RNA–Protein interactions for RNA: ENST00000463144.5

MSH5-211, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 2,296 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-211ENST00000463144 PBRM1Q86U86 1689 aa15.51■□□□□ 0.07
MSH5-211ENST00000463144 AQRO60306 1485 aaKnown RBP eCLIP15.5■□□□□ 0.073e-9■■■■■ 36.3
MSH5-211ENST00000463144 P3H3Q8IVL6 736 aa15.49■□□□□ 0.07
MSH5-211ENST00000463144 CCER1Q8TC90 406 aaPredicted RBP15.48■□□□□ 0.07
MSH5-211ENST00000463144 EFCAB5A4FU69 1503 aa15.47■□□□□ 0.07
MSH5-211ENST00000463144 FHOD3Q2V2M9 1422 aa15.46■□□□□ 0.07
MSH5-211ENST00000463144 IFT140Q96RY7 1462 aa15.46■□□□□ 0.07
MSH5-211ENST00000463144 ZNF608Q9ULD9 1512 aaPredicted RBP15.46■□□□□ 0.07
MSH5-211ENST00000463144 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
MSH5-211ENST00000463144 MAP3K1Q13233 1512 aa15.45■□□□□ 0.06
MSH5-211ENST00000463144 TIAM1Q13009 1591 aa15.45■□□□□ 0.06
MSH5-211ENST00000463144 FHAD1B1AJZ9 1412 aa15.44■□□□□ 0.06
MSH5-211ENST00000463144 PCF11O94913 1555 aaKnown RBP15.43■□□□□ 0.06
MSH5-211ENST00000463144 ADAMTS12P58397 1594 aa15.43■□□□□ 0.06
MSH5-211ENST00000463144 GRIN2BQ13224 1484 aa15.42■□□□□ 0.06
MSH5-211ENST00000463144 SAMD9Q5K651 1589 aa15.41■□□□□ 0.06
MSH5-211ENST00000463144 RRBP1Q9P2E9 1410 aaKnown RBP15.39■□□□□ 0.05
MSH5-211ENST00000463144 CFAP43Q8NDM7 1665 aa15.38■□□□□ 0.05
MSH5-211ENST00000463144 LRRC9Q6ZRR7 1453 aa15.38■□□□□ 0.05
MSH5-211ENST00000463144 CASKIN1Q8WXD9 1431 aa15.37■□□□□ 0.05
MSH5-211ENST00000463144 FYCO1Q9BQS8 1478 aa15.37■□□□□ 0.05
MSH5-211ENST00000463144 EIF4G3O43432 1585 aaKnown RBP15.36■□□□□ 0.05
MSH5-211ENST00000463144 FMN1Q68DA7 1419 aa15.34■□□□□ 0.05
MSH5-211ENST00000463144 SNAPC4Q5SXM2 1469 aa15.34■□□□□ 0.05
MSH5-211ENST00000463144 ATP1B4Q9UN42 357 aaPredicted RBP15.33■□□□□ 0.05
MSH5-211ENST00000463144 CCNB3Q8WWL7 1395 aa15.32■□□□□ 0.04
MSH5-211ENST00000463144 IQGAP2Q13576 1575 aa15.31■□□□□ 0.04
MSH5-211ENST00000463144 LRRIQ1Q96JM4 1722 aa15.31■□□□□ 0.04
MSH5-211ENST00000463144 PHLDB1Q86UU1 1377 aa15.29■□□□□ 0.04
MSH5-211ENST00000463144 GRIN2AQ12879 1464 aa15.26■□□□□ 0.03
MSH5-211ENST00000463144 UGGT2Q9NYU1 1516 aa15.25■□□□□ 0.03
MSH5-211ENST00000463144 MAGI1Q96QZ7 1491 aaPredicted RBP15.24■□□□□ 0.03
MSH5-211ENST00000463144 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
MSH5-211ENST00000463144 SYNJ2O15056 1496 aa15.2■□□□□ 0.02
MSH5-211ENST00000463144 ITGAEP38570 1179 aa15.2■□□□□ 0.02
MSH5-211ENST00000463144 DISP1Q96F81 1524 aa15.19■□□□□ 0.02
MSH5-211ENST00000463144 CEP170Q5SW79 1584 aa15.18■□□□□ 0.02
MSH5-211ENST00000463144 CHMP7Q8WUX9 453 aaPredicted RBP15.17■□□□□ 0.02
MSH5-211ENST00000463144 MTUS2Q5JR59 1369 aa15.17■□□□□ 0.02
MSH5-211ENST00000463144 DHX57Q6P158 1386 aaKnown RBP15.17■□□□□ 0.02
MSH5-211ENST00000463144 KIAA0556O60303 1618 aa15.17■□□□□ 0.02
MSH5-211ENST00000463144 MAGI3Q5TCQ9 1506 aa15.16■□□□□ 0.02
MSH5-211ENST00000463144 HECW1Q76N89 1606 aa15.15■□□□□ 0.02
MSH5-211ENST00000463144 FAM50AQ14320 339 aaKnown RBP15.14■□□□□ 0.01
MSH5-211ENST00000463144 CCDC18Q5T9S5 1454 aa15.14■□□□□ 0.01
MSH5-211ENST00000463144 FBLN2P98095 1184 aa15.14■□□□□ 0.01
MSH5-211ENST00000463144 EPRSP07814 1512 aaKnown RBP15.13■□□□□ 0.01
MSH5-211ENST00000463144 EHBP1L1Q8N3D4 1523 aa15.13■□□□□ 0.01
MSH5-211ENST00000463144 NCOA2Q15596 1464 aa15.12■□□□□ 0.01
MSH5-211ENST00000463144 NUP160Q12769 1436 aa15.12■□□□□ 0.01
MSH5-211ENST00000463144 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.12■□□□□ 0.01
MSH5-211ENST00000463144 FGD6Q6ZV73 1430 aa15.12■□□□□ 0.01
MSH5-211ENST00000463144 SUPT6HQ7KZ85 1726 aaKnown RBP15.12■□□□□ 0.01
MSH5-211ENST00000463144 ARHGEF11O15085 1522 aa15.1■□□□□ 0.01
MSH5-211ENST00000463144 CDK13Q14004 1512 aaKnown RBP15.1■□□□□ 0.01
MSH5-211ENST00000463144 RAB3GAP2Q9H2M9 1393 aa15.1■□□□□ 0.01
MSH5-211ENST00000463144 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
MSH5-211ENST00000463144 SETD5Q9C0A6 1442 aa15.08■□□□□ 0.01
MSH5-211ENST00000463144 MYOM3Q5VTT5 1437 aa15.07■□□□□ 0
MSH5-211ENST00000463144 RAPGEF6Q8TEU7 1601 aa15.06■□□□□ 0
MSH5-211ENST00000463144 ARID3CA6NKF2 412 aa15.06■□□□□ 0
MSH5-211ENST00000463144 JPH4Q96JJ6 628 aa15.06■□□□□ 0
MSH5-211ENST00000463144 NUP153P49790 1475 aaKnown RBP15.05■□□□□ 0
MSH5-211ENST00000463144 PTPRKQ15262 1439 aa15.03■□□□□ -0
MSH5-211ENST00000463144 PTPN23Q9H3S7 1636 aa15.02□□□□□ -0.01
MSH5-211ENST00000463144 PLB1Q6P1J6 1458 aa15□□□□□ -0.01
MSH5-211ENST00000463144 CARMIL2Q6F5E8 1435 aa15□□□□□ -0.01
MSH5-211ENST00000463144 MAPKBP1O60336 1514 aa14.99□□□□□ -0.01
MSH5-211ENST00000463144 CHD1O14646 1710 aa14.99□□□□□ -0.01
MSH5-211ENST00000463144 ZNF316A6NFI3 1004 aaPredicted RBP14.98□□□□□ -0.01
MSH5-211ENST00000463144 TCOF1Q13428 1488 aaKnown RBP14.98□□□□□ -0.01
MSH5-211ENST00000463144 MIA2Q96PC5 1412 aa14.94□□□□□ -0.02
MSH5-211ENST00000463144 HFM1A2PYH4 1435 aa14.94□□□□□ -0.02
MSH5-211ENST00000463144 ABCA8O94911 1581 aa14.94□□□□□ -0.02
MSH5-211ENST00000463144 DIEXFQ68CQ4 756 aaKnown RBP14.93□□□□□ -0.02
MSH5-211ENST00000463144 PRG4Q92954 1404 aaPredicted RBP14.92□□□□□ -0.02
MSH5-211ENST00000463144 NAIPQ13075 1403 aa14.92□□□□□ -0.02
MSH5-211ENST00000463144 CDK11AQ9UQ88 783 aaPredicted RBP14.91□□□□□ -0.02
MSH5-211ENST00000463144 TROQ12816 1431 aaPredicted RBP14.9□□□□□ -0.02
MSH5-211ENST00000463144 SHROOM2Q13796 1616 aa14.88□□□□□ -0.03
MSH5-211ENST00000463144 ADCY10Q96PN6 1610 aa14.88□□□□□ -0.03
MSH5-211ENST00000463144 ATP10BO94823 1461 aa14.87□□□□□ -0.03
MSH5-211ENST00000463144 KIF14Q15058 1648 aa14.87□□□□□ -0.03
MSH5-211ENST00000463144 SIN3AQ96ST3 1273 aa14.86□□□□□ -0.03
MSH5-211ENST00000463144 CHIC2Q9UKJ5 165 aa14.86□□□□□ -0.03
MSH5-211ENST00000463144 PTPRGP23470 1445 aa14.85□□□□□ -0.03
MSH5-211ENST00000463144 ZNF644Q9H582 1327 aaPredicted RBP14.85□□□□□ -0.03
MSH5-211ENST00000463144 RRP7BPQ9NSQ0 103 aa14.85□□□□□ -0.03
MSH5-211ENST00000463144 GCC2Q8IWJ2 1684 aa14.85□□□□□ -0.03
MSH5-211ENST00000463144 UACAQ9BZF9 1416 aa14.84□□□□□ -0.03
MSH5-211ENST00000463144 GPATCH8Q9UKJ3 1502 aaKnown RBP14.83□□□□□ -0.04
MSH5-211ENST00000463144 AKNAQ7Z591 1439 aa14.83□□□□□ -0.04
MSH5-211ENST00000463144 KDM6BO15054 1643 aa14.83□□□□□ -0.04
MSH5-211ENST00000463144 ERCC6L2Q5T890 1561 aa14.83□□□□□ -0.04
MSH5-211ENST00000463144 DNMT1P26358 1616 aaKnown RBP14.82□□□□□ -0.04
MSH5-211ENST00000463144 DAPK1P53355 1430 aa14.82□□□□□ -0.04
MSH5-211ENST00000463144 ABCC5O15440 1437 aa14.82□□□□□ -0.04
MSH5-211ENST00000463144 ITSN2Q9NZM3 1697 aa14.81□□□□□ -0.04
MSH5-211ENST00000463144 NEUROD1Q13562 356 aa14.81□□□□□ -0.04
MSH5-211ENST00000463144 PLEKHD1A6NEE1 506 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms