RNA–Protein interactions for RNA: ENST00000448223.6

SMC6-207, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,233 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-207ENST00000448223 TRIM44Q96DX7 344 aaPredicted RBP12.49□□□□□ -0.41
SMC6-207ENST00000448223 NAP1L5Q96NT1 182 aaPredicted RBP12.49□□□□□ -0.41
SMC6-207ENST00000448223 NCLP19338 710 aaKnown RBP12.48□□□□□ -0.41
SMC6-207ENST00000448223 EIF4G1Q04637 1599 aaKnown RBP12.48□□□□□ -0.41
SMC6-207ENST00000448223 SENP3-EIF4A1A0A087X0R7 540 aa12.47□□□□□ -0.41
SMC6-207ENST00000448223 NEFMP07197 916 aa12.47□□□□□ -0.41
SMC6-207ENST00000448223 SUPT16HQ9Y5B9 1047 aaKnown RBP12.47□□□□□ -0.41
SMC6-207ENST00000448223 RAPGEF2Q9Y4G8 1499 aa12.46□□□□□ -0.41
SMC6-207ENST00000448223 HSP90AA1P07900 732 aaKnown RBP12.44□□□□□ -0.42
SMC6-207ENST00000448223 BAZ1BQ9UIG0 1483 aaKnown RBP12.42□□□□□ -0.42
SMC6-207ENST00000448223 CHIC2Q9UKJ5 165 aa12.41□□□□□ -0.42
SMC6-207ENST00000448223 ZNF326Q5BKZ1 582 aaKnown RBP12.41□□□□□ -0.42
SMC6-207ENST00000448223 UPF2Q9HAU5 1272 aaKnown RBP12.4□□□□□ -0.42
SMC6-207ENST00000448223 AMER1Q5JTC6 1135 aaPredicted RBP12.39□□□□□ -0.43
SMC6-207ENST00000448223 DEKP35659 375 aaKnown RBP12.38□□□□□ -0.43
SMC6-207ENST00000448223 SYNJ1O43426 1573 aa12.38□□□□□ -0.43
SMC6-207ENST00000448223 HNRNPUQ00839 825 aaKnown RBP eCLIP12.38□□□□□ -0.43
SMC6-207ENST00000448223 DHX57Q6P158 1386 aaKnown RBP12.37□□□□□ -0.43
SMC6-207ENST00000448223 CANXP27824 592 aaKnown RBP12.37□□□□□ -0.43
SMC6-207ENST00000448223 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.35□□□□□ -0.43
SMC6-207ENST00000448223 CCDC136Q96JN2 1154 aa12.34□□□□□ -0.43
SMC6-207ENST00000448223 KIF21BO75037 1637 aa12.33□□□□□ -0.43
SMC6-207ENST00000448223 FAM9BQ8IZU0 186 aa12.33□□□□□ -0.44
SMC6-207ENST00000448223 PPM1GO15355 546 aaPredicted RBP12.32□□□□□ -0.44
SMC6-207ENST00000448223 CCNB3Q8WWL7 1395 aa12.31□□□□□ -0.44
SMC6-207ENST00000448223 TONSLQ96HA7 1378 aa12.3□□□□□ -0.44
SMC6-207ENST00000448223 DDRGK1Q96HY6 314 aa12.3□□□□□ -0.44
SMC6-207ENST00000448223 RRP7BPQ9NSQ0 103 aa12.3□□□□□ -0.44
SMC6-207ENST00000448223 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
SMC6-207ENST00000448223 SLC4A1APQ9BWU0 796 aaKnown RBP12.28□□□□□ -0.44
SMC6-207ENST00000448223 TSHZ2Q9NRE2 1034 aa12.28□□□□□ -0.44
SMC6-207ENST00000448223 KIF27Q86VH2 1401 aa12.27□□□□□ -0.44
SMC6-207ENST00000448223 SLC24A1O60721 1099 aa12.26□□□□□ -0.45
SMC6-207ENST00000448223 DNTTIP2Q5QJE6 756 aaKnown RBP12.25□□□□□ -0.45
SMC6-207ENST00000448223 PRKCSHP14314 528 aaPredicted RBP12.25□□□□□ -0.45
SMC6-207ENST00000448223 NOP58Q9Y2X3 529 aaKnown RBP12.24□□□□□ -0.45
SMC6-207ENST00000448223 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
SMC6-207ENST00000448223 SALL2Q9Y467 1007 aaPredicted RBP12.24□□□□□ -0.45
SMC6-207ENST00000448223 UNC13AQ9UPW8 1703 aa12.23□□□□□ -0.45
SMC6-207ENST00000448223 VSIG10Q8N0Z9 540 aa12.22□□□□□ -0.45
SMC6-207ENST00000448223 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.45
SMC6-207ENST00000448223 ARAP1Q96P48 1450 aa12.21□□□□□ -0.46
SMC6-207ENST00000448223 BECN1Q14457 450 aa12.2□□□□□ -0.46
SMC6-207ENST00000448223 PTMAP06454 111 aaKnown RBP12.19□□□□□ -0.46
SMC6-207ENST00000448223 FOXD1Q16676 465 aa12.19□□□□□ -0.46
SMC6-207ENST00000448223 FBLN2P98095 1184 aa12.18□□□□□ -0.46
SMC6-207ENST00000448223 LAS1LQ9Y4W2 734 aaKnown RBP12.18□□□□□ -0.46
SMC6-207ENST00000448223 MTUS2Q5JR59 1369 aa12.17□□□□□ -0.46
SMC6-207ENST00000448223 SETD5Q9C0A6 1442 aa12.17□□□□□ -0.46
SMC6-207ENST00000448223 ARID4BQ4LE39 1312 aaPredicted RBP12.16□□□□□ -0.46
SMC6-207ENST00000448223 MRS2Q9HD23 443 aa12.16□□□□□ -0.46
SMC6-207ENST00000448223 CUX2O14529 1486 aa12.16□□□□□ -0.46
SMC6-207ENST00000448223 GOLGA6L22H0YM25 854 aa12.15□□□□□ -0.46
SMC6-207ENST00000448223 TNNT3P45378 269 aaPredicted RBP12.15□□□□□ -0.46
SMC6-207ENST00000448223 PODXL2Q9NZ53 605 aa12.15□□□□□ -0.46
SMC6-207ENST00000448223 RBM19Q9Y4C8 960 aaKnown RBP12.15□□□□□ -0.46
SMC6-207ENST00000448223 BICRAQ9NZM4 1560 aa12.15□□□□□ -0.46
SMC6-207ENST00000448223 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
SMC6-207ENST00000448223 RRBP1Q9P2E9 1410 aaKnown RBP12.13□□□□□ -0.47
SMC6-207ENST00000448223 PNNQ9H307 717 aaKnown RBP12.13□□□□□ -0.47
SMC6-207ENST00000448223 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
SMC6-207ENST00000448223 HSP90AA2PQ14568 343 aaPredicted RBP12.12□□□□□ -0.47
SMC6-207ENST00000448223 CARMIL1Q5VZK9 1371 aa12.12□□□□□ -0.47
SMC6-207ENST00000448223 B4GALNT3Q6L9W6 998 aa12.12□□□□□ -0.47
SMC6-207ENST00000448223 L1TD1Q5T7N2 865 aaKnown RBP12.11□□□□□ -0.47
SMC6-207ENST00000448223 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.11□□□□□ -0.47
SMC6-207ENST00000448223 PKNOX2Q96KN3 472 aa12.11□□□□□ -0.47
SMC6-207ENST00000448223 ERICH3Q5RHP9 1530 aa12.1□□□□□ -0.47
SMC6-207ENST00000448223 ARHGAP35Q9NRY4 1499 aa12.1□□□□□ -0.47
SMC6-207ENST00000448223 RSPH6AQ9H0K4 717 aa12.09□□□□□ -0.47
SMC6-207ENST00000448223 KDM2AQ9Y2K7 1162 aa12.09□□□□□ -0.47
SMC6-207ENST00000448223 PPP1R15AO75807 674 aaPredicted RBP12.09□□□□□ -0.47
SMC6-207ENST00000448223 A0A0U1RQG5 324 aaPredicted RBP12.08□□□□□ -0.48
SMC6-207ENST00000448223 EIF4G2P78344 907 aaKnown RBP eCLIP12.07□□□□□ -0.481e-6■■■■■ 29.4
SMC6-207ENST00000448223 PEG3Q9GZU2 1588 aa12.07□□□□□ -0.48
SMC6-207ENST00000448223 MSNP26038 577 aaKnown RBP12.06□□□□□ -0.48
SMC6-207ENST00000448223 PHLDB1Q86UU1 1377 aa12.06□□□□□ -0.48
SMC6-207ENST00000448223 CUX1P39880 1505 aa12.06□□□□□ -0.48
SMC6-207ENST00000448223 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
SMC6-207ENST00000448223 HSPA5P11021 654 aaKnown RBP12.04□□□□□ -0.48
SMC6-207ENST00000448223 CCER2I3L3R5 266 aa12.04□□□□□ -0.48
SMC6-207ENST00000448223 FHAD1B1AJZ9 1412 aa12.04□□□□□ -0.48
SMC6-207ENST00000448223 CHAF1AQ13111 956 aaPredicted RBP12.04□□□□□ -0.48
SMC6-207ENST00000448223 IGF1RP08069 1367 aa12.02□□□□□ -0.48
SMC6-207ENST00000448223 WDR97A6NE52 1622 aa12.02□□□□□ -0.48
SMC6-207ENST00000448223 ARID3AQ99856 593 aa12.02□□□□□ -0.49
SMC6-207ENST00000448223 PTMSP20962 102 aa12.01□□□□□ -0.49
SMC6-207ENST00000448223 TIMELESSQ9UNS1 1208 aa12□□□□□ -0.49
SMC6-207ENST00000448223 LRRC9Q6ZRR7 1453 aa12□□□□□ -0.49
SMC6-207ENST00000448223 TDRD9Q8NDG6 1382 aaKnown RBP11.99□□□□□ -0.49
SMC6-207ENST00000448223 TMC1Q8TDI8 760 aa11.99□□□□□ -0.49
SMC6-207ENST00000448223 BIVM-ERCC5R4GMW8 1640 aa11.98□□□□□ -0.49
SMC6-207ENST00000448223 PPP4R2Q9NY27 417 aa11.98□□□□□ -0.49
SMC6-207ENST00000448223 MAPKBP1O60336 1514 aa11.96□□□□□ -0.49
SMC6-207ENST00000448223 TIAM1Q13009 1591 aa11.96□□□□□ -0.49
SMC6-207ENST00000448223 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.95□□□□□ -0.51e-6■■□□□ 13.6
SMC6-207ENST00000448223 L3MBTL2Q969R5 705 aa11.95□□□□□ -0.5
SMC6-207ENST00000448223 RGL3Q3MIN7 710 aa11.94□□□□□ -0.5
SMC6-207ENST00000448223 CCDC184Q52MB2 194 aa11.94□□□□□ -0.5
SMC6-207ENST00000448223 FGD5Q6ZNL6 1462 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms