RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
CLDN4-204ENST00000466411 ADGRL1O94910 1474 aa12.57□□□□□ -0.4
CLDN4-204ENST00000466411 DIP2BQ9P265 1576 aa12.56□□□□□ -0.4
CLDN4-204ENST00000466411 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
CLDN4-204ENST00000466411 LMTK3Q96Q04 1460 aa12.54□□□□□ -0.4
CLDN4-204ENST00000466411 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
CLDN4-204ENST00000466411 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
CLDN4-204ENST00000466411 MAPKBP1O60336 1514 aa12.52□□□□□ -0.4
CLDN4-204ENST00000466411 SOCS7O14512 581 aa12.52□□□□□ -0.41
CLDN4-204ENST00000466411 ILDR2Q71H61 639 aa12.52□□□□□ -0.41
CLDN4-204ENST00000466411 NUP160Q12769 1436 aa12.52□□□□□ -0.41
CLDN4-204ENST00000466411 PBRM1Q86U86 1689 aa12.5□□□□□ -0.41
CLDN4-204ENST00000466411 TSPOAP1O95153 1857 aa12.48□□□□□ -0.41
CLDN4-204ENST00000466411 GRIN2AQ12879 1464 aa12.46□□□□□ -0.41
CLDN4-204ENST00000466411 SCAF1Q9H7N4 1312 aaKnown RBP12.46□□□□□ -0.41
CLDN4-204ENST00000466411 CUX1P39880 1505 aa12.44□□□□□ -0.42
CLDN4-204ENST00000466411 NPM3O75607 178 aaKnown RBP12.43□□□□□ -0.42
CLDN4-204ENST00000466411 ABCA5Q8WWZ7 1642 aa12.41□□□□□ -0.42
CLDN4-204ENST00000466411 COL17A1Q9UMD9 1497 aaPredicted RBP12.4□□□□□ -0.42
CLDN4-204ENST00000466411 PRG4Q92954 1404 aaPredicted RBP12.4□□□□□ -0.42
CLDN4-204ENST00000466411 CNKSR2Q8WXI2 1034 aa12.4□□□□□ -0.42
CLDN4-204ENST00000466411 ADCY10Q96PN6 1610 aa12.4□□□□□ -0.42
CLDN4-204ENST00000466411 PPRC1Q5VV67 1664 aaKnown RBP12.38□□□□□ -0.43
CLDN4-204ENST00000466411 NPM1P06748 294 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLDN4-204ENST00000466411 MAPK8IP2Q13387 824 aaPredicted RBP12.37□□□□□ -0.43
CLDN4-204ENST00000466411 ABCA10Q8WWZ4 1543 aa12.37□□□□□ -0.43
CLDN4-204ENST00000466411 JPH4Q96JJ6 628 aa12.36□□□□□ -0.43
CLDN4-204ENST00000466411 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
CLDN4-204ENST00000466411 DISP3Q9P2K9 1392 aa12.3□□□□□ -0.44
CLDN4-204ENST00000466411 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
CLDN4-204ENST00000466411 SLC4A1APQ9BWU0 796 aaKnown RBP12.29□□□□□ -0.44
CLDN4-204ENST00000466411 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
CLDN4-204ENST00000466411 GLI2P10070 1586 aa12.27□□□□□ -0.44
CLDN4-204ENST00000466411 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
CLDN4-204ENST00000466411 SUPT5HO00267 1087 aaKnown RBP12.2□□□□□ -0.46
CLDN4-204ENST00000466411 RUSC2Q8N2Y8 1516 aa12.2□□□□□ -0.46
CLDN4-204ENST00000466411 ASXL2Q76L83 1435 aa12.2□□□□□ -0.46
CLDN4-204ENST00000466411 MAP3K4Q9Y6R4 1608 aa12.18□□□□□ -0.46
CLDN4-204ENST00000466411 ERICH3Q5RHP9 1530 aa12.17□□□□□ -0.46
CLDN4-204ENST00000466411 PLB1Q6P1J6 1458 aa12.17□□□□□ -0.46
CLDN4-204ENST00000466411 CERKQ8TCT0 537 aa12.17□□□□□ -0.46
CLDN4-204ENST00000466411 ABCC2Q92887 1545 aa12.15□□□□□ -0.46
CLDN4-204ENST00000466411 DMRT2Q9Y5R5 561 aa12.14□□□□□ -0.47
CLDN4-204ENST00000466411 PTPRMP28827 1452 aa12.14□□□□□ -0.47
CLDN4-204ENST00000466411 EPRSP07814 1512 aaKnown RBP12.12□□□□□ -0.47
CLDN4-204ENST00000466411 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
CLDN4-204ENST00000466411 WRNQ14191 1432 aaPredicted RBP eCLIP12.11□□□□□ -0.47
CLDN4-204ENST00000466411 ADAMTSL3P82987 1691 aa12.11□□□□□ -0.47
CLDN4-204ENST00000466411 SPATA31D1Q6ZQQ2 1576 aa12.11□□□□□ -0.47
CLDN4-204ENST00000466411 TEX14Q8IWB6 1497 aa12.11□□□□□ -0.47
CLDN4-204ENST00000466411 KIF21BO75037 1637 aa12.09□□□□□ -0.47
CLDN4-204ENST00000466411 RNF216Q9NWF9 866 aaPredicted RBP12.09□□□□□ -0.47
CLDN4-204ENST00000466411 PTPRGP23470 1445 aa12.09□□□□□ -0.47
CLDN4-204ENST00000466411 KIAA0586Q9BVV6 1533 aa12.08□□□□□ -0.48
CLDN4-204ENST00000466411 CUL7Q14999 1698 aa12.07□□□□□ -0.48
CLDN4-204ENST00000466411 UHRF1BP1LA0JNW5 1464 aa12.07□□□□□ -0.48
CLDN4-204ENST00000466411 KDM5BQ9UGL1 1544 aa12.03□□□□□ -0.48
CLDN4-204ENST00000466411 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
CLDN4-204ENST00000466411 HSPA2P54652 639 aa12.02□□□□□ -0.49
CLDN4-204ENST00000466411 TNIKQ9UKE5 1360 aa12□□□□□ -0.49
CLDN4-204ENST00000466411 MAGI3Q5TCQ9 1506 aa12□□□□□ -0.49
CLDN4-204ENST00000466411 HOXD11P31277 338 aaPredicted RBP11.99□□□□□ -0.49
CLDN4-204ENST00000466411 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
CLDN4-204ENST00000466411 UACAQ9BZF9 1416 aa11.98□□□□□ -0.49
CLDN4-204ENST00000466411 BCORL1Q5H9F3 1711 aa11.96□□□□□ -0.49
CLDN4-204ENST00000466411 MADDQ8WXG6 1647 aa11.95□□□□□ -0.5
CLDN4-204ENST00000466411 ARAP3Q8WWN8 1544 aa11.95□□□□□ -0.5
CLDN4-204ENST00000466411 ZCCHC11Q5TAX3 1644 aaKnown RBP11.94□□□□□ -0.5
CLDN4-204ENST00000466411 TTBK1Q5TCY1 1321 aaPredicted RBP11.94□□□□□ -0.5
CLDN4-204ENST00000466411 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
CLDN4-204ENST00000466411 WDR7Q9Y4E6 1490 aa11.92□□□□□ -0.5
CLDN4-204ENST00000466411 CFAP43Q8NDM7 1665 aa11.91□□□□□ -0.5
CLDN4-204ENST00000466411 ZBTB22O15209 634 aa11.91□□□□□ -0.5
CLDN4-204ENST00000466411 CARMIL2Q6F5E8 1435 aa11.9□□□□□ -0.5
CLDN4-204ENST00000466411 IGF1RP08069 1367 aa11.9□□□□□ -0.5
CLDN4-204ENST00000466411 DISP1Q96F81 1524 aa11.88□□□□□ -0.51
CLDN4-204ENST00000466411 RIMS1Q86UR5 1692 aaKnown RBP11.87□□□□□ -0.51
CLDN4-204ENST00000466411 STRCQ7RTU9 1775 aa11.86□□□□□ -0.51
CLDN4-204ENST00000466411 RAPGEF3O95398 923 aa11.83□□□□□ -0.52
CLDN4-204ENST00000466411 YEATS2Q9ULM3 1422 aa11.82□□□□□ -0.52
CLDN4-204ENST00000466411 LTBP4Q8N2S1 1624 aa11.82□□□□□ -0.52
CLDN4-204ENST00000466411 KCNH8Q96L42 1107 aa11.81□□□□□ -0.52
CLDN4-204ENST00000466411 PHLDB1Q86UU1 1377 aa11.79□□□□□ -0.52
CLDN4-204ENST00000466411 IQGAP2Q13576 1575 aa11.79□□□□□ -0.52
CLDN4-204ENST00000466411 FRMPD1Q5SYB0 1578 aa11.79□□□□□ -0.52
CLDN4-204ENST00000466411 IQSEC2Q5JU85 1478 aa11.78□□□□□ -0.52
CLDN4-204ENST00000466411 ARID4BQ4LE39 1312 aaPredicted RBP11.78□□□□□ -0.52
CLDN4-204ENST00000466411 FOXD4L1Q9NU39 408 aa11.76□□□□□ -0.53
CLDN4-204ENST00000466411 SIGLEC1Q9BZZ2 1709 aa11.76□□□□□ -0.53
CLDN4-204ENST00000466411 PTPRTO14522 1441 aa11.75□□□□□ -0.53
CLDN4-204ENST00000466411 UGGT2Q9NYU1 1516 aa11.75□□□□□ -0.53
CLDN4-204ENST00000466411 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
CLDN4-204ENST00000466411 PREX1Q8TCU6 1659 aa11.72□□□□□ -0.53
CLDN4-204ENST00000466411 TTC37Q6PGP7 1564 aa11.72□□□□□ -0.53
CLDN4-204ENST00000466411 KIAA0556O60303 1618 aa11.71□□□□□ -0.53
CLDN4-204ENST00000466411 ARHGEF40Q8TER5 1519 aa11.71□□□□□ -0.53
CLDN4-204ENST00000466411 ABCA8O94911 1581 aa11.71□□□□□ -0.54
CLDN4-204ENST00000466411 MED1Q15648 1581 aaPredicted RBP11.71□□□□□ -0.54
CLDN4-204ENST00000466411 SETD1BQ9UPS6 1966 aaKnown RBP11.7□□□□□ -0.54
CLDN4-204ENST00000466411 NEO1Q92859 1461 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms