RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 RUSC2Q8N2Y8 1516 aa25.91■■□□□ 1.74
HMGN1-208ENST00000443046 ABCC10Q5T3U5 1492 aa25.9■■□□□ 1.74
HMGN1-208ENST00000443046 MAPKBP1O60336 1514 aa25.87■■□□□ 1.73
HMGN1-208ENST00000443046 FAM69CQ0P6D2 419 aa25.84■■□□□ 1.73
HMGN1-208ENST00000443046 ADCY10Q96PN6 1610 aa25.81■■□□□ 1.72
HMGN1-208ENST00000443046 DIP2BQ9P265 1576 aa25.8■■□□□ 1.72
HMGN1-208ENST00000443046 NPM1P06748 294 aaKnown RBP eCLIP25.79■■□□□ 1.72
HMGN1-208ENST00000443046 KIAA0586Q9BVV6 1533 aa25.75■■□□□ 1.71
HMGN1-208ENST00000443046 IGF1RP08069 1367 aa25.72■■□□□ 1.71
HMGN1-208ENST00000443046 KDM6BO15054 1643 aa25.65■■□□□ 1.7
HMGN1-208ENST00000443046 CUL7Q14999 1698 aa25.64■■□□□ 1.7
HMGN1-208ENST00000443046 KDM4FA0A1W2PPD8 638 aa25.64■■□□□ 1.7
HMGN1-208ENST00000443046 KIF27Q86VH2 1401 aa25.62■■□□□ 1.69
HMGN1-208ENST00000443046 TSPOAP1O95153 1857 aa25.59■■□□□ 1.69
HMGN1-208ENST00000443046 PTPRGP23470 1445 aa25.56■■□□□ 1.68
HMGN1-208ENST00000443046 ABCC2Q92887 1545 aa25.51■■□□□ 1.67
HMGN1-208ENST00000443046 CARMIL1Q5VZK9 1371 aa25.5■■□□□ 1.67
HMGN1-208ENST00000443046 TNIKQ9UKE5 1360 aa25.49■■□□□ 1.67
HMGN1-208ENST00000443046 GLI2P10070 1586 aa25.47■■□□□ 1.67
HMGN1-208ENST00000443046 CARMIL2Q6F5E8 1435 aa25.46■■□□□ 1.67
HMGN1-208ENST00000443046 PPRC1Q5VV67 1664 aaKnown RBP25.46■■□□□ 1.67
HMGN1-208ENST00000443046 UHRF1BP1LA0JNW5 1464 aa25.45■■□□□ 1.66
HMGN1-208ENST00000443046 ASXL2Q76L83 1435 aa25.45■■□□□ 1.66
HMGN1-208ENST00000443046 PLB1Q6P1J6 1458 aa25.44■■□□□ 1.66
HMGN1-208ENST00000443046 IQGAP2Q13576 1575 aa25.41■■□□□ 1.66
HMGN1-208ENST00000443046 TTBK1Q5TCY1 1321 aaPredicted RBP25.37■■□□□ 1.65
HMGN1-208ENST00000443046 DISP1Q96F81 1524 aa25.37■■□□□ 1.65
HMGN1-208ENST00000443046 UACAQ9BZF9 1416 aa25.37■■□□□ 1.65
HMGN1-208ENST00000443046 KDM5BQ9UGL1 1544 aa25.32■■□□□ 1.64
HMGN1-208ENST00000443046 COL17A1Q9UMD9 1497 aaPredicted RBP25.32■■□□□ 1.64
HMGN1-208ENST00000443046 EPRSP07814 1512 aaKnown RBP25.31■■□□□ 1.64
HMGN1-208ENST00000443046 MAP3K4Q9Y6R4 1608 aa25.3■■□□□ 1.64
HMGN1-208ENST00000443046 ADGRL1O94910 1474 aa25.28■■□□□ 1.64
HMGN1-208ENST00000443046 UGGT2Q9NYU1 1516 aa25.27■■□□□ 1.64
HMGN1-208ENST00000443046 ILDR1Q86SU0 546 aaPredicted RBP25.23■■□□□ 1.63
HMGN1-208ENST00000443046 ZCCHC11Q5TAX3 1644 aaKnown RBP25.23■■□□□ 1.63
HMGN1-208ENST00000443046 RAPGEF2Q9Y4G8 1499 aa25.21■■□□□ 1.63
HMGN1-208ENST00000443046 TEX14Q8IWB6 1497 aa25.21■■□□□ 1.63
HMGN1-208ENST00000443046 KIAA0556O60303 1618 aa25.19■■□□□ 1.62
HMGN1-208ENST00000443046 WDR7Q9Y4E6 1490 aa25.12■■□□□ 1.61
HMGN1-208ENST00000443046 HECW2Q9P2P5 1572 aa25.07■■□□□ 1.6
HMGN1-208ENST00000443046 MAGI3Q5TCQ9 1506 aa25.06■■□□□ 1.6
HMGN1-208ENST00000443046 ABCA8O94911 1581 aa25.02■■□□□ 1.6
HMGN1-208ENST00000443046 CFAP43Q8NDM7 1665 aa25.02■■□□□ 1.6
HMGN1-208ENST00000443046 CD109Q6YHK3 1445 aa25.02■■□□□ 1.6
HMGN1-208ENST00000443046 CTTNBP2Q8WZ74 1663 aa25.01■■□□□ 1.59
HMGN1-208ENST00000443046 GOLGA3Q08378 1498 aa24.99■■□□□ 1.59
HMGN1-208ENST00000443046 KCNH8Q96L42 1107 aa24.94■■□□□ 1.58
HMGN1-208ENST00000443046 PRXQ9BXM0 1461 aa24.89■■□□□ 1.58
HMGN1-208ENST00000443046 ARAP3Q8WWN8 1544 aa24.89■■□□□ 1.57
HMGN1-208ENST00000443046 KIF21BO75037 1637 aa24.85■■□□□ 1.57
HMGN1-208ENST00000443046 ATP10BO94823 1461 aa24.81■■□□□ 1.56
HMGN1-208ENST00000443046 PHLDB1Q86UU1 1377 aa24.78■■□□□ 1.56
HMGN1-208ENST00000443046 ABCA9Q8IUA7 1624 aa24.77■■□□□ 1.56
HMGN1-208ENST00000443046 ADAMTSL3P82987 1691 aa24.74■■□□□ 1.55
HMGN1-208ENST00000443046 ARID3CA6NKF2 412 aa24.7■■□□□ 1.54
HMGN1-208ENST00000443046 PTPRMP28827 1452 aa24.7■■□□□ 1.54
HMGN1-208ENST00000443046 P3H3Q8IVL6 736 aa24.69■■□□□ 1.54
HMGN1-208ENST00000443046 SAMD9Q5K651 1589 aa24.68■■□□□ 1.54
HMGN1-208ENST00000443046 FAM9AQ8IZU1 332 aaPredicted RBP24.68■■□□□ 1.54
HMGN1-208ENST00000443046 NEO1Q92859 1461 aa24.68■■□□□ 1.54
HMGN1-208ENST00000443046 RAPGEF3O95398 923 aa24.67■■□□□ 1.54
HMGN1-208ENST00000443046 FBXO41Q8TF61 875 aa24.65■■□□□ 1.54
HMGN1-208ENST00000443046 RAPGEF6Q8TEU7 1601 aa24.64■■□□□ 1.53
HMGN1-208ENST00000443046 FRMPD1Q5SYB0 1578 aa24.63■■□□□ 1.53
HMGN1-208ENST00000443046 BCORL1Q5H9F3 1711 aa24.61■■□□□ 1.53
HMGN1-208ENST00000443046 NUP153P49790 1475 aaKnown RBP24.58■■□□□ 1.52
HMGN1-208ENST00000443046 MADDQ8WXG6 1647 aa24.56■■□□□ 1.52
HMGN1-208ENST00000443046 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
HMGN1-208ENST00000443046 PCF11O94913 1555 aaKnown RBP24.53■■□□□ 1.52
HMGN1-208ENST00000443046 LMTK3Q96Q04 1460 aa24.51■■□□□ 1.51
HMGN1-208ENST00000443046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.5■■□□□ 1.51
HMGN1-208ENST00000443046 HNRNPUL2Q1KMD3 747 aaKnown RBP24.5■■□□□ 1.51
HMGN1-208ENST00000443046 ARHGEF40Q8TER5 1519 aa24.5■■□□□ 1.51
HMGN1-208ENST00000443046 RICTORQ6R327 1708 aa24.49■■□□□ 1.51
HMGN1-208ENST00000443046 ARID4BQ4LE39 1312 aaPredicted RBP24.49■■□□□ 1.51
HMGN1-208ENST00000443046 DENND4BO75064 1496 aaPredicted RBP24.48■■□□□ 1.51
HMGN1-208ENST00000443046 FHOD3Q2V2M9 1422 aa24.48■■□□□ 1.51
HMGN1-208ENST00000443046 AKNAQ7Z591 1439 aa24.46■■□□□ 1.51
HMGN1-208ENST00000443046 PLEKHD1A6NEE1 506 aa24.44■■□□□ 1.5
HMGN1-208ENST00000443046 RIMS1Q86UR5 1692 aaKnown RBP24.43■■□□□ 1.5
HMGN1-208ENST00000443046 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.42■■□□□ 1.51e-6■■■■□ 20.1
HMGN1-208ENST00000443046 FANCAO15360 1455 aa24.42■■□□□ 1.5
HMGN1-208ENST00000443046 ZMYM4Q5VZL5 1548 aa24.41■■□□□ 1.5
HMGN1-208ENST00000443046 CFAP74Q9C0B2 1584 aa24.41■■□□□ 1.5
HMGN1-208ENST00000443046 SIGLEC1Q9BZZ2 1709 aa24.38■■□□□ 1.49
HMGN1-208ENST00000443046 EEA1Q15075 1411 aa24.37■■□□□ 1.49
HMGN1-208ENST00000443046 TTC37Q6PGP7 1564 aa24.37■■□□□ 1.49
HMGN1-208ENST00000443046 MAGI2Q86UL8 1455 aa24.35■■□□□ 1.49
HMGN1-208ENST00000443046 POGZQ7Z3K3 1410 aa24.35■■□□□ 1.49
HMGN1-208ENST00000443046 YEATS2Q9ULM3 1422 aa24.35■■□□□ 1.49
HMGN1-208ENST00000443046 ZFYVE16Q7Z3T8 1539 aa24.34■■□□□ 1.49
HMGN1-208ENST00000443046 RANGAP1P46060 587 aaPredicted RBP24.33■■□□□ 1.49
HMGN1-208ENST00000443046 EFCAB5A4FU69 1503 aa24.33■■□□□ 1.49
HMGN1-208ENST00000443046 HSPA2P54652 639 aa24.32■■□□□ 1.48
HMGN1-208ENST00000443046 HECW1Q76N89 1606 aa24.3■■□□□ 1.48
HMGN1-208ENST00000443046 PLCH2O75038 1416 aa24.27■■□□□ 1.48
HMGN1-208ENST00000443046 SCAPERQ9BY12 1400 aa24.25■■□□□ 1.47
HMGN1-208ENST00000443046 CDK13Q14004 1512 aaKnown RBP24.25■■□□□ 1.47
HMGN1-208ENST00000443046 FER1L4A9Z1Z3 1794 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms