RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 IGF1RP08069 1367 aa28.85■■■□□ 2.21
LIME1-202ENST00000444951 KIF27Q86VH2 1401 aa28.81■■■□□ 2.2
LIME1-202ENST00000444951 CUL7Q14999 1698 aa28.77■■■□□ 2.2
LIME1-202ENST00000444951 KIAA0586Q9BVV6 1533 aa28.71■■■□□ 2.19
LIME1-202ENST00000444951 KIF13AQ9H1H9 1805 aa28.69■■■□□ 2.18
LIME1-202ENST00000444951 CARMIL1Q5VZK9 1371 aa28.63■■■□□ 2.17
LIME1-202ENST00000444951 ADCY10Q96PN6 1610 aa28.63■■■□□ 2.17
LIME1-202ENST00000444951 FAM9AQ8IZU1 332 aaPredicted RBP28.62■■■□□ 2.17
LIME1-202ENST00000444951 MAPKBP1O60336 1514 aa28.53■■■□□ 2.16
LIME1-202ENST00000444951 ABCC10Q5T3U5 1492 aa28.51■■■□□ 2.15
LIME1-202ENST00000444951 DIP2BQ9P265 1576 aa28.47■■■□□ 2.15
LIME1-202ENST00000444951 NPM1P06748 294 aaKnown RBP eCLIP28.47■■■□□ 2.15
LIME1-202ENST00000444951 IQGAP2Q13576 1575 aa28.46■■■□□ 2.15
LIME1-202ENST00000444951 FAM69CQ0P6D2 419 aa28.46■■■□□ 2.15
LIME1-202ENST00000444951 EEA1Q15075 1411 aa28.44■■■□□ 2.14
LIME1-202ENST00000444951 PTPRGP23470 1445 aa28.43■■■□□ 2.14
LIME1-202ENST00000444951 TTBK1Q5TCY1 1321 aaPredicted RBP28.43■■■□□ 2.14
LIME1-202ENST00000444951 CSRNP3Q8WYN3 585 aa28.41■■■□□ 2.14
LIME1-202ENST00000444951 TNIKQ9UKE5 1360 aa28.39■■■□□ 2.14
LIME1-202ENST00000444951 CARMIL2Q6F5E8 1435 aa28.38■■■□□ 2.13
LIME1-202ENST00000444951 RAPGEF2Q9Y4G8 1499 aa28.37■■■□□ 2.13
LIME1-202ENST00000444951 DISP1Q96F81 1524 aa28.37■■■□□ 2.13
LIME1-202ENST00000444951 AEBP2Q6ZN18 517 aaPredicted RBP28.33■■■□□ 2.13
LIME1-202ENST00000444951 ABCC2Q92887 1545 aa28.3■■■□□ 2.12
LIME1-202ENST00000444951 EHMT2Q96KQ7 1210 aa28.3■■■□□ 2.12
LIME1-202ENST00000444951 TSPOAP1O95153 1857 aa28.29■■■□□ 2.12
LIME1-202ENST00000444951 UGGT2Q9NYU1 1516 aa28.29■■■□□ 2.12
LIME1-202ENST00000444951 UHRF1BP1LA0JNW5 1464 aa28.24■■■□□ 2.11
LIME1-202ENST00000444951 KIAA0556O60303 1618 aa28.23■■■□□ 2.11
LIME1-202ENST00000444951 UACAQ9BZF9 1416 aa28.23■■■□□ 2.11
LIME1-202ENST00000444951 PRXQ9BXM0 1461 aa28.22■■■□□ 2.11
LIME1-202ENST00000444951 ASXL2Q76L83 1435 aa28.22■■■□□ 2.11
LIME1-202ENST00000444951 KDM6BO15054 1643 aa28.18■■■□□ 2.1
LIME1-202ENST00000444951 CTTNBP2Q8WZ74 1663 aa28.18■■■□□ 2.1
LIME1-202ENST00000444951 PLB1Q6P1J6 1458 aa28.15■■■□□ 2.1
LIME1-202ENST00000444951 KIF21BO75037 1637 aa28.14■■■□□ 2.1
LIME1-202ENST00000444951 PPRC1Q5VV67 1664 aaKnown RBP28.13■■■□□ 2.09
LIME1-202ENST00000444951 KDM5BQ9UGL1 1544 aa28.13■■■□□ 2.09
LIME1-202ENST00000444951 GLI2P10070 1586 aa28.12■■■□□ 2.09
LIME1-202ENST00000444951 ZCCHC11Q5TAX3 1644 aaKnown RBP28.11■■■□□ 2.09
LIME1-202ENST00000444951 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
LIME1-202ENST00000444951 EPRSP07814 1512 aaKnown RBP28.06■■■□□ 2.08
LIME1-202ENST00000444951 UBTFP17480 764 aaKnown RBP28.04■■■□□ 2.08
LIME1-202ENST00000444951 LOC105371045A0A1W2PR82 267 aa28.01■■■□□ 2.07
LIME1-202ENST00000444951 MAP3K4Q9Y6R4 1608 aa28■■■□□ 2.07
LIME1-202ENST00000444951 ABCA8O94911 1581 aa27.98■■■□□ 2.07
LIME1-202ENST00000444951 COL17A1Q9UMD9 1497 aaPredicted RBP27.94■■■□□ 2.06
LIME1-202ENST00000444951 KDM4FA0A1W2PPD8 638 aa27.93■■■□□ 2.06
LIME1-202ENST00000444951 WDR7Q9Y4E6 1490 aa27.93■■■□□ 2.06
LIME1-202ENST00000444951 RANGAP1P46060 587 aaPredicted RBP27.9■■■□□ 2.06
LIME1-202ENST00000444951 P3H3Q8IVL6 736 aa27.84■■■□□ 2.05
LIME1-202ENST00000444951 TEX14Q8IWB6 1497 aa27.83■■■□□ 2.05
LIME1-202ENST00000444951 SAMD9Q5K651 1589 aa27.79■■■□□ 2.04
LIME1-202ENST00000444951 ARID3CA6NKF2 412 aa27.78■■■□□ 2.04
LIME1-202ENST00000444951 KCNH8Q96L42 1107 aa27.77■■■□□ 2.04
LIME1-202ENST00000444951 CFAP43Q8NDM7 1665 aa27.76■■■□□ 2.03
LIME1-202ENST00000444951 CD109Q6YHK3 1445 aa27.75■■■□□ 2.03
LIME1-202ENST00000444951 MAGI3Q5TCQ9 1506 aa27.73■■■□□ 2.03
LIME1-202ENST00000444951 ATP10BO94823 1461 aa27.73■■■□□ 2.03
LIME1-202ENST00000444951 ADGRL1O94910 1474 aa27.7■■■□□ 2.03
LIME1-202ENST00000444951 RAPGEF6Q8TEU7 1601 aa27.67■■■□□ 2.02
LIME1-202ENST00000444951 FHOD3Q2V2M9 1422 aa27.62■■■□□ 2.01
LIME1-202ENST00000444951 CEP162Q5TB80 1403 aa27.6■■■□□ 2.01
LIME1-202ENST00000444951 CLIP1P30622 1438 aa27.59■■■□□ 2.01
LIME1-202ENST00000444951 NUP153P49790 1475 aaKnown RBP27.58■■■□□ 2.01
LIME1-202ENST00000444951 ABCA9Q8IUA7 1624 aa27.58■■■□□ 2.01
LIME1-202ENST00000444951 EFCAB5A4FU69 1503 aa27.55■■■□□ 2
LIME1-202ENST00000444951 ARHGAP35Q9NRY4 1499 aa27.54■■■□□ 2
LIME1-202ENST00000444951 ARAP3Q8WWN8 1544 aa27.51■■□□□ 1.99
LIME1-202ENST00000444951 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.48■■□□□ 1.99
LIME1-202ENST00000444951 HNRNPUL2Q1KMD3 747 aaKnown RBP27.48■■□□□ 1.99
LIME1-202ENST00000444951 FRMPD1Q5SYB0 1578 aa27.39■■□□□ 1.97
LIME1-202ENST00000444951 NEO1Q92859 1461 aa27.38■■□□□ 1.97
LIME1-202ENST00000444951 RAPGEF3O95398 923 aa27.38■■□□□ 1.97
LIME1-202ENST00000444951 PHLDB1Q86UU1 1377 aa27.36■■□□□ 1.97
LIME1-202ENST00000444951 CDK13Q14004 1512 aaKnown RBP27.35■■□□□ 1.97
LIME1-202ENST00000444951 PLEKHD1A6NEE1 506 aa27.33■■□□□ 1.97
LIME1-202ENST00000444951 HECW2Q9P2P5 1572 aa27.33■■□□□ 1.97
LIME1-202ENST00000444951 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.32■■□□□ 1.96
LIME1-202ENST00000444951 TTC37Q6PGP7 1564 aa27.31■■□□□ 1.96
LIME1-202ENST00000444951 ATP1B4Q9UN42 357 aaPredicted RBP27.31■■□□□ 1.96
LIME1-202ENST00000444951 FMN1Q68DA7 1419 aa27.31■■□□□ 1.96
LIME1-202ENST00000444951 RICTORQ6R327 1708 aa27.24■■□□□ 1.95
LIME1-202ENST00000444951 FANCAO15360 1455 aa27.24■■□□□ 1.95
LIME1-202ENST00000444951 ADAMTSL3P82987 1691 aa27.23■■□□□ 1.95
LIME1-202ENST00000444951 AKNAQ7Z591 1439 aa27.23■■□□□ 1.95
LIME1-202ENST00000444951 PCF11O94913 1555 aaKnown RBP27.22■■□□□ 1.95
LIME1-202ENST00000444951 DENND4BO75064 1496 aaPredicted RBP27.2■■□□□ 1.95
LIME1-202ENST00000444951 VPS8Q8N3P4 1428 aa27.2■■□□□ 1.94
LIME1-202ENST00000444951 CFAP74Q9C0B2 1584 aa27.2■■□□□ 1.94
LIME1-202ENST00000444951 HECW1Q76N89 1606 aa27.19■■□□□ 1.94
LIME1-202ENST00000444951 ARHGEF40Q8TER5 1519 aa27.18■■□□□ 1.94
LIME1-202ENST00000444951 BCORL1Q5H9F3 1711 aa27.16■■□□□ 1.94
LIME1-202ENST00000444951 CASKIN1Q8WXD9 1431 aa27.16■■□□□ 1.94
LIME1-202ENST00000444951 LRRIQ1Q96JM4 1722 aa27.14■■□□□ 1.94
LIME1-202ENST00000444951 PTPRMP28827 1452 aa27.13■■□□□ 1.93
LIME1-202ENST00000444951 FYCO1Q9BQS8 1478 aa27.13■■□□□ 1.93
LIME1-202ENST00000444951 MADDQ8WXG6 1647 aa27.12■■□□□ 1.93
LIME1-202ENST00000444951 KIF14Q15058 1648 aa27.12■■□□□ 1.93
LIME1-202ENST00000444951 ZMYM4Q5VZL5 1548 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms