RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 JPH4Q96JJ6 628 aa21.93■■□□□ 1.1
HDAC4-207ENST00000461113 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.09
HDAC4-207ENST00000461113 KDM6BO15054 1643 aa21.88■■□□□ 1.09
HDAC4-207ENST00000461113 DIP2BQ9P265 1576 aa21.86■■□□□ 1.09
HDAC4-207ENST00000461113 MAPKBP1O60336 1514 aa21.85■■□□□ 1.09
HDAC4-207ENST00000461113 ERICH3Q5RHP9 1530 aa21.77■■□□□ 1.08
HDAC4-207ENST00000461113 ADCY10Q96PN6 1610 aa21.75■■□□□ 1.07
HDAC4-207ENST00000461113 ADGRL1O94910 1474 aa21.7■■□□□ 1.06
HDAC4-207ENST00000461113 TSPOAP1O95153 1857 aa21.69■■□□□ 1.06
HDAC4-207ENST00000461113 RUSC2Q8N2Y8 1516 aa21.67■■□□□ 1.06
HDAC4-207ENST00000461113 TOP2BQ02880 1626 aa21.64■■□□□ 1.05
HDAC4-207ENST00000461113 HECW2Q9P2P5 1572 aa21.61■■□□□ 1.05
HDAC4-207ENST00000461113 BIVM-ERCC5R4GMW8 1640 aa21.61■■□□□ 1.05
HDAC4-207ENST00000461113 TTBK1Q5TCY1 1321 aaPredicted RBP21.57■■□□□ 1.04
HDAC4-207ENST00000461113 KIAA0586Q9BVV6 1533 aa21.55■■□□□ 1.04
HDAC4-207ENST00000461113 PTPRGP23470 1445 aa21.55■■□□□ 1.04
HDAC4-207ENST00000461113 ASXL2Q76L83 1435 aa21.52■■□□□ 1.04
HDAC4-207ENST00000461113 COL17A1Q9UMD9 1497 aaPredicted RBP21.52■■□□□ 1.03
HDAC4-207ENST00000461113 PLB1Q6P1J6 1458 aa21.49■■□□□ 1.03
HDAC4-207ENST00000461113 FBXO41Q8TF61 875 aa21.48■■□□□ 1.03
HDAC4-207ENST00000461113 ABCC2Q92887 1545 aa21.48■■□□□ 1.03
HDAC4-207ENST00000461113 PPRC1Q5VV67 1664 aaKnown RBP21.47■■□□□ 1.03
HDAC4-207ENST00000461113 GLI2P10070 1586 aa21.47■■□□□ 1.03
HDAC4-207ENST00000461113 TNIKQ9UKE5 1360 aa21.42■■□□□ 1.02
HDAC4-207ENST00000461113 IGF1RP08069 1367 aa21.41■■□□□ 1.02
HDAC4-207ENST00000461113 CARMIL2Q6F5E8 1435 aa21.37■■□□□ 1.01
HDAC4-207ENST00000461113 EPRSP07814 1512 aaKnown RBP21.36■■□□□ 1.01
HDAC4-207ENST00000461113 TEX14Q8IWB6 1497 aa21.35■■□□□ 1.01
HDAC4-207ENST00000461113 UHRF1BP1LA0JNW5 1464 aa21.33■■□□□ 1.01
HDAC4-207ENST00000461113 UACAQ9BZF9 1416 aa21.33■■□□□ 1.01
HDAC4-207ENST00000461113 CUL7Q14999 1698 aa21.29■■□□□ 1
HDAC4-207ENST00000461113 MAP3K4Q9Y6R4 1608 aa21.29■■□□□ 1
HDAC4-207ENST00000461113 KIF27Q86VH2 1401 aa21.27■■□□□ 1
HDAC4-207ENST00000461113 KDM5BQ9UGL1 1544 aa21.25■□□□□ 0.99
HDAC4-207ENST00000461113 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
HDAC4-207ENST00000461113 DISP1Q96F81 1524 aa21.19■□□□□ 0.98
HDAC4-207ENST00000461113 IQGAP2Q13576 1575 aa21.18■□□□□ 0.98
HDAC4-207ENST00000461113 ZCCHC11Q5TAX3 1644 aaKnown RBP21.15■□□□□ 0.98
HDAC4-207ENST00000461113 WDR7Q9Y4E6 1490 aa21.15■□□□□ 0.98
HDAC4-207ENST00000461113 CD109Q6YHK3 1445 aa21.14■□□□□ 0.98
HDAC4-207ENST00000461113 LMTK3Q96Q04 1460 aa21.13■□□□□ 0.97
HDAC4-207ENST00000461113 KCNH8Q96L42 1107 aa21.12■□□□□ 0.97
HDAC4-207ENST00000461113 MAGI3Q5TCQ9 1506 aa21.11■□□□□ 0.97
HDAC4-207ENST00000461113 KIF21BO75037 1637 aa21.07■□□□□ 0.96
HDAC4-207ENST00000461113 PTPRMP28827 1452 aa21.07■□□□□ 0.96
HDAC4-207ENST00000461113 UGGT2Q9NYU1 1516 aa21.04■□□□□ 0.96
HDAC4-207ENST00000461113 KIAA0556O60303 1618 aa21■□□□□ 0.95
HDAC4-207ENST00000461113 CFAP43Q8NDM7 1665 aa20.99■□□□□ 0.95
HDAC4-207ENST00000461113 ARAP3Q8WWN8 1544 aa20.96■□□□□ 0.95
HDAC4-207ENST00000461113 PCF11O94913 1555 aaKnown RBP20.96■□□□□ 0.95
HDAC4-207ENST00000461113 ADAMTSL3P82987 1691 aa20.96■□□□□ 0.95
HDAC4-207ENST00000461113 ILDR2Q71H61 639 aa20.95■□□□□ 0.94
HDAC4-207ENST00000461113 SOCS7O14512 581 aa20.93■□□□□ 0.94
HDAC4-207ENST00000461113 ARID4BQ4LE39 1312 aaPredicted RBP20.93■□□□□ 0.94
HDAC4-207ENST00000461113 RAPGEF3O95398 923 aa20.92■□□□□ 0.94
HDAC4-207ENST00000461113 RAPGEF2Q9Y4G8 1499 aa20.92■□□□□ 0.94
HDAC4-207ENST00000461113 HSPA2P54652 639 aa20.91■□□□□ 0.94
HDAC4-207ENST00000461113 CERKQ8TCT0 537 aa20.91■□□□□ 0.94
HDAC4-207ENST00000461113 DISP3Q9P2K9 1392 aa20.9■□□□□ 0.94
HDAC4-207ENST00000461113 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
HDAC4-207ENST00000461113 ABCA8O94911 1581 aa20.87■□□□□ 0.93
HDAC4-207ENST00000461113 ARID3CA6NKF2 412 aa20.86■□□□□ 0.93
HDAC4-207ENST00000461113 PHLDB1Q86UU1 1377 aa20.85■□□□□ 0.93
HDAC4-207ENST00000461113 MADDQ8WXG6 1647 aa20.84■□□□□ 0.93
HDAC4-207ENST00000461113 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.93
HDAC4-207ENST00000461113 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
HDAC4-207ENST00000461113 BCORL1Q5H9F3 1711 aa20.81■□□□□ 0.92
HDAC4-207ENST00000461113 ATP10BO94823 1461 aa20.75■□□□□ 0.91
HDAC4-207ENST00000461113 NEO1Q92859 1461 aa20.75■□□□□ 0.91
HDAC4-207ENST00000461113 RIMS1Q86UR5 1692 aaKnown RBP20.73■□□□□ 0.91
HDAC4-207ENST00000461113 FRMPD1Q5SYB0 1578 aa20.72■□□□□ 0.91
HDAC4-207ENST00000461113 ABCA9Q8IUA7 1624 aa20.71■□□□□ 0.91
HDAC4-207ENST00000461113 FAM9AQ8IZU1 332 aaPredicted RBP20.71■□□□□ 0.91
HDAC4-207ENST00000461113 EEA1Q15075 1411 aa20.7■□□□□ 0.9
HDAC4-207ENST00000461113 P3H3Q8IVL6 736 aa20.69■□□□□ 0.9
HDAC4-207ENST00000461113 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
HDAC4-207ENST00000461113 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.65■□□□□ 0.9
HDAC4-207ENST00000461113 HNRNPUL2Q1KMD3 747 aaKnown RBP20.65■□□□□ 0.9
HDAC4-207ENST00000461113 ARHGEF40Q8TER5 1519 aa20.64■□□□□ 0.9
HDAC4-207ENST00000461113 POGZQ7Z3K3 1410 aa20.64■□□□□ 0.89
HDAC4-207ENST00000461113 MLECQ14165 292 aa20.64■□□□□ 0.89
HDAC4-207ENST00000461113 CTTNBP2Q8WZ74 1663 aa20.64■□□□□ 0.89
HDAC4-207ENST00000461113 DENND4BO75064 1496 aaPredicted RBP20.62■□□□□ 0.89
HDAC4-207ENST00000461113 AKNAQ7Z591 1439 aa20.61■□□□□ 0.89
HDAC4-207ENST00000461113 FANCAO15360 1455 aa20.6■□□□□ 0.89
HDAC4-207ENST00000461113 FHOD3Q2V2M9 1422 aa20.59■□□□□ 0.89
HDAC4-207ENST00000461113 SPATA31D1Q6ZQQ2 1576 aa20.58■□□□□ 0.88
HDAC4-207ENST00000461113 YEATS2Q9ULM3 1422 aa20.56■□□□□ 0.88
HDAC4-207ENST00000461113 DMRT2Q9Y5R5 561 aa20.56■□□□□ 0.88
HDAC4-207ENST00000461113 CEBPAP49715 358 aaPredicted RBP20.52■□□□□ 0.88
HDAC4-207ENST00000461113 PRXQ9BXM0 1461 aa20.51■□□□□ 0.87
HDAC4-207ENST00000461113 RICTORQ6R327 1708 aa20.51■□□□□ 0.87
HDAC4-207ENST00000461113 ZFYVE16Q7Z3T8 1539 aa20.51■□□□□ 0.87
HDAC4-207ENST00000461113 SIGLEC1Q9BZZ2 1709 aa20.5■□□□□ 0.87
HDAC4-207ENST00000461113 PLEKHD1A6NEE1 506 aa20.49■□□□□ 0.87
HDAC4-207ENST00000461113 TTC37Q6PGP7 1564 aa20.49■□□□□ 0.87
HDAC4-207ENST00000461113 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
HDAC4-207ENST00000461113 ZMYM4Q5VZL5 1548 aa20.48■□□□□ 0.87
HDAC4-207ENST00000461113 RAPGEF6Q8TEU7 1601 aa20.47■□□□□ 0.87
HDAC4-207ENST00000461113 NUP153P49790 1475 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms