RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DIP2BQ9P265 1576 aa21.31■■□□□ 1
SQSTM1-206ENST00000466342 MAPKBP1O60336 1514 aa21.3■■□□□ 1
SQSTM1-206ENST00000466342 JPH4Q96JJ6 628 aa21.29■■□□□ 1
SQSTM1-206ENST00000466342 TSPOAP1O95153 1857 aa21.28■■□□□ 1
SQSTM1-206ENST00000466342 WRNQ14191 1432 aaPredicted RBP eCLIP21.25■□□□□ 0.99
SQSTM1-206ENST00000466342 SUPT5HO00267 1087 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-206ENST00000466342 ERICH3Q5RHP9 1530 aa21.21■□□□□ 0.99
SQSTM1-206ENST00000466342 ADCY10Q96PN6 1610 aa21.19■□□□□ 0.98
SQSTM1-206ENST00000466342 BIVM-ERCC5R4GMW8 1640 aa21.12■□□□□ 0.97
SQSTM1-206ENST00000466342 RUSC2Q8N2Y8 1516 aa21.11■□□□□ 0.97
SQSTM1-206ENST00000466342 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
SQSTM1-206ENST00000466342 ADGRL1O94910 1474 aa21.07■□□□□ 0.96
SQSTM1-206ENST00000466342 HECW2Q9P2P5 1572 aa21.03■□□□□ 0.96
SQSTM1-206ENST00000466342 PPRC1Q5VV67 1664 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-206ENST00000466342 KIAA0586Q9BVV6 1533 aa20.95■□□□□ 0.94
SQSTM1-206ENST00000466342 GLI2P10070 1586 aa20.94■□□□□ 0.94
SQSTM1-206ENST00000466342 PTPRGP23470 1445 aa20.9■□□□□ 0.94
SQSTM1-206ENST00000466342 PLB1Q6P1J6 1458 aa20.89■□□□□ 0.94
SQSTM1-206ENST00000466342 ABCC2Q92887 1545 aa20.88■□□□□ 0.93
SQSTM1-206ENST00000466342 COL17A1Q9UMD9 1497 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-206ENST00000466342 ASXL2Q76L83 1435 aa20.88■□□□□ 0.93
SQSTM1-206ENST00000466342 FBXO41Q8TF61 875 aa20.88■□□□□ 0.93
SQSTM1-206ENST00000466342 CUL7Q14999 1698 aa20.85■□□□□ 0.93
SQSTM1-206ENST00000466342 TTBK1Q5TCY1 1321 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-206ENST00000466342 MAP3K4Q9Y6R4 1608 aa20.82■□□□□ 0.92
SQSTM1-206ENST00000466342 TNIKQ9UKE5 1360 aa20.8■□□□□ 0.92
SQSTM1-206ENST00000466342 TEX14Q8IWB6 1497 aa20.78■□□□□ 0.92
SQSTM1-206ENST00000466342 UHRF1BP1LA0JNW5 1464 aa20.77■□□□□ 0.92
SQSTM1-206ENST00000466342 CARMIL2Q6F5E8 1435 aa20.77■□□□□ 0.91
SQSTM1-206ENST00000466342 IGF1RP08069 1367 aa20.76■□□□□ 0.91
SQSTM1-206ENST00000466342 EPRSP07814 1512 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-206ENST00000466342 UACAQ9BZF9 1416 aa20.71■□□□□ 0.91
SQSTM1-206ENST00000466342 KDM5BQ9UGL1 1544 aa20.68■□□□□ 0.9
SQSTM1-206ENST00000466342 KIF27Q86VH2 1401 aa20.66■□□□□ 0.9
SQSTM1-206ENST00000466342 ZCCHC11Q5TAX3 1644 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-206ENST00000466342 IQGAP2Q13576 1575 aa20.63■□□□□ 0.89
SQSTM1-206ENST00000466342 CARMIL1Q5VZK9 1371 aa20.6■□□□□ 0.89
SQSTM1-206ENST00000466342 DISP1Q96F81 1524 aa20.58■□□□□ 0.89
SQSTM1-206ENST00000466342 KIF21BO75037 1637 aa20.57■□□□□ 0.88
SQSTM1-206ENST00000466342 CFAP43Q8NDM7 1665 aa20.55■□□□□ 0.88
SQSTM1-206ENST00000466342 WDR7Q9Y4E6 1490 aa20.55■□□□□ 0.88
SQSTM1-206ENST00000466342 MAGI3Q5TCQ9 1506 aa20.54■□□□□ 0.88
SQSTM1-206ENST00000466342 CD109Q6YHK3 1445 aa20.53■□□□□ 0.88
SQSTM1-206ENST00000466342 LMTK3Q96Q04 1460 aa20.5■□□□□ 0.87
SQSTM1-206ENST00000466342 PTPRMP28827 1452 aa20.48■□□□□ 0.87
SQSTM1-206ENST00000466342 ADAMTSL3P82987 1691 aa20.48■□□□□ 0.87
SQSTM1-206ENST00000466342 UGGT2Q9NYU1 1516 aa20.48■□□□□ 0.87
SQSTM1-206ENST00000466342 KCNH8Q96L42 1107 aa20.47■□□□□ 0.87
SQSTM1-206ENST00000466342 KIAA0556O60303 1618 aa20.45■□□□□ 0.86
SQSTM1-206ENST00000466342 ARAP3Q8WWN8 1544 aa20.43■□□□□ 0.86
SQSTM1-206ENST00000466342 PCF11O94913 1555 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-206ENST00000466342 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
SQSTM1-206ENST00000466342 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.85
SQSTM1-206ENST00000466342 SOCS7O14512 581 aa20.33■□□□□ 0.85
SQSTM1-206ENST00000466342 ABCA8O94911 1581 aa20.32■□□□□ 0.84
SQSTM1-206ENST00000466342 MADDQ8WXG6 1647 aa20.31■□□□□ 0.84
SQSTM1-206ENST00000466342 ILDR2Q71H61 639 aa20.31■□□□□ 0.84
SQSTM1-206ENST00000466342 PHLDB1Q86UU1 1377 aa20.31■□□□□ 0.84
SQSTM1-206ENST00000466342 CERKQ8TCT0 537 aa20.3■□□□□ 0.84
SQSTM1-206ENST00000466342 ARID4BQ4LE39 1312 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-206ENST00000466342 RAPGEF3O95398 923 aa20.27■□□□□ 0.84
SQSTM1-206ENST00000466342 DISP3Q9P2K9 1392 aa20.26■□□□□ 0.83
SQSTM1-206ENST00000466342 CTTNBP2Q8WZ74 1663 aa20.26■□□□□ 0.83
SQSTM1-206ENST00000466342 GOLGA3Q08378 1498 aa20.25■□□□□ 0.83
SQSTM1-206ENST00000466342 RIMS1Q86UR5 1692 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-206ENST00000466342 HSPA2P54652 639 aa20.24■□□□□ 0.83
SQSTM1-206ENST00000466342 ABCA9Q8IUA7 1624 aa20.22■□□□□ 0.83
SQSTM1-206ENST00000466342 NEO1Q92859 1461 aa20.19■□□□□ 0.82
SQSTM1-206ENST00000466342 FRMPD1Q5SYB0 1578 aa20.17■□□□□ 0.82
SQSTM1-206ENST00000466342 ATP10BO94823 1461 aa20.16■□□□□ 0.82
SQSTM1-206ENST00000466342 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-206ENST00000466342 ARID3CA6NKF2 412 aa20.13■□□□□ 0.81
SQSTM1-206ENST00000466342 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
SQSTM1-206ENST00000466342 ARHGEF40Q8TER5 1519 aa20.09■□□□□ 0.81
SQSTM1-206ENST00000466342 RICTORQ6R327 1708 aa20.07■□□□□ 0.8
SQSTM1-206ENST00000466342 POGZQ7Z3K3 1410 aa20.07■□□□□ 0.8
SQSTM1-206ENST00000466342 FANCAO15360 1455 aa20.04■□□□□ 0.8
SQSTM1-206ENST00000466342 DENND4BO75064 1496 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-206ENST00000466342 SPATA31D1Q6ZQQ2 1576 aa20.04■□□□□ 0.8
SQSTM1-206ENST00000466342 FER1L4A9Z1Z3 1794 aa20.03■□□□□ 0.8
SQSTM1-206ENST00000466342 SIGLEC1Q9BZZ2 1709 aa20.02■□□□□ 0.79
SQSTM1-206ENST00000466342 P3H3Q8IVL6 736 aa20.01■□□□□ 0.79
SQSTM1-206ENST00000466342 DMRT2Q9Y5R5 561 aa20.01■□□□□ 0.79
SQSTM1-206ENST00000466342 AKNAQ7Z591 1439 aa20.01■□□□□ 0.79
SQSTM1-206ENST00000466342 FHOD3Q2V2M9 1422 aa20■□□□□ 0.79
SQSTM1-206ENST00000466342 PREX1Q8TCU6 1659 aa20■□□□□ 0.79
SQSTM1-206ENST00000466342 STRCQ7RTU9 1775 aa19.99■□□□□ 0.79
SQSTM1-206ENST00000466342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.99■□□□□ 0.79
SQSTM1-206ENST00000466342 HNRNPUL2Q1KMD3 747 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-206ENST00000466342 TTC37Q6PGP7 1564 aa19.99■□□□□ 0.79
SQSTM1-206ENST00000466342 YEATS2Q9ULM3 1422 aa19.98■□□□□ 0.79
SQSTM1-206ENST00000466342 RAPGEF6Q8TEU7 1601 aa19.97■□□□□ 0.79
SQSTM1-206ENST00000466342 MLECQ14165 292 aa19.96■□□□□ 0.79
SQSTM1-206ENST00000466342 ZMYM4Q5VZL5 1548 aa19.96■□□□□ 0.79
SQSTM1-206ENST00000466342 EFCAB5A4FU69 1503 aa19.95■□□□□ 0.78
SQSTM1-206ENST00000466342 ZFYVE16Q7Z3T8 1539 aa19.95■□□□□ 0.78
SQSTM1-206ENST00000466342 SETD1BQ9UPS6 1966 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-206ENST00000466342 CFAP74Q9C0B2 1584 aa19.95■□□□□ 0.78
SQSTM1-206ENST00000466342 CHIC1Q5VXU3 224 aa19.93■□□□□ 0.78
SQSTM1-206ENST00000466342 MAGI2Q86UL8 1455 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms