RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
USP39-207ENST00000450066 MAGI1Q96QZ7 1491 aaPredicted RBP22.29■■□□□ 1.16
USP39-207ENST00000450066 PCGF6Q9BYE7 350 aa22.27■■□□□ 1.16
USP39-207ENST00000450066 EFCAB5A4FU69 1503 aa22.24■■□□□ 1.15
USP39-207ENST00000450066 PPARGC1BQ86YN6 1023 aaKnown RBP22.22■■□□□ 1.15
USP39-207ENST00000450066 SYNJ2O15056 1496 aa22.21■■□□□ 1.15
USP39-207ENST00000450066 GRIN2AQ12879 1464 aa22.2■■□□□ 1.14
USP39-207ENST00000450066 APLP2Q06481 763 aa22.15■■□□□ 1.14
USP39-207ENST00000450066 CHMP7Q8WUX9 453 aaPredicted RBP22.15■■□□□ 1.14
USP39-207ENST00000450066 IQGAP2Q13576 1575 aa22.15■■□□□ 1.14
USP39-207ENST00000450066 SAMD9Q5K651 1589 aa22.14■■□□□ 1.13
USP39-207ENST00000450066 KIAA0586Q9BVV6 1533 aa22.12■■□□□ 1.13
USP39-207ENST00000450066 FHOD3Q2V2M9 1422 aa22.11■■□□□ 1.13
USP39-207ENST00000450066 P3H3Q8IVL6 736 aa22.1■■□□□ 1.13
USP39-207ENST00000450066 FBLN2P98095 1184 aa22.07■■□□□ 1.12
USP39-207ENST00000450066 UGGT2Q9NYU1 1516 aa22.05■■□□□ 1.12
USP39-207ENST00000450066 FMN1Q68DA7 1419 aa22.05■■□□□ 1.12
USP39-207ENST00000450066 NUP160Q12769 1436 aa22.05■■□□□ 1.12
USP39-207ENST00000450066 CEP170Q5SW79 1584 aa22.05■■□□□ 1.12
USP39-207ENST00000450066 TTBK1Q5TCY1 1321 aaPredicted RBP22.02■■□□□ 1.12
USP39-207ENST00000450066 MAP3K1Q13233 1512 aa22.01■■□□□ 1.11
USP39-207ENST00000450066 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
USP39-207ENST00000450066 PCF11O94913 1555 aaKnown RBP22■■□□□ 1.11
USP39-207ENST00000450066 FYCO1Q9BQS8 1478 aa21.99■■□□□ 1.11
USP39-207ENST00000450066 TIAM1Q13009 1591 aa21.95■■□□□ 1.1
USP39-207ENST00000450066 KANK4Q5T7N3 995 aaPredicted RBP21.94■■□□□ 1.1
USP39-207ENST00000450066 DISP1Q96F81 1524 aa21.94■■□□□ 1.1
USP39-207ENST00000450066 CHD1O14646 1710 aa21.92■■□□□ 1.1
USP39-207ENST00000450066 KIAA0556O60303 1618 aa21.92■■□□□ 1.1
USP39-207ENST00000450066 CFAP43Q8NDM7 1665 aa21.89■■□□□ 1.09
USP39-207ENST00000450066 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
USP39-207ENST00000450066 ATP1B4Q9UN42 357 aaPredicted RBP21.87■■□□□ 1.09
USP39-207ENST00000450066 LRRC9Q6ZRR7 1453 aa21.86■■□□□ 1.09
USP39-207ENST00000450066 CARMIL2Q6F5E8 1435 aa21.84■■□□□ 1.09
USP39-207ENST00000450066 HECW1Q76N89 1606 aa21.79■■□□□ 1.08
USP39-207ENST00000450066 LRRIQ1Q96JM4 1722 aa21.77■■□□□ 1.08
USP39-207ENST00000450066 CCDC18Q5T9S5 1454 aa21.77■■□□□ 1.08
USP39-207ENST00000450066 SHROOM2Q13796 1616 aa21.73■■□□□ 1.07
USP39-207ENST00000450066 PRG4Q92954 1404 aaPredicted RBP21.73■■□□□ 1.07
USP39-207ENST00000450066 RRBP1Q9P2E9 1410 aaKnown RBP21.72■■□□□ 1.07
USP39-207ENST00000450066 EPRSP07814 1512 aaKnown RBP21.72■■□□□ 1.07
USP39-207ENST00000450066 RAPGEF6Q8TEU7 1601 aa21.7■■□□□ 1.07
USP39-207ENST00000450066 CLASP1Q7Z460 1538 aa21.69■■□□□ 1.06
USP39-207ENST00000450066 MTUS2Q5JR59 1369 aa21.69■■□□□ 1.06
USP39-207ENST00000450066 NUP153P49790 1475 aaKnown RBP21.67■■□□□ 1.06
USP39-207ENST00000450066 EHBP1L1Q8N3D4 1523 aa21.65■■□□□ 1.06
USP39-207ENST00000450066 PHLDB1Q86UU1 1377 aa21.65■■□□□ 1.06
USP39-207ENST00000450066 HRCP23327 699 aa21.65■■□□□ 1.06
USP39-207ENST00000450066 CCNB3Q8WWL7 1395 aa21.65■■□□□ 1.06
USP39-207ENST00000450066 PLB1Q6P1J6 1458 aa21.64■■□□□ 1.06
USP39-207ENST00000450066 CDK13Q14004 1512 aaKnown RBP21.63■■□□□ 1.05
USP39-207ENST00000450066 MAGI3Q5TCQ9 1506 aa21.61■■□□□ 1.05
USP39-207ENST00000450066 PTPRGP23470 1445 aa21.61■■□□□ 1.05
USP39-207ENST00000450066 ABCA8O94911 1581 aa21.61■■□□□ 1.05
USP39-207ENST00000450066 SUPT6HQ7KZ85 1726 aaKnown RBP21.59■■□□□ 1.05
USP39-207ENST00000450066 HNRNPUL2Q1KMD3 747 aaKnown RBP21.58■■□□□ 1.05
USP39-207ENST00000450066 NCOA2Q15596 1464 aa21.58■■□□□ 1.04
USP39-207ENST00000450066 ARID3CA6NKF2 412 aa21.56■■□□□ 1.04
USP39-207ENST00000450066 ARHGEF11O15085 1522 aa21.55■■□□□ 1.04
USP39-207ENST00000450066 CDK11AQ9UQ88 783 aaPredicted RBP21.55■■□□□ 1.04
USP39-207ENST00000450066 ERCC6L2Q5T890 1561 aa21.54■■□□□ 1.04
USP39-207ENST00000450066 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.51■■□□□ 1.031e-6■□□□□ 11
USP39-207ENST00000450066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.51■■□□□ 1.03
USP39-207ENST00000450066 FGD6Q6ZV73 1430 aa21.5■■□□□ 1.03
USP39-207ENST00000450066 MYOM3Q5VTT5 1437 aa21.5■■□□□ 1.03
USP39-207ENST00000450066 OSCARQ8IYS5 282 aa21.49■■□□□ 1.03
USP39-207ENST00000450066 UACAQ9BZF9 1416 aa21.49■■□□□ 1.03
USP39-207ENST00000450066 ATP10BO94823 1461 aa21.47■■□□□ 1.03
USP39-207ENST00000450066 TROQ12816 1431 aaPredicted RBP21.46■■□□□ 1.03
USP39-207ENST00000450066 FAM50AQ14320 339 aaKnown RBP21.45■■□□□ 1.02
USP39-207ENST00000450066 ZEB1P37275 1124 aaPredicted RBP21.42■■□□□ 1.02
USP39-207ENST00000450066 ABCC2Q92887 1545 aa21.42■■□□□ 1.02
USP39-207ENST00000450066 CCER1Q8TC90 406 aaPredicted RBP21.4■■□□□ 1.02
USP39-207ENST00000450066 ADCY10Q96PN6 1610 aa21.4■■□□□ 1.02
USP39-207ENST00000450066 PLEKHD1A6NEE1 506 aa21.4■■□□□ 1.02
USP39-207ENST00000450066 ITGAEP38570 1179 aa21.4■■□□□ 1.02
USP39-207ENST00000450066 MIA2Q96PC5 1412 aa21.39■■□□□ 1.02
USP39-207ENST00000450066 UHRF1BP1LA0JNW5 1464 aa21.38■■□□□ 1.01
USP39-207ENST00000450066 PTPN23Q9H3S7 1636 aa21.37■■□□□ 1.01
USP39-207ENST00000450066 TCOF1Q13428 1488 aaKnown RBP21.36■■□□□ 1.01
USP39-207ENST00000450066 KIF14Q15058 1648 aa21.33■■□□□ 1
USP39-207ENST00000450066 KDM5BQ9UGL1 1544 aa21.29■■□□□ 1
USP39-207ENST00000450066 ITSN2Q9NZM3 1697 aa21.28■■□□□ 1
USP39-207ENST00000450066 GPATCH8Q9UKJ3 1502 aaKnown RBP21.27■■□□□ 1
USP39-207ENST00000450066 ABCC10Q5T3U5 1492 aa21.27■■□□□ 1
USP39-207ENST00000450066 SETD5Q9C0A6 1442 aa21.26■□□□□ 0.99
USP39-207ENST00000450066 ZCCHC11Q5TAX3 1644 aaKnown RBP21.25■□□□□ 0.99
USP39-207ENST00000450066 PTPRKQ15262 1439 aa21.24■□□□□ 0.99
USP39-207ENST00000450066 CFDP1Q9UEE9 299 aaPredicted RBP21.23■□□□□ 0.99
USP39-207ENST00000450066 RAB3GAP2Q9H2M9 1393 aa21.22■□□□□ 0.99
USP39-207ENST00000450066 CDC42BPAQ5VT25 1732 aa21.2■□□□□ 0.98
USP39-207ENST00000450066 HFM1A2PYH4 1435 aa21.18■□□□□ 0.98
USP39-207ENST00000450066 ZNF644Q9H582 1327 aaPredicted RBP21.17■□□□□ 0.98
USP39-207ENST00000450066 DHX57Q6P158 1386 aaKnown RBP21.17■□□□□ 0.98
USP39-207ENST00000450066 CAMSAP2Q08AD1 1489 aa21.17■□□□□ 0.98
USP39-207ENST00000450066 DNMT1P26358 1616 aaKnown RBP21.16■□□□□ 0.98
USP39-207ENST00000450066 DAPK1P53355 1430 aa21.14■□□□□ 0.98
USP39-207ENST00000450066 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.14■□□□□ 0.97
USP39-207ENST00000450066 CLSPNQ9HAW4 1339 aa21.14■□□□□ 0.97
USP39-207ENST00000450066 AKNAQ7Z591 1439 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms