RNA–Protein interactions for RNA: ENST00000452448.6

EPHA3-202, Transcript of EPH receptor A3, humanhuman

TSL 1 (best) BASIC

Gene EPHA3, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-202ENST00000452448 SPDYE4A6NLX3 237 aa7.43□□□□□ -1.22
EPHA3-202ENST00000452448 FGD1P98174 961 aa7.43□□□□□ -1.22
EPHA3-202ENST00000452448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.41□□□□□ -1.22
EPHA3-202ENST00000452448 HNRNPUL2Q1KMD3 747 aaKnown RBP7.41□□□□□ -1.22
EPHA3-202ENST00000452448 BRD2P25440 801 aaKnown RBP7.4□□□□□ -1.22
EPHA3-202ENST00000452448 PPARGC1BQ86YN6 1023 aaKnown RBP7.38□□□□□ -1.23
EPHA3-202ENST00000452448 IFNLR1Q8IU57 520 aaPredicted RBP7.38□□□□□ -1.23
EPHA3-202ENST00000452448 SALL2Q9Y467 1007 aaPredicted RBP7.37□□□□□ -1.23
EPHA3-202ENST00000452448 CCDC136Q96JN2 1154 aa7.37□□□□□ -1.23
EPHA3-202ENST00000452448 A0A0U1RQG5 324 aaPredicted RBP7.34□□□□□ -1.23
EPHA3-202ENST00000452448 ACIN1Q9UKV3 1341 aaKnown RBP7.34□□□□□ -1.23
EPHA3-202ENST00000452448 RB1CC1Q8TDY2 1594 aa7.33□□□□□ -1.24
EPHA3-202ENST00000452448 PAXIP1Q6ZW49 1069 aaPredicted RBP7.31□□□□□ -1.24
EPHA3-202ENST00000452448 OSCARQ8IYS5 282 aa7.31□□□□□ -1.24
EPHA3-202ENST00000452448 CDK11BP21127 795 aaKnown RBP7.3□□□□□ -1.24
EPHA3-202ENST00000452448 NBR1Q14596 966 aa7.3□□□□□ -1.24
EPHA3-202ENST00000452448 CFAP44Q96MT7 982 aa7.3□□□□□ -1.24
EPHA3-202ENST00000452448 CDK11AQ9UQ88 783 aaPredicted RBP7.3□□□□□ -1.24
EPHA3-202ENST00000452448 ZEB1P37275 1124 aaPredicted RBP7.29□□□□□ -1.24
EPHA3-202ENST00000452448 AAMPQ13685 434 aa7.29□□□□□ -1.24
EPHA3-202ENST00000452448 VASPP50552 380 aaPredicted RBP7.29□□□□□ -1.24
EPHA3-202ENST00000452448 PROM2Q8N271 834 aa7.27□□□□□ -1.25
EPHA3-202ENST00000452448 TSHZ2Q9NRE2 1034 aa7.27□□□□□ -1.25
EPHA3-202ENST00000452448 DSG3P32926 999 aa7.26□□□□□ -1.25
EPHA3-202ENST00000452448 PKD2Q13563 968 aa7.25□□□□□ -1.25
EPHA3-202ENST00000452448 ERICH6BQ5W0A0 696 aa7.25□□□□□ -1.25
EPHA3-202ENST00000452448 RSPH4AQ5TD94 716 aa7.24□□□□□ -1.25
EPHA3-202ENST00000452448 CLSPNQ9HAW4 1339 aa7.23□□□□□ -1.25
EPHA3-202ENST00000452448 RSPH6AQ9H0K4 717 aa7.23□□□□□ -1.25
EPHA3-202ENST00000452448 RBM10P98175 930 aaKnown RBP7.22□□□□□ -1.25
EPHA3-202ENST00000452448 NEUROD1Q13562 356 aa7.22□□□□□ -1.25
EPHA3-202ENST00000452448 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.22□□□□□ -1.25
EPHA3-202ENST00000452448 SHROOM4Q9ULL8 1493 aa7.22□□□□□ -1.25
EPHA3-202ENST00000452448 HSP90B1P14625 803 aaKnown RBP7.21□□□□□ -1.26
EPHA3-202ENST00000452448 NACADO15069 1562 aa7.2□□□□□ -1.26
EPHA3-202ENST00000452448 IRX6P78412 446 aaPredicted RBP7.2□□□□□ -1.26
EPHA3-202ENST00000452448 IGSF3O75054 1194 aa7.19□□□□□ -1.26
EPHA3-202ENST00000452448 NPM1P06748 294 aaKnown RBP eCLIP7.19□□□□□ -1.26
EPHA3-202ENST00000452448 DEKP35659 375 aaKnown RBP7.19□□□□□ -1.26
EPHA3-202ENST00000452448 ZNF326Q5BKZ1 582 aaKnown RBP7.19□□□□□ -1.26
EPHA3-202ENST00000452448 NAP1L5Q96NT1 182 aaPredicted RBP7.19□□□□□ -1.26
EPHA3-202ENST00000452448 C1QBPQ07021 282 aaKnown RBP7.18□□□□□ -1.26
EPHA3-202ENST00000452448 BBXQ8WY36 941 aaPredicted RBP7.17□□□□□ -1.26
EPHA3-202ENST00000452448 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.17□□□□□ -1.26
EPHA3-202ENST00000452448 POLR3GLQ9BT43 218 aa7.17□□□□□ -1.26
EPHA3-202ENST00000452448 ZNF692Q9BU19 519 aaPredicted RBP7.15□□□□□ -1.27
EPHA3-202ENST00000452448 ZMYND15Q9H091 742 aa7.15□□□□□ -1.27
EPHA3-202ENST00000452448 PABPN1Q86U42 306 aaKnown RBP eCLIP7.14□□□□□ -1.27
EPHA3-202ENST00000452448 GLIPR1L2Q4G1C9 344 aa7.13□□□□□ -1.27
EPHA3-202ENST00000452448 BCCIPQ9P287 314 aaKnown RBP eCLIP7.13□□□□□ -1.27
EPHA3-202ENST00000452448 ARID3AQ99856 593 aa7.13□□□□□ -1.27
EPHA3-202ENST00000452448 CCDC9Q9Y3X0 531 aaKnown RBP7.12□□□□□ -1.27
EPHA3-202ENST00000452448 CUX2O14529 1486 aa7.1□□□□□ -1.27
EPHA3-202ENST00000452448 RGL2O15211 777 aa7.1□□□□□ -1.27
EPHA3-202ENST00000452448 CECR2Q9BXF3 1484 aa7.08□□□□□ -1.28
EPHA3-202ENST00000452448 SPRYD3Q8NCJ5 442 aa7.06□□□□□ -1.28
EPHA3-202ENST00000452448 MYT1LQ9UL68 1186 aa7.06□□□□□ -1.28
EPHA3-202ENST00000452448 MYO15BQ96JP2 1530 aa7.06□□□□□ -1.28
EPHA3-202ENST00000452448 BRPF1P55201 1214 aaPredicted RBP7.04□□□□□ -1.28
EPHA3-202ENST00000452448 NAP1L2Q9ULW6 460 aaPredicted RBP7.04□□□□□ -1.28
EPHA3-202ENST00000452448 SSUH2Q9Y2M2 353 aa7.04□□□□□ -1.28
EPHA3-202ENST00000452448 HMGB1P09429 215 aaKnown RBP7.04□□□□□ -1.28
EPHA3-202ENST00000452448 NECTIN2Q92692 538 aa7.04□□□□□ -1.28
EPHA3-202ENST00000452448 BRPF3Q9ULD4 1205 aa7.04□□□□□ -1.28
EPHA3-202ENST00000452448 MIER1Q8N108 512 aa7.03□□□□□ -1.28
EPHA3-202ENST00000452448 ZBTB7CA1YPR0 619 aa7.02□□□□□ -1.29
EPHA3-202ENST00000452448 PLCD3Q8N3E9 789 aa7.02□□□□□ -1.29
EPHA3-202ENST00000452448 CACNB1Q02641 598 aaPredicted RBP7.01□□□□□ -1.29
EPHA3-202ENST00000452448 RNF25Q96BH1 459 aaPredicted RBP7□□□□□ -1.29
EPHA3-202ENST00000452448 ZFP91Q96JP5 570 aaPredicted RBP7□□□□□ -1.29
EPHA3-202ENST00000452448 ECM2O94769 699 aaPredicted RBP6.99□□□□□ -1.29
EPHA3-202ENST00000452448 C1orf115Q9H7X2 142 aa6.99□□□□□ -1.29
EPHA3-202ENST00000452448 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.98□□□□□ -1.29
EPHA3-202ENST00000452448 ZCCHC6Q5VYS8 1495 aaKnown RBP6.98□□□□□ -1.29
EPHA3-202ENST00000452448 PUS7Q96PZ0 661 aaKnown RBP6.98□□□□□ -1.29
EPHA3-202ENST00000452448 TICAM2Q86XR7 235 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 CNPY4Q8N129 248 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 PRDM10Q9NQV6 1147 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 CC2D2AQ9P2K1 1620 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 ZNF592Q92610 1267 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 CHMP4BQ9H444 224 aaKnown RBP6.97□□□□□ -1.29
EPHA3-202ENST00000452448 BICRAQ9NZM4 1560 aa6.97□□□□□ -1.29
EPHA3-202ENST00000452448 CIZ1Q9ULV3 898 aaPredicted RBP6.96□□□□□ -1.29
EPHA3-202ENST00000452448 NCLP19338 710 aaKnown RBP6.96□□□□□ -1.3
EPHA3-202ENST00000452448 TMED8Q6PL24 325 aaPredicted RBP6.96□□□□□ -1.3
EPHA3-202ENST00000452448 SPDYE2BA6NHP3 402 aa6.95□□□□□ -1.3
EPHA3-202ENST00000452448 SPDYE6P0CI01 402 aa6.95□□□□□ -1.3
EPHA3-202ENST00000452448 SPDYE2Q495Y8 402 aa6.95□□□□□ -1.3
EPHA3-202ENST00000452448 IPO4Q8TEX9 1081 aaKnown RBP6.94□□□□□ -1.3
EPHA3-202ENST00000452448 TEX2Q8IWB9 1127 aa6.94□□□□□ -1.3
EPHA3-202ENST00000452448 SPOCK2Q92563 424 aa6.94□□□□□ -1.3
EPHA3-202ENST00000452448 SECISBP2LQ93073 1101 aaKnown RBP6.94□□□□□ -1.3
EPHA3-202ENST00000452448 ZBTB12Q9Y330 459 aaPredicted RBP6.92□□□□□ -1.3
EPHA3-202ENST00000452448 CHGAP10645 457 aaKnown RBP6.91□□□□□ -1.3
EPHA3-202ENST00000452448 PCGF6Q9BYE7 350 aa6.91□□□□□ -1.3
EPHA3-202ENST00000452448 CLEC11AQ9Y240 323 aa6.91□□□□□ -1.3
EPHA3-202ENST00000452448 ARID3CA6NKF2 412 aa6.91□□□□□ -1.3
EPHA3-202ENST00000452448 NEUROD2Q15784 382 aa6.91□□□□□ -1.3
EPHA3-202ENST00000452448 ZNF428Q96B54 188 aa6.9□□□□□ -1.3
EPHA3-202ENST00000452448 UNC13AQ9UPW8 1703 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms