RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 KIF13AQ9H1H9 1805 aa25.47■■□□□ 1.67
LYSMD3-202ENST00000453259 MAPKBP1O60336 1514 aa25.42■■□□□ 1.66
LYSMD3-202ENST00000453259 ABCC10Q5T3U5 1492 aa25.4■■□□□ 1.66
LYSMD3-202ENST00000453259 NPM1P06748 294 aaKnown RBP eCLIP25.38■■□□□ 1.65
LYSMD3-202ENST00000453259 KIAA0586Q9BVV6 1533 aa25.36■■□□□ 1.65
LYSMD3-202ENST00000453259 CUL7Q14999 1698 aa25.33■■□□□ 1.65
LYSMD3-202ENST00000453259 KIF27Q86VH2 1401 aa25.3■■□□□ 1.64
LYSMD3-202ENST00000453259 DIP2BQ9P265 1576 aa25.3■■□□□ 1.64
LYSMD3-202ENST00000453259 ADCY10Q96PN6 1610 aa25.3■■□□□ 1.64
LYSMD3-202ENST00000453259 FAM69CQ0P6D2 419 aa25.29■■□□□ 1.64
LYSMD3-202ENST00000453259 IGF1RP08069 1367 aa25.27■■□□□ 1.64
LYSMD3-202ENST00000453259 KDM6BO15054 1643 aa25.15■■□□□ 1.62
LYSMD3-202ENST00000453259 PTPRGP23470 1445 aa25.13■■□□□ 1.61
LYSMD3-202ENST00000453259 CARMIL2Q6F5E8 1435 aa25.13■■□□□ 1.61
LYSMD3-202ENST00000453259 CARMIL1Q5VZK9 1371 aa25.1■■□□□ 1.61
LYSMD3-202ENST00000453259 TNIKQ9UKE5 1360 aa25.08■■□□□ 1.61
LYSMD3-202ENST00000453259 ABCC2Q92887 1545 aa25.08■■□□□ 1.61
LYSMD3-202ENST00000453259 IQGAP2Q13576 1575 aa25.05■■□□□ 1.6
LYSMD3-202ENST00000453259 UHRF1BP1LA0JNW5 1464 aa25.04■■□□□ 1.6
LYSMD3-202ENST00000453259 PLB1Q6P1J6 1458 aa25.04■■□□□ 1.6
LYSMD3-202ENST00000453259 GLI2P10070 1586 aa25.02■■□□□ 1.6
LYSMD3-202ENST00000453259 TSPOAP1O95153 1857 aa25■■□□□ 1.59
LYSMD3-202ENST00000453259 ASXL2Q76L83 1435 aa24.97■■□□□ 1.59
LYSMD3-202ENST00000453259 UACAQ9BZF9 1416 aa24.95■■□□□ 1.58
LYSMD3-202ENST00000453259 KDM4FA0A1W2PPD8 638 aa24.94■■□□□ 1.58
LYSMD3-202ENST00000453259 DISP1Q96F81 1524 aa24.91■■□□□ 1.58
LYSMD3-202ENST00000453259 UGGT2Q9NYU1 1516 aa24.91■■□□□ 1.58
LYSMD3-202ENST00000453259 KDM5BQ9UGL1 1544 aa24.9■■□□□ 1.58
LYSMD3-202ENST00000453259 PPRC1Q5VV67 1664 aaKnown RBP24.88■■□□□ 1.57
LYSMD3-202ENST00000453259 RAPGEF2Q9Y4G8 1499 aa24.88■■□□□ 1.57
LYSMD3-202ENST00000453259 TEX14Q8IWB6 1497 aa24.85■■□□□ 1.57
LYSMD3-202ENST00000453259 TTBK1Q5TCY1 1321 aaPredicted RBP24.84■■□□□ 1.57
LYSMD3-202ENST00000453259 EPRSP07814 1512 aaKnown RBP24.83■■□□□ 1.57
LYSMD3-202ENST00000453259 MAP3K4Q9Y6R4 1608 aa24.83■■□□□ 1.56
LYSMD3-202ENST00000453259 KIAA0556O60303 1618 aa24.81■■□□□ 1.56
LYSMD3-202ENST00000453259 ZCCHC11Q5TAX3 1644 aaKnown RBP24.78■■□□□ 1.56
LYSMD3-202ENST00000453259 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
LYSMD3-202ENST00000453259 ADGRL1O94910 1474 aa24.74■■□□□ 1.55
LYSMD3-202ENST00000453259 WDR7Q9Y4E6 1490 aa24.73■■□□□ 1.55
LYSMD3-202ENST00000453259 GOLGA3Q08378 1498 aa24.72■■□□□ 1.55
LYSMD3-202ENST00000453259 COL17A1Q9UMD9 1497 aaPredicted RBP24.7■■□□□ 1.54
LYSMD3-202ENST00000453259 CTTNBP2Q8WZ74 1663 aa24.68■■□□□ 1.54
LYSMD3-202ENST00000453259 MAGI3Q5TCQ9 1506 aa24.64■■□□□ 1.53
LYSMD3-202ENST00000453259 CFAP43Q8NDM7 1665 aa24.62■■□□□ 1.53
LYSMD3-202ENST00000453259 ABCA8O94911 1581 aa24.6■■□□□ 1.53
LYSMD3-202ENST00000453259 CD109Q6YHK3 1445 aa24.57■■□□□ 1.52
LYSMD3-202ENST00000453259 PRXQ9BXM0 1461 aa24.55■■□□□ 1.52
LYSMD3-202ENST00000453259 FAM9AQ8IZU1 332 aaPredicted RBP24.54■■□□□ 1.52
LYSMD3-202ENST00000453259 HECW2Q9P2P5 1572 aa24.49■■□□□ 1.51
LYSMD3-202ENST00000453259 PHLDB1Q86UU1 1377 aa24.46■■□□□ 1.51
LYSMD3-202ENST00000453259 ILDR1Q86SU0 546 aaPredicted RBP24.46■■□□□ 1.51
LYSMD3-202ENST00000453259 ARAP3Q8WWN8 1544 aa24.45■■□□□ 1.51
LYSMD3-202ENST00000453259 KCNH8Q96L42 1107 aa24.43■■□□□ 1.5
LYSMD3-202ENST00000453259 ABCA9Q8IUA7 1624 aa24.37■■□□□ 1.49
LYSMD3-202ENST00000453259 ATP10BO94823 1461 aa24.36■■□□□ 1.49
LYSMD3-202ENST00000453259 SAMD9Q5K651 1589 aa24.33■■□□□ 1.49
LYSMD3-202ENST00000453259 KIF21BO75037 1637 aa24.33■■□□□ 1.49
LYSMD3-202ENST00000453259 NEO1Q92859 1461 aa24.32■■□□□ 1.48
LYSMD3-202ENST00000453259 RAPGEF6Q8TEU7 1601 aa24.28■■□□□ 1.48
LYSMD3-202ENST00000453259 ADAMTSL3P82987 1691 aa24.22■■□□□ 1.47
LYSMD3-202ENST00000453259 EEA1Q15075 1411 aa24.22■■□□□ 1.47
LYSMD3-202ENST00000453259 CSRNP3Q8WYN3 585 aa24.22■■□□□ 1.47
LYSMD3-202ENST00000453259 P3H3Q8IVL6 736 aa24.2■■□□□ 1.46
LYSMD3-202ENST00000453259 PTPRMP28827 1452 aa24.19■■□□□ 1.46
LYSMD3-202ENST00000453259 NUP153P49790 1475 aaKnown RBP24.18■■□□□ 1.46
LYSMD3-202ENST00000453259 ARID3CA6NKF2 412 aa24.17■■□□□ 1.46
LYSMD3-202ENST00000453259 FRMPD1Q5SYB0 1578 aa24.15■■□□□ 1.46
LYSMD3-202ENST00000453259 BCORL1Q5H9F3 1711 aa24.13■■□□□ 1.45
LYSMD3-202ENST00000453259 RAPGEF3O95398 923 aa24.13■■□□□ 1.45
LYSMD3-202ENST00000453259 CFAP74Q9C0B2 1584 aa24.12■■□□□ 1.45
LYSMD3-202ENST00000453259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.12■■□□□ 1.45
LYSMD3-202ENST00000453259 HNRNPUL2Q1KMD3 747 aaKnown RBP24.12■■□□□ 1.45
LYSMD3-202ENST00000453259 ARHGEF40Q8TER5 1519 aa24.1■■□□□ 1.45
LYSMD3-202ENST00000453259 EFCAB5A4FU69 1503 aa24.1■■□□□ 1.45
LYSMD3-202ENST00000453259 DENND4BO75064 1496 aaPredicted RBP24.08■■□□□ 1.45
LYSMD3-202ENST00000453259 PLEKHD1A6NEE1 506 aa24.08■■□□□ 1.45
LYSMD3-202ENST00000453259 FHOD3Q2V2M9 1422 aa24.07■■□□□ 1.44
LYSMD3-202ENST00000453259 FBXO41Q8TF61 875 aa24.06■■□□□ 1.44
LYSMD3-202ENST00000453259 PCF11O94913 1555 aaKnown RBP24.06■■□□□ 1.44
LYSMD3-202ENST00000453259 MADDQ8WXG6 1647 aa24.05■■□□□ 1.44
LYSMD3-202ENST00000453259 RICTORQ6R327 1708 aa24.04■■□□□ 1.44
LYSMD3-202ENST00000453259 FANCAO15360 1455 aa24.04■■□□□ 1.44
LYSMD3-202ENST00000453259 ARID4BQ4LE39 1312 aaPredicted RBP24.04■■□□□ 1.44
LYSMD3-202ENST00000453259 ZMYM4Q5VZL5 1548 aa24.04■■□□□ 1.44
LYSMD3-202ENST00000453259 AKNAQ7Z591 1439 aa24.03■■□□□ 1.44
LYSMD3-202ENST00000453259 POGZQ7Z3K3 1410 aa24.02■■□□□ 1.44
LYSMD3-202ENST00000453259 MAGI2Q86UL8 1455 aa24.02■■□□□ 1.44
LYSMD3-202ENST00000453259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24■■□□□ 1.43
LYSMD3-202ENST00000453259 LMTK3Q96Q04 1460 aa24■■□□□ 1.43
LYSMD3-202ENST00000453259 TTC37Q6PGP7 1564 aa23.95■■□□□ 1.42
LYSMD3-202ENST00000453259 ZFYVE16Q7Z3T8 1539 aa23.94■■□□□ 1.42
LYSMD3-202ENST00000453259 RIMS1Q86UR5 1692 aaKnown RBP23.93■■□□□ 1.42
LYSMD3-202ENST00000453259 PLCH2O75038 1416 aa23.89■■□□□ 1.41
LYSMD3-202ENST00000453259 RANGAP1P46060 587 aaPredicted RBP23.88■■□□□ 1.41
LYSMD3-202ENST00000453259 FMN1Q68DA7 1419 aa23.87■■□□□ 1.41
LYSMD3-202ENST00000453259 YEATS2Q9ULM3 1422 aa23.85■■□□□ 1.41
LYSMD3-202ENST00000453259 HECW1Q76N89 1606 aa23.85■■□□□ 1.41
LYSMD3-202ENST00000453259 CDK13Q14004 1512 aaKnown RBP23.84■■□□□ 1.41
LYSMD3-202ENST00000453259 SCAPERQ9BY12 1400 aa23.84■■□□□ 1.41
LYSMD3-202ENST00000453259 CDK11AQ9UQ88 783 aaPredicted RBP23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms