RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ATAD2BQ9ULI0 1458 aa15.58■□□□□ 0.08
SYNE2-206ENST00000441438 POLR3GLQ9BT43 218 aa15.58■□□□□ 0.08
SYNE2-206ENST00000441438 CECR2Q9BXF3 1484 aa15.57■□□□□ 0.08
SYNE2-206ENST00000441438 RSPH4AQ5TD94 716 aa15.57■□□□□ 0.08
SYNE2-206ENST00000441438 CCDC136Q96JN2 1154 aa15.54■□□□□ 0.08
SYNE2-206ENST00000441438 BCCIPQ9P287 314 aaKnown RBP eCLIP15.54■□□□□ 0.08
SYNE2-206ENST00000441438 TOP2AP11388 1531 aaKnown RBP15.53■□□□□ 0.08
SYNE2-206ENST00000441438 NPM3O75607 178 aaKnown RBP15.49■□□□□ 0.07
SYNE2-206ENST00000441438 LAMC3Q9Y6N6 1575 aa15.49■□□□□ 0.07
SYNE2-206ENST00000441438 NECTIN2Q92692 538 aa15.46■□□□□ 0.07
SYNE2-206ENST00000441438 NBR1Q14596 966 aa15.45■□□□□ 0.06
SYNE2-206ENST00000441438 SCAF1Q9H7N4 1312 aaKnown RBP15.44■□□□□ 0.06
SYNE2-206ENST00000441438 IRX6P78412 446 aaPredicted RBP15.42■□□□□ 0.06
SYNE2-206ENST00000441438 MROH2BQ7Z745 1585 aa15.42■□□□□ 0.06
SYNE2-206ENST00000441438 PAXIP1Q6ZW49 1069 aaPredicted RBP15.4■□□□□ 0.06
SYNE2-206ENST00000441438 ARID3AQ99856 593 aa15.4■□□□□ 0.06
SYNE2-206ENST00000441438 TRHP20396 242 aaPredicted RBP15.37■□□□□ 0.05
SYNE2-206ENST00000441438 ZNF326Q5BKZ1 582 aaKnown RBP15.37■□□□□ 0.05
SYNE2-206ENST00000441438 ZEB1P37275 1124 aaPredicted RBP15.37■□□□□ 0.05
SYNE2-206ENST00000441438 ZBTB7CA1YPR0 619 aa15.37■□□□□ 0.05
SYNE2-206ENST00000441438 AAMPQ13685 434 aa15.36■□□□□ 0.05
SYNE2-206ENST00000441438 RSPH6AQ9H0K4 717 aa15.35■□□□□ 0.05
SYNE2-206ENST00000441438 WDR97A6NE52 1622 aa15.35■□□□□ 0.05
SYNE2-206ENST00000441438 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
SYNE2-206ENST00000441438 TSHZ2Q9NRE2 1034 aa15.32■□□□□ 0.04
SYNE2-206ENST00000441438 BRPF3Q9ULD4 1205 aa15.31■□□□□ 0.04
SYNE2-206ENST00000441438 RSF1Q96T23 1441 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-206ENST00000441438 A0A0U1RQG5 324 aaPredicted RBP15.27■□□□□ 0.03
SYNE2-206ENST00000441438 NAP1L5Q96NT1 182 aaPredicted RBP15.26■□□□□ 0.03
SYNE2-206ENST00000441438 WIZO95785 1651 aa15.25■□□□□ 0.03
SYNE2-206ENST00000441438 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.24■□□□□ 0.03
SYNE2-206ENST00000441438 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
SYNE2-206ENST00000441438 ZFP91Q96JP5 570 aaPredicted RBP15.22■□□□□ 0.03
SYNE2-206ENST00000441438 ANP32EQ9BTT0 268 aa15.22■□□□□ 0.03
SYNE2-206ENST00000441438 CUX2O14529 1486 aa15.21■□□□□ 0.03
SYNE2-206ENST00000441438 ZNF592Q92610 1267 aa15.21■□□□□ 0.03
SYNE2-206ENST00000441438 ZNF428Q96B54 188 aa15.2■□□□□ 0.02
SYNE2-206ENST00000441438 C1orf115Q9H7X2 142 aa15.19■□□□□ 0.02
SYNE2-206ENST00000441438 CFTRP13569 1480 aa15.18■□□□□ 0.02
SYNE2-206ENST00000441438 THOC2Q8NI27 1593 aaKnown RBP15.17■□□□□ 0.02
SYNE2-206ENST00000441438 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-206ENST00000441438 TMED8Q6PL24 325 aaPredicted RBP15.15■□□□□ 0.02
SYNE2-206ENST00000441438 ABCC8Q09428 1581 aa15.12■□□□□ 0.01
SYNE2-206ENST00000441438 WDR62O43379 1518 aa15.12■□□□□ 0.01
SYNE2-206ENST00000441438 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.11■□□□□ 0.01
SYNE2-206ENST00000441438 CLSTN1O94985 981 aa15.09■□□□□ 0.01
SYNE2-206ENST00000441438 BRPF1P55201 1214 aaPredicted RBP15.09■□□□□ 0.01
SYNE2-206ENST00000441438 NPM1P06748 294 aaKnown RBP eCLIP15.08■□□□□ 0
SYNE2-206ENST00000441438 CERS3Q8IU89 383 aa15.06■□□□□ 0
SYNE2-206ENST00000441438 RGS22Q8NE09 1264 aa15.06■□□□□ 0
SYNE2-206ENST00000441438 RAD21O60216 631 aa15.06■□□□□ 0
SYNE2-206ENST00000441438 RBM10P98175 930 aaKnown RBP15.06■□□□□ 0
SYNE2-206ENST00000441438 BBXQ8WY36 941 aaPredicted RBP15.06■□□□□ 0
SYNE2-206ENST00000441438 CWC22Q9HCG8 908 aaKnown RBP15.06■□□□□ 0
SYNE2-206ENST00000441438 KCTD17Q8N5Z5 321 aa15.04■□□□□ -0
SYNE2-206ENST00000441438 PSMD1Q99460 953 aa15.03■□□□□ -0
SYNE2-206ENST00000441438 CADPSQ9ULU8 1353 aa15.03■□□□□ -0
SYNE2-206ENST00000441438 ZMYND15Q9H091 742 aa15.02■□□□□ -0
SYNE2-206ENST00000441438 PDS5BQ9NTI5 1447 aa15.02■□□□□ -0
SYNE2-206ENST00000441438 CLSPNQ9HAW4 1339 aa15.01□□□□□ -0.01
SYNE2-206ENST00000441438 MTMR7Q9Y216 660 aa15.01□□□□□ -0.01
SYNE2-206ENST00000441438 KIF21AQ7Z4S6 1674 aa14.99□□□□□ -0.01
SYNE2-206ENST00000441438 FAM177A1Q8N128 213 aaPredicted RBP14.98□□□□□ -0.01
SYNE2-206ENST00000441438 RBM25P49756 843 aaKnown RBP14.97□□□□□ -0.01
SYNE2-206ENST00000441438 DNAJC5Q9H3Z4 198 aa14.96□□□□□ -0.02
SYNE2-206ENST00000441438 SALL2Q9Y467 1007 aaPredicted RBP14.96□□□□□ -0.02
SYNE2-206ENST00000441438 BIVM-ERCC5R4GMW8 1640 aa14.96□□□□□ -0.02
SYNE2-206ENST00000441438 FOXD4L5Q5VV16 416 aaPredicted RBP14.95□□□□□ -0.02
SYNE2-206ENST00000441438 FOXD4L4Q8WXT5 416 aaPredicted RBP14.95□□□□□ -0.02
SYNE2-206ENST00000441438 PKD2Q13563 968 aa14.95□□□□□ -0.02
SYNE2-206ENST00000441438 PRDM10Q9NQV6 1147 aa14.95□□□□□ -0.02
SYNE2-206ENST00000441438 FOXD4L1Q9NU39 408 aa14.95□□□□□ -0.02
SYNE2-206ENST00000441438 MRC2Q9UBG0 1479 aa14.94□□□□□ -0.02
SYNE2-206ENST00000441438 NCLP19338 710 aaKnown RBP14.94□□□□□ -0.02
SYNE2-206ENST00000441438 PRDM16Q9HAZ2 1276 aa14.93□□□□□ -0.02
SYNE2-206ENST00000441438 CCDC88BA6NC98 1476 aa14.92□□□□□ -0.02
SYNE2-206ENST00000441438 DNMBPQ6XZF7 1577 aa14.92□□□□□ -0.02
SYNE2-206ENST00000441438 ERCC6Q03468 1493 aa14.91□□□□□ -0.02
SYNE2-206ENST00000441438 CC2D2BQ6DHV5 1058 aa14.91□□□□□ -0.02
SYNE2-206ENST00000441438 ARID3CA6NKF2 412 aa14.89□□□□□ -0.03
SYNE2-206ENST00000441438 USP35Q9P2H5 1018 aa14.88□□□□□ -0.03
SYNE2-206ENST00000441438 CNPY4Q8N129 248 aa14.87□□□□□ -0.03
SYNE2-206ENST00000441438 ERICH6BQ5W0A0 696 aa14.87□□□□□ -0.03
SYNE2-206ENST00000441438 CEP164Q9UPV0 1460 aa14.85□□□□□ -0.03
SYNE2-206ENST00000441438 ARID4BQ4LE39 1312 aaPredicted RBP14.85□□□□□ -0.03
SYNE2-206ENST00000441438 ZNF526Q8TF50 670 aaPredicted RBP14.83□□□□□ -0.04
SYNE2-206ENST00000441438 TEX2Q8IWB9 1127 aa14.82□□□□□ -0.04
SYNE2-206ENST00000441438 PPM1GO15355 546 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-206ENST00000441438 NESP48681 1621 aa14.8□□□□□ -0.04
SYNE2-206ENST00000441438 FANCD2Q9BXW9 1451 aa14.79□□□□□ -0.04
SYNE2-206ENST00000441438 SPRYD3Q8NCJ5 442 aa14.79□□□□□ -0.04
SYNE2-206ENST00000441438 PCGF6Q9BYE7 350 aa14.78□□□□□ -0.04
SYNE2-206ENST00000441438 DEKP35659 375 aaKnown RBP14.77□□□□□ -0.05
SYNE2-206ENST00000441438 TOP2BQ02880 1626 aa14.76□□□□□ -0.05
SYNE2-206ENST00000441438 TARBP1Q13395 1621 aaKnown RBP14.76□□□□□ -0.05
SYNE2-206ENST00000441438 CHRM1P11229 460 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-206ENST00000441438 PLCD4Q9BRC7 762 aa14.75□□□□□ -0.05
SYNE2-206ENST00000441438 NAP1L2Q9ULW6 460 aaPredicted RBP14.74□□□□□ -0.05
SYNE2-206ENST00000441438 IFT140Q96RY7 1462 aa14.73□□□□□ -0.05
SYNE2-206ENST00000441438 PPP4R3CPQ6ZMV5 832 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms