNED1-208ENST00000466618 CLIP1P30622 1438 aa23.8■■□□□ 1.4
SNED1-208ENST00000466618 SAMD9Q5K651 1589 aa23.79■■□□□ 1.4
SNED1-208ENST00000466618 ARHGAP35Q9NRY4 1499 aa23.79■■□□□ 1.4
SNED1-208ENST00000466618 EFCAB5A4FU69 1503 aa23.77■■□□□ 1.4
SNED1-208ENST00000466618 CARMIL2Q6F5E8 1435 aa23.75■■□□□ 1.39
SNED1-208ENST00000466618 KIAA0556O60303 1618 aa23.74■■□□□ 1.39
SNED1-208ENST00000466618 ERCC6L2Q5T890 1561 aa23.74■■□□□ 1.39
SNED1-208ENST00000466618 P3H3Q8IVL6 736 aa23.7■■□□□ 1.38
SNED1-208ENST00000466618 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
SNED1-208ENST00000466618 FHOD3Q2V2M9 1422 aa23.68■■□□□ 1.38
SNED1-208ENST00000466618 ARHGEF11O15085 1522 aa23.67■■□□□ 1.38
SNED1-208ENST00000466618 ACIN1Q9UKV3 1341 aaKnown RBP23.62■■□□□ 1.37
SNED1-208ENST00000466618 PTPRGP23470 1445 aa23.6■■□□□ 1.37
SNED1-208ENST00000466618 DNAJC5Q9H3Z4 198 aa23.59■■□□□ 1.37
SNED1-208ENST00000466618 RIMBP3CA6NJZ7 1639 aa23.58■■□□□ 1.36
SNED1-208ENST00000466618 RIMBP3BA6NNM3 1639 aa23.58■■□□□ 1.36
SNED1-208ENST00000466618 RIMBP3Q9UFD9 1639 aa23.58■■□□□ 1.36
SNED1-208ENST00000466618 FMN1Q68DA7 1419 aa23.56■■□□□ 1.36
SNED1-208ENST00000466618 NEUROD1Q13562 356 aa23.54■■□□□ 1.36
SNED1-208ENST00000466618 TTBK1Q5TCY1 1321 aaPredicted RBP23.52■■□□□ 1.36
SNED1-208ENST00000466618 VPS8Q8N3P4 1428 aa23.51■■□□□ 1.35
SNED1-208ENST00000466618 PLB1Q6P1J6 1458 aa23.49■■□□□ 1.35
SNED1-208ENST00000466618 ABCA8O94911 1581 aa23.47■■□□□ 1.35
SNED1-208ENST00000466618 UACAQ9BZF9 1416 aa23.46■■□□□ 1.35
SNED1-208ENST00000466618 CASKIN1Q8WXD9 1431 aa23.46■■□□□ 1.35
SNED1-208ENST00000466618 UHRF1BP1LA0JNW5 1464 aa23.43■■□□□ 1.34
SNED1-208ENST00000466618 CYB5RLQ6IPT4 315 aa23.42■■□□□ 1.34
SNED1-208ENST00000466618 PCF11O94913 1555 aaKnown RBP23.41■■□□□ 1.34
SNED1-208ENST00000466618 RAPGEF6Q8TEU7 1601 aa23.41■■□□□ 1.34
SNED1-208ENST00000466618 FYCO1Q9BQS8 1478 aa23.41■■□□□ 1.34
SNED1-208ENST00000466618 ABCC2Q92887 1545 aa23.4■■□□□ 1.34
SNED1-208ENST00000466618 NUP153P49790 1475 aaKnown RBP23.39■■□□□ 1.33
SNED1-208ENST00000466618 GTF3C3Q9Y5Q9 886 aa23.37■■□□□ 1.33
SNED1-208ENST00000466618 ADCY10Q96PN6 1610 aa23.36■■□□□ 1.33
SNED1-208ENST00000466618 HECW1Q76N89 1606 aa23.34■■□□□ 1.33
SNED1-208ENST00000466618 EPRSP07814 1512 aaKnown RBP23.31■■□□□ 1.32
SNED1-208ENST00000466618 ATP1B4Q9UN42 357 aaPredicted RBP23.31■■□□□ 1.32
SNED1-208ENST00000466618 KDM5BQ9UGL1 1544 aa23.31■■□□□ 1.32
SNED1-208ENST00000466618 ATP10BO94823 1461 aa23.3■■□□□ 1.32
SNED1-208ENST00000466618 CCDC18Q5T9S5 1454 aa23.26■■□□□ 1.31
SNED1-208ENST00000466618 ARID3CA6NKF2 412 aa23.26■■□□□ 1.31
SNED1-208ENST00000466618 LRRIQ1Q96JM4 1722 aa23.26■■□□□ 1.31
SNED1-208ENST00000466618 MAP3K1Q13233 1512 aa23.25■■□□□ 1.31
SNED1-208ENST00000466618 CDK13Q14004 1512 aaKnown RBP23.25■■□□□ 1.31
SNED1-208ENST00000466618 CENPBP07199 599 aaPredicted RBP23.23■■□□□ 1.31
SNED1-208ENST00000466618 ZCCHC11Q5TAX3 1644 aaKnown RBP23.2■■□□□ 1.31
SNED1-208ENST00000466618 TIAM1Q13009 1591 aa23.2■■□□□ 1.3
SNED1-208ENST00000466618 NPM1P06748 294 aaKnown RBP eCLIP23.18■■□□□ 1.3
SNED1-208ENST00000466618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.17■■□□□ 1.3
SNED1-208ENST00000466618 APLP2Q06481 763 aa23.17■■□□□ 1.3
SNED1-208ENST00000466618 HNRNPUL2Q1KMD3 747 aaKnown RBP23.17■■□□□ 1.3
SNED1-208ENST00000466618 CFAP43Q8NDM7 1665 aa23.16■■□□□ 1.3
SNED1-208ENST00000466618 KANK4Q5T7N3 995 aaPredicted RBP23.14■■□□□ 1.3
SNED1-208ENST00000466618 MAGI3Q5TCQ9 1506 aa23.14■■□□□ 1.3
SNED1-208ENST00000466618 CDK11AQ9UQ88 783 aaPredicted RBP23.14■■□□□ 1.29
SNED1-208ENST00000466618 LRRC9Q6ZRR7 1453 aa23.12■■□□□ 1.29
SNED1-208ENST00000466618 PLEKHD1A6NEE1 506 aa23.12■■□□□ 1.29
SNED1-208ENST00000466618 DIEXFQ68CQ4 756 aaKnown RBP23.12■■□□□ 1.29
SNED1-208ENST00000466618 MAPKBP1O60336 1514 aa23.11■■□□□ 1.29
SNED1-208ENST00000466618 ASXL2Q76L83 1435 aa23.11■■□□□ 1.29
SNED1-208ENST00000466618 TROQ12816 1431 aaPredicted RBP23.09■■□□□ 1.29
SNED1-208ENST00000466618 WDR7Q9Y4E6 1490 aa23.08■■□□□ 1.28
SNED1-208ENST00000466618 MTUS2Q5JR59 1369 aa23.07■■□□□ 1.28
SNED1-208ENST00000466618 EHBP1L1Q8N3D4 1523 aa23.05■■□□□ 1.28
SNED1-208ENST00000466618 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
SNED1-208ENST00000466618 KCNH8Q96L42 1107 aa22.97■■□□□ 1.27
SNED1-208ENST00000466618 KIF14Q15058 1648 aa22.96■■□□□ 1.27
SNED1-208ENST00000466618 NCOA2Q15596 1464 aa22.95■■□□□ 1.26
SNED1-208ENST00000466618 ABCC10Q5T3U5 1492 aa22.95■■□□□ 1.26
SNED1-208ENST00000466618 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.93■■□□□ 1.26
SNED1-208ENST00000466618 SUPT6HQ7KZ85 1726 aaKnown RBP22.92■■□□□ 1.26
SNED1-208ENST00000466618 GLI2P10070 1586 aa22.9■■□□□ 1.26
SNED1-208ENST00000466618 DIP2BQ9P265 1576 aa22.9■■□□□ 1.26
SNED1-208ENST00000466618 PHLDB1Q86UU1 1377 aa22.88■■□□□ 1.25
SNED1-208ENST00000466618 ABCA9Q8IUA7 1624 aa22.88■■□□□ 1.25
SNED1-208ENST00000466618 TTC37Q6PGP7 1564 aa22.88■■□□□ 1.25
SNED1-208ENST00000466618 FAM69CQ0P6D2 419 aa22.86■■□□□ 1.25
SNED1-208ENST00000466618 GPATCH8Q9UKJ3 1502 aaKnown RBP22.85■■□□□ 1.25
SNED1-208ENST00000466618 CCNB3Q8WWL7 1395 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms